mRNA_14139 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|352597
Unique NamemRNA_14139
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|352597 vs. uniprot
Match: A0A835ZG41_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG41_9STRA)

HSP 1 Score: 242 bits (617), Expect = 1.180e-80
Identity = 118/122 (96.72%), Postives = 118/122 (96.72%), Query Frame = 1 
Query:   55 MRAGGMAAAXXXXGAAMLCNHVAEGWSPAALRATSALHGALHFRGALGRKHRSSRAATFMLSDSLGEVGEFRIKGEGHWAGVMQRFSFTDETGKFAVPEPYSTDGPPLPYSLEMHRCGLDTY 420
            MRAGGMAAA    GAAMLCNHVAEGWSPAALRATSALHGALHFRGALGRKHRSSRAATFMLSDSLGEVGEFRIKGEGHWAGVMQRFSFTDETGKFAVPEPYSTDGPPLPYSLEMHRCGLDTY
Sbjct:    1 MRAGGMAAAAAAAGAAMLCNHVAEGWSPAALRATSALHGALHFRGALGRKHRSSRAATFMLSDSLGEVGEFRIKGEGHWAGVMQRFSFTDETGKFAVPEPYSTDGPPLPYSLEMHRCGLDTY 122
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352597 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835ZG41_9STRA1.180e-8096.72Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_125contigContig_125:104051..104879 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|352597|estExt_Genemark1.C_Ctg_1250011
Hectar predicted targeting categoryother localisation
TranscriptId352919
TrackFilteredModels1
ProteinId352597
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352597gene_14139Tribonema minus UTEX_B_3156 geneContig_125 104051..104879 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14139_1exon_14139_1Tribonema minus UTEX_B_3156 exonContig_125 104051..104309 +
exon_14139_2exon_14139_2Tribonema minus UTEX_B_3156 exonContig_125 104717..104879 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_14139UTR5_14139Tribonema minus UTEX_B_3156 five_prime_UTRContig_125 104051..104104 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14139CDS_14139Tribonema minus UTEX_B_3156 CDSContig_125 104105..104309 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_14139UTR3_14139Tribonema minus UTEX_B_3156 three_prime_UTRContig_125 104878..104879 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352597Trimin1|352597|estExt_Genemark1.C_Ctg_1250011Tribonema minus UTEX_B_3156 polypeptideContig_125 104105..104877 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14139 ID=mRNA_14139|Name=jgi.p|Trimin1|352597|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=422bp|location=Sequence derived from alignment at Contig_125:104051..104879+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GCCGGGGGGAGTCAGAGAGAGCCAAAGACGGAACTTGAAGCAGGGTGAAA
CAACATGAGAGCAGGTGGCATGGCTGCCGCTGCAGCGGCTGCGGGCGCGG
CGATGCTTTGCAATCATGTGGCAGAAGGCTGGTCACCAGCTGCGTTGAGA
GCCACTTCAGCGTTGCATGGTGCTCTGCACTTCCGTGGTGCCTTGGGGAG
GAAGCACCGCAGTTCTCGTGCTGCTACTTTCATGCTCAGCGACAGCTTGG
GAGAAGTTGGCGAGTTCAGAATCAAGGGGGAGGGGCACTGGGCAGGAGTA
ATGCAGCGATTTTCATTCACCGACGAAACTGGCAAATTTGCGGTGCCGGA
GCCGTACTCCACTGATGGGCCGCCGCTGCCCTACTCACTGGAGATGCACC
GCTGCGGTTTGGACACATACAG
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protein sequence of jgi.p|Trimin1|352597

>Trimin1|352597|estExt_Genemark1.C_Ctg_1250011 ID=Trimin1|352597|estExt_Genemark1.C_Ctg_1250011|Name=jgi.p|Trimin1|352597|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=122bp
MRAGGMAAAAAAAGAAMLCNHVAEGWSPAALRATSALHGALHFRGALGRK
HRSSRAATFMLSDSLGEVGEFRIKGEGHWAGVMQRFSFTDETGKFAVPEP
YSTDGPPLPYSLEMHRCGLDTY
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mRNA from alignment at Contig_125:104051..104879+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14139 ID=mRNA_14139|Name=jgi.p|Trimin1|352597|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=829bp|location=Sequence derived from alignment at Contig_125:104051..104879+ (Tribonema minus UTEX_B_3156 )
GCCGGGGGGAGTCAGAGAGAGCCAAAGACGGAACTTGAAGCAGGGTGAAA
CAACATGAGAGCAGGTGGCATGGCTGCCGCTGCAGCGGCTGCGGGCGCGG
CGATGCTTTGCAATCATGTGGCAGAAGGCTGGTCACCAGCTGCGTTGAGA
GCCACTTCAGCGTTGCATGGTGCTCTGCACTTCCGTGGTGCCTTGGGGAG
GAAGCACCGCAGTTCTCGTGCTGCTACTTTCATGCTCAGCGACAGCTTGG
GAGAAGTTGGTGAGTGAAAGATCGTTTATGGCAACCAGACGTCACGCGTT
ATGCAGTGCTTGCAAGTTTCAGGTTTTGCTGAGGATCCATGCCCACGTGG
CGGTCGGTGTTTCATGCTGGTGACAGCGTAGATCATGCTGTGCTGAACTG
CAAGATTCTCAAGAAAGTGCCTTCTTGCTCGCTCGTCAGAATCCTGGTGT
ACAATGGGTGAGCAACCACGGCTTGCTTTTGGGTGAACCCCACGGGATAT
GCTGTTGCAGTGTCATGAGTGGAGCTTTTTTTCCATCGTGTCAGCTGTGC
TAGTGTTCGGCTCATCCCCACCCAAATGCACACCGCCGCTGCATGCCAGA
AACACATTGCACACGCTGCAAGCATCCACCTCAGACCCTTGCACCTTCTG
AATGACGTGCGCACAGGCGAGTTCAGAATCAAGGGGGAGGGGCACTGGGC
AGGAGTAATGCAGCGATTTTCATTCACCGACGAAACTGGCAAATTTGCGG
TGCCGGAGCCGTACTCCACTGATGGGCCGCCGCTGCCCTACTCACTGGAG
ATGCACCGCTGCGGTTTGGACACATACAG
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Coding sequence (CDS) from alignment at Contig_125:104051..104879+

>mRNA_14139 ID=mRNA_14139|Name=jgi.p|Trimin1|352597|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=366bp|location=Sequence derived from alignment at Contig_125:104051..104879+ (Tribonema minus UTEX_B_3156 )
ATGAGAGCAGGTGGCATGGCTGCCGCTGCAGCGGCTGCGGGCGCGGCGAT
GCTTTGCAATCATGTGGCAGAAGGCTGGTCACCAGCTGCGTTGAGAGCCA
CTTCAGCGTTGCATGGTGCTCTGCACTTCCGTGGTGCCTTGGGGAGGAAG
CACCGCAGTTCTCGTGCTGCTACTTTCATGCTCAGCGACAGCTTGGGAGA
AGTTGGCGAGTTCAGAATCAAGGGGGAGGGGCACTGGGCAGGAGTAATGC
AGCGATTTTCATTCACCGACGAAACTGGCAAATTTGCGGTGCCGGAGCCG
TACTCCACTGATGGGCCGCCGCTGCCCTACTCACTGGAGATGCACCGCTG
CGGTTTGGACACATAC
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