mRNA_1416 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|161769
Unique NamemRNA_1416
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|161769 vs. uniprot
Match: A0A835Z7G2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7G2_9STRA)

HSP 1 Score: 605 bits (1561), Expect = 1.690e-219
Identity = 285/285 (100.00%), Postives = 285/285 (100.00%), Query Frame = 1 
Query:    1 PAGAPWHVVICEAAAEAGHFAMFRRLRWLTAGDDDGPDWLCAAVEGGNPRLVRHLLSSHYWSDAHTITHAAAKSLELVKMLREDDDCEWDARAGNAAAHAGLIDVLDYLSGSGCEIEGNIHSIAAKSGHVHVMRWAHQKGIAMDEEWFWRHLHGAQAHEAVQWMKGAGIPVTSKVCVTAARDGNLSVLAALRSMNVTWDEQVCTSAAEHAHLHVLKWAIKNGCPYSAPDLTFAALTSCNMAVIQYLSDQQLLTPPSILGYHEMMRVTEACDTQRLSRWLLKHGYQ 855
            PAGAPWHVVICEAAAEAGHFAMFRRLRWLTAGDDDGPDWLCAAVEGGNPRLVRHLLSSHYWSDAHTITHAAAKSLELVKMLREDDDCEWDARAGNAAAHAGLIDVLDYLSGSGCEIEGNIHSIAAKSGHVHVMRWAHQKGIAMDEEWFWRHLHGAQAHEAVQWMKGAGIPVTSKVCVTAARDGNLSVLAALRSMNVTWDEQVCTSAAEHAHLHVLKWAIKNGCPYSAPDLTFAALTSCNMAVIQYLSDQQLLTPPSILGYHEMMRVTEACDTQRLSRWLLKHGYQ
Sbjct:    1 PAGAPWHVVICEAAAEAGHFAMFRRLRWLTAGDDDGPDWLCAAVEGGNPRLVRHLLSSHYWSDAHTITHAAAKSLELVKMLREDDDCEWDARAGNAAAHAGLIDVLDYLSGSGCEIEGNIHSIAAKSGHVHVMRWAHQKGIAMDEEWFWRHLHGAQAHEAVQWMKGAGIPVTSKVCVTAARDGNLSVLAALRSMNVTWDEQVCTSAAEHAHLHVLKWAIKNGCPYSAPDLTFAALTSCNMAVIQYLSDQQLLTPPSILGYHEMMRVTEACDTQRLSRWLLKHGYQ 285
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BLAST of jgi.p|Trimin1|161769 vs. uniprot
Match: A0A836CFK4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFK4_9STRA)

HSP 1 Score: 413 bits (1061), Expect = 7.980e-144
Identity = 199/252 (78.97%), Postives = 211/252 (83.73%), Query Frame = 1 
Query:  199 ITHAAAKSLELVKMLREDDDCEWDARAGNAAAHAGLIDVLDYLSGSGCEIEGNIHSIAAKSGHVHVMRWAHQKGIAMDEEWFWRHLHGAQ---------------------------------AHEAVQWMKGAGIPVTSKVCVTAARDGNLSVLAALRSMNVTWDEQVCTSAAEHAHLHVLKWAIKNGCPYSAPDLTFAALTSCNMAVIQYLSDQQLLTPPSILGYHEMMRVTEACDTQRLSRWLLKHGYQ 855
            +THAAAKSL+LVK+LRE+DDCEWD RAGNAAAHAGLIDVLDYLS SGCEIE N+HSIAA+SGHVHVMRWAHQKGI MDEEWFWRHLHGAQ                                 AHEAVQWMKGAGIPVT +VC  AARDGNLSVLAALRSMNVTW+EQVCTSAA+HAHLH+LKWA+KNGCPYSAPDLTFAALTSCNMAVIQYLSD+QLLTPPSILGYHEMM VTEACDTQRLSRWLLKHGYQ
Sbjct:    1 MTHAAAKSLKLVKLLREEDDCEWDVRAGNAAAHAGLIDVLDYLSDSGCEIEANVHSIAAESGHVHVMRWAHQKGIVMDEEWFWRHLHGAQLTLSVAQYLADKGHIDSMLLHDVSVAPGVTRQEAHEAVQWMKGAGIPVTPRVCAAAARDGNLSVLAALRSMNVTWNEQVCTSAADHAHLHILKWAMKNGCPYSAPDLTFAALTSCNMAVIQYLSDKQLLTPPSILGYHEMMHVTEACDTQRLSRWLLKHGYQ 252
