mRNA_1410 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|161669
Unique NamemRNA_1410
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|161669 vs. uniprot
Match: A0A836CJC1_9STRA (AAA domain-containing protein (Fragment) n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJC1_9STRA)

HSP 1 Score: 384 bits (985), Expect = 1.420e-134
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 1
Query:    1 MQAIDNLIRYSLGRLNLLTFVHTLLVQFLDTPLSFVQGYQHLMLVGPPGSGKSQYSNVLAQLYGALCIVADVDIKDGVARVKEKFPSDFIATYVGQTAPQTRDILVQSLEKVLLIDEAYGLTETGSSGKNKDDSYGHEAVNEIVSFLSTHMGQMIVIAAGYKEEMVKFRTSNVGLARRIPRVIQLAAIDGSTATRAFEL 597
            MQAIDNLIRYSLGRLNLLTFVHTLLVQFLDTPLSFVQGYQHLMLVGPPGSGKSQYSNVLAQLYGALCIVADVDIKDGVARVKEKFPSDFIATYVGQTAPQTRDILVQSLEKVLLIDEAYGLTETGSSGKNKDDSYGHEAVNEIVSFLSTHMGQMIVIAAGYKEEMVKFRTSNVGLARRIPRVIQLAAIDGSTATRAFEL
Sbjct:    1 MQAIDNLIRYSLGRLNLLTFVHTLLVQFLDTPLSFVQGYQHLMLVGPPGSGKSQYSNVLAQLYGALCIVADVDIKDGVARVKEKFPSDFIATYVGQTAPQTRDILVQSLEKVLLIDEAYGLTETGSSGKNKDDSYGHEAVNEIVSFLSTHMGQMIVIAAGYKEEMVKFRTSNVGLARRIPRVIQLAAIDGSTATRAFEL 199          
BLAST of jgi.p|Trimin1|161669 vs. uniprot
Match: A0A835Z2P4_9STRA (P-loop containing nucleoside triphosphate hydrolase protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2P4_9STRA)

HSP 1 Score: 271 bits (693), Expect = 9.430e-91
Identity = 135/154 (87.66%), Postives = 145/154 (94.16%), Query Frame = 1
Query:   85 LDTPLSFVQGYQHLMLVGPPGSGKSQYSNVLAQLYGALCIVADVDIKDGVARVKEKFPSDFIATYVGQTAPQTRDILVQSLEKVLLIDEAYGLTETGSSGKNKDDSYGHEAVNEIVSFLSTHMGQMIVIAAGYKEEMVKFRTSNVGLARRIPRV 546
            +D PLSFVQGYQH+MLVGPPGSGKSQ+SN+LAQLYGALCIVADV+  +GVARV EKFPSDFIA YVGQTAPQTRD+LVQSLEKVL IDEAYGLTETGS   +KDDSYGHEAVNEIV+FLSTH+GQMIVIAAGYKEEMVKFRTSNVGLARRIPRV
Sbjct:    1 MDKPLSFVQGYQHIMLVGPPGSGKSQFSNILAQLYGALCIVADVNTVNGVARVNEKFPSDFIAGYVGQTAPQTRDVLVQSLEKVLFIDEAYGLTETGSGKSSKDDSYGHEAVNEIVAFLSTHVGQMIVIAAGYKEEMVKFRTSNVGLARRIPRV 154          
BLAST of jgi.p|Trimin1|161669 vs. uniprot
Match: A0A836CPV8_9STRA (ATPase_AAA_core domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPV8_9STRA)