[Close]
BLAST of jgi.p|Trimin1|161769 vs. uniprot
Match: A0A835ZCP1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCP1_9STRA)

HSP 1 Score: 303 bits (777), Expect = 1.980e-98
Identity = 150/290 (51.72%), Postives = 181/290 (62.41%), Query Frame = 1 
Query:   85 LTAGDDDGPDWLCAAVEGGNPRLVRHLLSSHYWSDAHTITHAAAKSLELVKMLREDDDCEWDARAGNAAAHAGLIDVLDYLSGSGCEIEGNIHSIAAKSGHVHVMRWAHQKGIAMDEEWFWRHLHGA---------------------------------QAHEAVQWMKGAGIPVTSKVCVTAARDGNLSVLAALRSMNVTWDEQVCTSAAEHAHLHVLKWAIKNGCPYSAPDLTFAALTSCNMAVIQYLSDQQLLTPPSILGYHEMMRVTEACDTQRLSRWLLKHGYQ 855
            LTAGD+DGPDWLCAAV+GGN  L+R +LS HYW DAHT+ HAA KSL++V++L EDDDC WD RA +AAA AG +DVL +L                               IA D E FWR LHGA                                 +A  AV+WM  AG P++ + C  AAR+GNL VL  LRS+ V WDE+VCT AAEHAHLHVLKWAI +GCPYS  DLTFAALT CNMA+ +YL+D+++LT PS+LGY  M+ V+E C TQRLSRWLL HGY+
Sbjct:  119 LTAGDEDGPDWLCAAVKGGNEDLIRDMLSRHYWGDAHTMMHAAGKSLKMVRLLLEDDDCGWDERAPDAAAEAGHVDVLAFLMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIAFDAECFWRRLHGALVDYDVVQFLVEEGHLDTMLLHGVTMTPGSTCTEARRAVRWMNDAGAPMSHRACEMAAREGNLQVLITLRSLRVEWDERVCTGAAEHAHLHVLKWAITHGCPYSGADLTFAALTFCNMAITEYLNDKEILTRPSVLGYEGMLHVSEECFTQRLSRWLLLHGYE 408
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|161769 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835Z7G2_9STRA1.690e-219100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836CFK4_9STRA7.980e-14478.97Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZCP1_9STRA1.980e-9851.72Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_18contigContig_18:995907..999194 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|161769|e_gw1.18.131.1
DescriptionAnkyrin repeats (3 copies)
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGs2ENSH@1|root,2SS4J@2759|Eukaryota
Evalue2.68e-05
Seed ortholog41875.XP_007513235.1
Hectar predicted targeting categoryother localisation
TranscriptId162091
TrackFilteredModels1
ProteinId161769
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161769gene_1416Tribonema minus UTEX_B_3156 geneContig_18 995907..999194 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161769Trimin1|161769|e_gw1.18.131.1Tribonema minus UTEX_B_3156 polypeptideContig_18 995907..999194 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1416_3exon_1416_3Tribonema minus UTEX_B_3156 exonContig_18 995907..996296 -
exon_1416_2exon_1416_2Tribonema minus UTEX_B_3156 exonContig_18 996396..996829 -
exon_1416_1exon_1416_1Tribonema minus UTEX_B_3156 exonContig_18 999161..999194 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1416CDS_1416Tribonema minus UTEX_B_3156 CDSContig_18 999161..999194 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1416 ID=mRNA_1416|Name=jgi.p|Trimin1|161769|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=858bp|location=Sequence derived from alignment at Contig_18:995907..999194- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CCTGCTGGCGCACCTTGGCATGTTGTGATTTGTGAAGCCGCAGCAGAAGC
GGGGCACTTTGCCATGTTCAGGAGGTTGAGGTGGCTGACCGCAGGAGATG
ATGACGGCCCAGACTGGCTGTGTGCCGCAGTCGAGGGAGGCAACCCCCGC
CTTGTCAGGCACTTGCTGTCGAGCCATTACTGGTCTGATGCTCATACGAT
CACGCATGCAGCCGCAAAGTCTCTTGAGCTCGTCAAAATGTTACGGGAGG
ATGATGATTGCGAGTGGGATGCGAGAGCGGGCAATGCAGCAGCACACGCA
GGCCTCATCGATGTTTTGGACTATCTGAGTGGGAGTGGCTGCGAAATAGA
AGGAAATATACACAGCATAGCTGCCAAGAGCGGACACGTACACGTCATGA
GATGGGCGCACCAGAAGGGGATTGCAATGGACGAGGAATGGTTTTGGCGT
CACCTGCACGGAGCGCAAGCGCACGAAGCTGTACAGTGGATGAAAGGCGC
TGGCATACCGGTCACATCCAAAGTGTGCGTAACAGCAGCGCGGGACGGCA
ATCTGTCAGTGCTAGCTGCGTTGAGATCTATGAACGTCACCTGGGATGAG
CAGGTGTGCACCAGCGCAGCGGAACACGCTCACCTACACGTTCTCAAGTG
GGCCATTAAGAACGGATGCCCATACTCTGCCCCCGACCTCACCTTTGCAG
CACTCACATCCTGCAACATGGCTGTCATACAGTACTTGTCGGATCAGCAG
CTTCTCACACCGCCTAGCATACTAGGGTATCATGAGATGATGCGTGTAAC
AGAGGCATGCGACACACAGCGCCTGTCGAGATGGCTGCTCAAGCACGGAT
ATCAGTAA
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protein sequence of jgi.p|Trimin1|161769

>Trimin1|161769|e_gw1.18.131.1 ID=Trimin1|161769|e_gw1.18.131.1|Name=jgi.p|Trimin1|161769|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=286bp
PAGAPWHVVICEAAAEAGHFAMFRRLRWLTAGDDDGPDWLCAAVEGGNPR
LVRHLLSSHYWSDAHTITHAAAKSLELVKMLREDDDCEWDARAGNAAAHA
GLIDVLDYLSGSGCEIEGNIHSIAAKSGHVHVMRWAHQKGIAMDEEWFWR
HLHGAQAHEAVQWMKGAGIPVTSKVCVTAARDGNLSVLAALRSMNVTWDE
QVCTSAAEHAHLHVLKWAIKNGCPYSAPDLTFAALTSCNMAVIQYLSDQQ
LLTPPSILGYHEMMRVTEACDTQRLSRWLLKHGYQ*
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mRNA from alignment at Contig_18:995907..999194-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1416 ID=mRNA_1416|Name=jgi.p|Trimin1|161769|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3288bp|location=Sequence derived from alignment at Contig_18:995907..999194- (Tribonema minus UTEX_B_3156 )