HSP 1 Score: 184 bits (466), Expect = 2.620e-56
Identity = 89/151 (58.94%), Postives = 123/151 (81.46%), Query Frame = 1
Query:   85 LDTPLSFVQGYQHLMLVGPPGSGKSQYSNVLAQLYGALCIVADVDIKDGVARVKEKFPSDFIATYVGQTAPQTRDILVQSLEKVLLIDEAYGLTETGSSGKNKDDSYGHEAVNEIVSFLSTHMGQMIVIAAGYKEEMVKFRTSNVGLARRI 537
            +D P +F++G+Q+L+LVG PGSGK++Y+N LAQ++ AL IV +VD  +G A V+EK P+DFI  Y+GQTAP+TR +L++S EKVL IDEAYG+TE     + K + YG EAVNE+V +LSTH+GQ+IVIAAGY+EEM++F+ +NVGLARR+
Sbjct:    1 MDAPKAFLEGFQNLILVGNPGSGKTEYANRLAQVFSALNIVCNVDTHEGSAVVREKVPTDFIGQYIGQTAPRTRALLLESTEKVLFIDEAYGITEN----EKKGEEYGQEAVNELVGYLSTHIGQLIVIAAGYEEEMMRFQVNNVGLARRM 147          
BLAST of jgi.p|Trimin1|161669 vs. uniprot
Match: A0A651H0I3_9ACTN (AAA family ATPase n=2 Tax=Nitriliruptor sp. TaxID=2448056 RepID=A0A651H0I3_9ACTN)

HSP 1 Score: 105 bits (261), Expect = 8.590e-23
Identity = 60/154 (38.96%), Postives = 87/154 (56.49%), Query Frame = 1
Query:   88 DTPLSFVQGYQHLMLVGPPGSGKSQYSNVLAQLYGALCIVADVDIKDGVARVKEKFPSDFIATYVGQTAPQTRDILVQSLEKVLLIDEAYGLTETGSSGKNKDDSYGHEAVNEIVSFLSTHMGQMIVIAAGYKEEMVKFRTSNVGLARRIPRVI 549
            D  L+ V   +HL+  G PG+GK+  + ++ ++Y +L  VA          V E   +  +A YVGQTA +  +++  +L+ VLLIDEAY LT  GS G      +G EAV+ +V  +  H  +++VI AGY EEM  F  SN GL+ R PR I
Sbjct:  308 DRGLTSVPTSRHLVFTGNPGTGKTTVARLVGRIYASLGAVAS-------GHVVETDRAGLVAGYVGQTAAKVTEVVTSALDGVLLIDEAYALTR-GSGGAAGGGDFGQEAVDTLVKLMEDHRDRLVVIVAGYPEEMTDFIASNPGLSSRFPRTI 453          
BLAST of jgi.p|Trimin1|161669 vs. uniprot
Match: A0A1Q3H3E3_9BACT (Uncharacterized protein n=2 Tax=Cytophagales TaxID=768507 RepID=A0A1Q3H3E3_9BACT)

HSP 1 Score: 104 bits (260), Expect = 1.600e-22
Identity = 58/144 (40.28%), Postives = 87/144 (60.42%), Query Frame = 1
Query:  121 HLMLVGPPGSGKSQYSNVLAQLYGALCIVADVDIKDGVARVKEKFPSDFIATYVGQTAPQTRDILVQSLEKVLLIDEAYGLTETGSSGKNKDDSYGHEAVNEIVSFLSTHMGQMIVIAAGYKEEMVKFRTSNVGLARRIPRVIQ 552
            HL+  G PG+GK+  + ++ + + AL +V     K  V  V+    +D +A YVGQTA +TR+++ Q+L+ +L IDEAY LT +   G   D  YG EAVN +++ +  H  +++VIAAGY EEM +F  SN GL  R    +Q
Sbjct:  640 HLVFTGNPGTGKTTVARIVGKAFKALGVVK----KGHVVEVQR---ADLVAGYVGQTAIKTREVIEQALDGILFIDEAYTLTRSSGGGDTTD--YGQEAVNTLLAMMENHRDRLVVIAAGYPEEMQQFIESNPGLQSRFTNYLQ 774          
BLAST of jgi.p|Trimin1|161669 vs. uniprot
Match: A0A2S8BF86_9MYCO (ESX-3 secretion system protein EccA3 n=1 Tax=Mycobacterium talmoniae TaxID=1858794 RepID=A0A2S8BF86_9MYCO)