CCTGCTGGCGCACCTTGGCATGTTGTGATTTGTGGTGATTTTGCTCACCA
TTCTCTTCAGTCATTGCTGTATTTGGGCCGAGAGCCACACTGCTTATGGC
GTCTTGAGAGACGCAAGTTTACGAGCTTGAGCAGCGTTCTGCTGCCTTCT
TCTGCTAAGCGGGCTAGAAGCACCAGTGGGAGACGGCGTCGATTTTGATG
CAGCTGCTCGCTGTGAAGCTGTGCTTGTATTAGCAACGTGTCCTGACCCT
ACTCCCAGTGGCGTATGCTTTGGCGAGGCCTGGGCCTTGGGTGAAGATGG
CGGAGTCTTTACTGCAGCAGCGTAGCTCATAGGTTGAACAGCGCTCGGAC
CCGCTGCTGCACTTGCTGGCGCGCTCACAGGCACACTTGCTGCTGCGCTT
GCTGCCGCACTCGGGATGGTGGCAGCCCTCAATGCGGCCTTTGCGCTGGC
AAAGTCTGCAGCAGATGCGGGTGCACTGGCACCTGCAGCACTCATGGAAG
TGGGACTGGAACTTCTCCTTGCTGGAGAGTGCACGTCGCTGTATGAAGGA
GCACCGACAGCAGGAGACGATCCTCTGCGTGCTGAGGGTTGCGCTGTTGC
AGCGCCAGTTGATGCAGCAGCTGATGCAGCACTTGTTGCGCTTGAAGGAC
CAGCAGTACCTCTTAGAGCTGCTCTAGCAGCATCTAGGCCATCTGGCACG
CCGCTGTGTGAAGACCCAAGACTAGGAGACGATCCTCTTCGTGGCGAGTT
TCGCGCAGTCGCAGCACCAATTGATGCAGCAGCTGCTGCGCCACTTGTAG
CGTTAGAAGAACCAGCAACACCTCTCAGAGCGGCTATGGCAGCGGCGAGA
CCATCTGGCGTGCCGCTGCTTGAAGACCGCCGAAGACTAGGAGACGATCC
TCTCCTAGGAGACGATCCTCTTCGTGGTGAGTTTACTGCGGTCGCAGCAC
CAGCTGATGCAGAAGCTGCAGCCAAGAAAGCAGCAGCAGTGCGAGCTTCA
CGTTCAAGACTTGTCAGCAACGCAGCATCAATCTTGGTGAGGAAGCGTGG
CTTTATGTCTGTGTCTGGCAGCGCAGAGTACAACTGCTTGTCCACCCACC
GTCTGATGTCTTCCACATCAACAGAAGATGTGTACCCTGACCCTGTAGCA
TTCAGCAGGAGCAGTGACGTTCGAAGGCCGGGCGTCAACAGCTTGACGGT
GTCCAGCCCGTCCTCAATGGCCTTGTTGATTGAAACTGCACACTCGCTCG
GTGTGAACATCCCACCCATCATATTGTAGTGGTCCCATTCTTCTAGCGCC
TTGCTGGCCAATTTTGTATGGCTGTCAAGACCAGCGAATTTACCCAAGTA
CTTGTCCAGCTCTCTCCTGCAACTTTCGATTTCGTCACTTATCTCCTCAA
TGTCGGCGCTAGCGTCAAGCAGCAGTTCTTGCAGCGCTGTAACAATGTAA
GCTACCATGTTAAAGCAGACTGATTGTGCTCTTGCCTCTGCCATGGCCCA
CATGTGCATGGCACTGATGTTGACCGCATTGTCTACATTGAACGGGAGCA
GCGTTTTCTCGTCAGGTGTCAAATGATACAACTCAATGACGGCATCCCAC
AACTCCTGATCCCTCTCAGCAGTAAGGCGTAAAATGAGGTCACCAACCCC
GGCGGGCAGCGGCAGTATGCAGGCCGCGTATCTGGAACACATGTCCATGT
TGAGCCGATCGCTAGCTGCTTCGAGAGTGGCTTCCACGTGTGCAGGAGTC
ATCCTAGCAAAGTCCTCAAATGACTCAAATTTCAACATCAGGTCCATATC
CTCGTCCATGTCATACATTGCATTTGCGGTTGAAACAGGGTCTTTCGGAT
CGAAATACTGATTCAAAGCGCCACGCATTATTATATTGCTTAACAGCAGG
CACAGAAAAAAATATCTCAAAACAATAGTTCAATTGTCACGTCACTTCCT
ACTGACCAAACACACCATTGCATACCAGCAGCGTGATCAGCGATGGAGAC
GCCATTATCCTCTGACGCGTGGACATGGATCACGGCTTTTCTCGGCGAGG
GTCATTATCTGTTGGCGTCGCTGTGCAAGTGTGCGCAGGAAGCGTATCGT
GCTCAGCATGAAGCCTACACTTTCACCCGGCACATTACATCAAGTAGGTC
ACAATTGGCATGGGGGGTGGCATGTGGTGCTCCTGTCACGGAGCATCTGC
ACGAAAAAGCATGCGCTGCAGGATGTTTGGATGCGCTGAGGTATTTGACT