HSP 1 Score: 103 bits (257), Expect = 3.390e-22
Identity = 58/151 (38.41%), Postives = 93/151 (61.59%), Query Frame = 1
Query:  121 HLMLVGPPGSGKSQYSNVLAQLYGALCIVADVDIKDGVARVKEKFPSDFIATYVGQTAPQTRDILVQSLEKVLLIDEAYGLTETGSSGKNKDDSYGHEAVNEIVSFLSTHMGQMIVIAAGYKEEMVKFRTSNVGLARRIPRVIQLAAIDGS 573
            HL+  GPPG+GK+  + V+AQLY  L ++         A+V E   +DF+A ++GQTA +T  ++  +L+ VL IDEAY L +TG SG    D++G EAV+ +++ +     +++VI AGY +E+ +F  +N GLA R P+ I   + D +
Sbjct:  348 HLVFTGPPGTGKTTIARVIAQLYCGLGVLPQ-------AKVLEVKRADFVAGFLGQTAAKTDALIDAALDGVLFIDEAYTLIQTGLSG---GDAFGREAVDTLLARMENDRHRLMVIIAGYDDEINRFLAANEGLASRFPKRINFPSYDAA 488          
BLAST of jgi.p|Trimin1|161669 vs. uniprot
Match: A0A853BHZ9_9ACTN (SpoVK/Ycf46/Vps4 family AAA+-type ATPase n=3 Tax=Nocardiopsaceae TaxID=83676 RepID=A0A853BHZ9_9ACTN)

HSP 1 Score: 103 bits (256), Expect = 5.450e-22
Identity = 58/161 (36.02%), Postives = 90/161 (55.90%), Query Frame = 1
Query:  109 QGYQHLMLVGPPGSGKSQYSNVLAQLYGALCIVADVDIKDGVARVKEKFPSDFIATYVGQTAPQTRDILVQSLEKVLLIDEAYGLTETGSSGKNKDDSYGHEAVNEIVSFLSTHMGQMIVIAAGYKEEMVKFRTSNVGLARRIPRVIQLAAIDGSTATRAF 591
            Q  +HL+  G PG+GK+  + +  +L  A+ ++A   + + VAR      +D +A YVG TA QTR++  ++   VL IDEAY LT +G  G +    +G EAV+ ++  +  H  +++VI AGY +EM +F  SN GLA R  R +  A+       R F
Sbjct:  865 QPSRHLVFTGAPGTGKTTVARIYGELLAAMGVLAQGQVVE-VAR------ADLVAGYVGHTAQQTREVFERARGGVLFIDEAYSLTRSGGGGAD----FGREAVDTLIKLMEDHRDEVVVIVAGYTDEMAEFLRSNPGLASRFSRTVTFASYTPDELVRIF 1014          
BLAST of jgi.p|Trimin1|161669 vs. uniprot
Match: A0A317N5W4_9NOCA (Type VII secretion ATPase EccA n=1 Tax=Nocardia neocaledoniensis TaxID=236511 RepID=A0A317N5W4_9NOCA)

HSP 1 Score: 102 bits (254), Expect = 8.370e-22
Identity = 56/152 (36.84%), Postives = 96/152 (63.16%), Query Frame = 1
Query:  118 QHLMLVGPPGSGKSQYSNVLAQLYGALCIVADVDIKDGVARVKEKFPSDFIATYVGQTAPQTRDILVQSLEKVLLIDEAYGLTETGSSGKNKDDSYGHEAVNEIVSFLSTHMGQMIVIAAGYKEEMVKFRTSNVGLARRIPRVIQLAAIDGS 573
            QHL+  GPPG+GK+  + V+A+++  L +V + D+ + V+R      +D + T++G TAP+T  ++  +L  VL IDEAY L + G SG    D++G EAV+ +++ +     +++VI AGY++++ +F  SN GLA R  + I+ A+ D S
Sbjct:  342 QHLIFSGPPGTGKTTIARVIAKIFAGLGVVENADVIE-VSR------NDMVGTHLGHTAPKTNALIDSALGGVLFIDEAYTLIQEGLSG---GDAFGKEAVDTLLARMENDRDKLVVIIAGYEDQIDRFLASNDGLASRFTKRIRFASYDAS 483          
BLAST of jgi.p|Trimin1|161669 vs. uniprot
Match: UPI001C2136FE (type VII secretion AAA-ATPase EccA n=1 Tax=Nocardia sp. ncl2 TaxID=2815723 RepID=UPI001C2136FE)

HSP 1 Score: 102 bits (253), Expect = 1.140e-21
Identity = 56/156 (35.90%), Postives = 94/156 (60.26%), Query Frame = 1
Query:  118 QHLMLVGPPGSGKSQYSNVLAQLYGALCIVADVDIKDGVARVKEKFPSDFIATYVGQTAPQTRDILVQSLEKVLLIDEAYGLTETGSSGKNKDDSYGHEAVNEIVSFLSTHMGQMIVIAAGYKEEMVKFRTSNVGLARRIPRVIQLAAIDGSTATR 585
            QHL+  GPPG+GK+  + V+A+++  L +V + D       V E   +D + T++G TAP+T  ++  +L  VL IDEAY L + G SG    D++G EAV+ +++ +     +++VI AGY++++ +F TSN GL+ R  + I+ A+  G    R
Sbjct:  342 QHLIFSGPPGTGKTTIARVIAKIFAGLGVVENPD-------VVEASRNDMVGTHLGHTAPKTNALIDSALGGVLFIDEAYTLIQEGLSG---GDAFGKEAVDTLLARMENDRDKLVVIIAGYEDQIDRFLTSNEGLSSRFTKRIRFASYTGDELVR 487          
BLAST of jgi.p|Trimin1|161669 vs. uniprot
Match: A0A2M9IB63_9ACTN (AAA domain-containing protein n=1 Tax=Streptomyces sp. CB01373 TaxID=2020325 RepID=A0A2M9IB63_9ACTN)

HSP 1 Score: 99.8 bits (247), Expect = 1.270e-21
Identity = 54/144 (37.50%), Postives = 83/144 (57.64%), Query Frame = 1
Query:  121 HLMLVGPPGSGKSQYSNVLAQLYGALCIVADVDIKDGVARVKEKFPSDFIATYVGQTAPQTRDILVQSLEKVLLIDEAYGLTETGSSGKNKDDSYGHEAVNEIVSFLSTHMGQMIVIAAGYKEEMVKFRTSNVGLARRIPRVIQ 552
            HL+  GPPG+GK+  + + A+L  +L ++         AR+ E   +D +  YVG TA  T+++   +L  VL  DEAY LT  G+SG    + +G EAV+ ++  +  H  +++VI AGY EEM +F  SN GLA R  R ++
Sbjct:   90 HLVFTGPPGTGKTTVARLYAELLHSLGVLP-------AARLVEVTRADLVGQYVGHTAQLTKEVFTSALGGVLFFDEAYTLTPEGASG----NGFGREAVDTLLKLMEDHREEIVVIVAGYTEEMERFLASNPGLASRFSRTVE 222          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|161669 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CJC1_9STRA1.420e-134100.00AAA domain-containing protein (Fragment) n=2 Tax=T... [more]
A0A835Z2P4_9STRA9.430e-9187.66P-loop containing nucleoside triphosphate hydrolas... [more]
A0A836CPV8_9STRA2.620e-5658.94ATPase_AAA_core domain-containing protein (Fragmen... [more]
A0A651H0I3_9ACTN8.590e-2338.96AAA family ATPase n=2 Tax=Nitriliruptor sp. TaxID=... [more]
A0A1Q3H3E3_9BACT1.600e-2240.28Uncharacterized protein n=2 Tax=Cytophagales TaxID... [more]
A0A2S8BF86_9MYCO3.390e-2238.41ESX-3 secretion system protein EccA3 n=1 Tax=Mycob... [more]
A0A853BHZ9_9ACTN5.450e-2236.02SpoVK/Ycf46/Vps4 family AAA+-type ATPase n=3 Tax=N... [more]
A0A317N5W4_9NOCA8.370e-2236.84Type VII secretion ATPase EccA n=1 Tax=Nocardia ne... [more]
UPI001C2136FE1.140e-2135.90type VII secretion AAA-ATPase EccA n=1 Tax=Nocardi... [more]
A0A2M9IB63_9ACTN1.270e-2137.50AAA domain-containing protein n=1 Tax=Streptomyces... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_18contigContig_18:972971..973567 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|161669|e_gw1.18.115.1
DescriptionRight handed beta helix region
COG categoryO
Max annot lvl201174|Actinobacteria
EggNOG OGsCOG0464@1|root,COG0464@2|Bacteria,2GJWA@201174|Actinobacteria,4EM6C@85012|Streptosporangiales
Evalue4.84e-23
Seed ortholog446468.Ndas_1627
Hectar predicted targeting categoryother localisation
TranscriptId161991
TrackFilteredModels1
ProteinId161669
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161669gene_1410Tribonema minus UTEX_B_3156 geneContig_18 972971..973567 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1410_1exon_1410_1Tribonema minus UTEX_B_3156 exonContig_18 972971..973567 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1410CDS_1410Tribonema minus UTEX_B_3156 CDSContig_18 972971..973567 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161669Trimin1|161669|e_gw1.18.115.1Tribonema minus UTEX_B_3156 polypeptideContig_18 972971..973567 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1410 ID=mRNA_1410|Name=jgi.p|Trimin1|161669|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=597bp|location=Sequence derived from alignment at Contig_18:972971..973567+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGGCCATTGACAACCTCATTAGGTACTCGCTGGGGCGTCTGAACCT
GCTTACGTTTGTCCACACACTGCTTGTGCAGTTCCTGGACACACCGCTAA
GCTTTGTGCAAGGGTATCAGCACTTAATGCTTGTAGGTCCCCCTGGTTCC
GGCAAGTCTCAGTATTCTAACGTTTTGGCACAACTCTATGGCGCTCTGTG
CATCGTTGCAGACGTGGACATCAAGGACGGTGTTGCGCGAGTGAAGGAGA
AATTTCCTTCTGATTTCATTGCAACTTATGTGGGCCAAACAGCCCCGCAA
ACACGTGATATACTGGTGCAATCACTGGAAAAAGTGCTTCTCATAGATGA
AGCTTACGGCTTGACTGAAACGGGATCTTCTGGCAAAAACAAGGATGACA
GTTACGGGCATGAAGCTGTCAATGAAATCGTCAGCTTCTTAAGCACTCAC
ATGGGCCAGATGATTGTGATTGCCGCAGGCTACAAGGAGGAGATGGTGAA
GTTCCGTACAAGCAATGTTGGCCTGGCACGACGTATCCCTCGAGTAATTC
AGCTTGCAGCCATTGATGGTTCCACTGCAACACGGGCATTTGAACTG
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protein sequence of jgi.p|Trimin1|161669