CTGTTAAAGTGCCCTGCAGGTGTCAGCAGCAGTGCGGTGGCAGCAAGCTC
TGGCAATTTGCAATTGATGAGCTATTTAAGGGCACAGAAGACGCCCATCG
ACTCCTCTGCTGCAGAAGCCGCAGCAGAAGCGGGGCACTTTGCCATGTTC
AGGAGGTTGAGGTGGCTGACCGCAGGAGATGATGACGGCCCAGACTGGCT
GTGTGCCGCAGTCGAGGGAGGCAACCCCCGCCTTGTCAGGCACTTGCTGT
CGAGCCATTACTGGTCTGATGCTCATACGATCACGCATGCAGCCGCAAAG
TCTCTTGAGCTCGTCAAAATGTTACGGGAGGATGATGATTGCGAGTGGGA
TGCGAGAGCGGGCAATGCAGCAGCACACGCAGGCCTCATCGATGTTTTGG
ACTATCTGAGTGGGAGTGGCTGCGAAATAGAAGGAAATATACACAGCATA
GCTGCCAAGAGCGGACACGTACACGTCATGAGATGGGCGCACCAGAAGGG
GATTGCAATGGACGAGGAATGGTTTTGGCGTCACCTGCACGGAGCGCAAG
TCACGCTCGGCGTGGCGCAGTATCTCGCTGACGAGGGCCATCTTGATAGC
ATGCTGCTGCATGATGCGAGTGTAGCGCCCGGAGCGACATGTCGGGAGGC
GCACGAAGCTGTACAGTGGATGAAAGGCGCTGGCATACCGGTCACATCCA
AAGTGTGCGTAACAGCAGCGCGGGACGGCAATCTGTCAGTGCTAGCTGCG
TTGAGATCTATGAACGTCACCTGGGATGAGCAGGTGTGCACCAGCGCAGC
GGAACACGCTCACCTACACGTTCTCAAGTGGGCCATTAAGAACGGATGCC
CATACTCTGCCCCCGACCTCACCTTTGCAGCACTCACATCCTGCAACATG
GCTGTCATACAGTACTTGTCGGATCAGCAGCTTCTCACACCGCCTAGCAT
ACTAGGGTATCATGAGATGATGCGTGTAACAGAGGCATGCGACACACAGC
GCCTGTCGAGATGGCTGCTCAAGCACGGATATCAGTAA
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Coding sequence (CDS) from alignment at Contig_18:995907..999194-

>mRNA_1416 ID=mRNA_1416|Name=jgi.p|Trimin1|161769|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=858bp|location=Sequence derived from alignment at Contig_18:995907..999194- (Tribonema minus UTEX_B_3156 )
CCTGCTGGCGCACCTTGGCATGTTGTGATTTGTGAAGCCGCAGCAGAAGC
GGGGCACTTTGCCATGTTCAGGAGGTTGAGGTGGCTGACCGCAGGAGATG
ATGACGGCCCAGACTGGCTGTGTGCCGCAGTCGAGGGAGGCAACCCCCGC
CTTGTCAGGCACTTGCTGTCGAGCCATTACTGGTCTGATGCTCATACGAT
CACGCATGCAGCCGCAAAGTCTCTTGAGCTCGTCAAAATGTTACGGGAGG
ATGATGATTGCGAGTGGGATGCGAGAGCGGGCAATGCAGCAGCACACGCA
GGCCTCATCGATGTTTTGGACTATCTGAGTGGGAGTGGCTGCGAAATAGA
AGGAAATATACACAGCATAGCTGCCAAGAGCGGACACGTACACGTCATGA
GATGGGCGCACCAGAAGGGGATTGCAATGGACGAGGAATGGTTTTGGCGT
CACCTGCACGGAGCGCAAGCGCACGAAGCTGTACAGTGGATGAAAGGCGC
TGGCATACCGGTCACATCCAAAGTGTGCGTAACAGCAGCGCGGGACGGCA
ATCTGTCAGTGCTAGCTGCGTTGAGATCTATGAACGTCACCTGGGATGAG
CAGGTGTGCACCAGCGCAGCGGAACACGCTCACCTACACGTTCTCAAGTG
GGCCATTAAGAACGGATGCCCATACTCTGCCCCCGACCTCACCTTTGCAG
CACTCACATCCTGCAACATGGCTGTCATACAGTACTTGTCGGATCAGCAG
CTTCTCACACCGCCTAGCATACTAGGGTATCATGAGATGATGCGTGTAAC
AGAGGCATGCGACACACAGCGCCTGTCGAGATGGCTGCTCAAGCACGGAT
ATCAGTAA
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