>Trimin1|161669|e_gw1.18.115.1 ID=Trimin1|161669|e_gw1.18.115.1|Name=jgi.p|Trimin1|161669|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=199bp
MQAIDNLIRYSLGRLNLLTFVHTLLVQFLDTPLSFVQGYQHLMLVGPPGS
GKSQYSNVLAQLYGALCIVADVDIKDGVARVKEKFPSDFIATYVGQTAPQ
TRDILVQSLEKVLLIDEAYGLTETGSSGKNKDDSYGHEAVNEIVSFLSTH
MGQMIVIAAGYKEEMVKFRTSNVGLARRIPRVIQLAAIDGSTATRAFEL
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mRNA from alignment at Contig_18:972971..973567+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1410 ID=mRNA_1410|Name=jgi.p|Trimin1|161669|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=597bp|location=Sequence derived from alignment at Contig_18:972971..973567+ (Tribonema minus UTEX_B_3156 )
ATGCAGGCCATTGACAACCTCATTAGGTACTCGCTGGGGCGTCTGAACCT GCTTACGTTTGTCCACACACTGCTTGTGCAGTTCCTGGACACACCGCTAA GCTTTGTGCAAGGGTATCAGCACTTAATGCTTGTAGGTCCCCCTGGTTCC GGCAAGTCTCAGTATTCTAACGTTTTGGCACAACTCTATGGCGCTCTGTG CATCGTTGCAGACGTGGACATCAAGGACGGTGTTGCGCGAGTGAAGGAGA AATTTCCTTCTGATTTCATTGCAACTTATGTGGGCCAAACAGCCCCGCAA ACACGTGATATACTGGTGCAATCACTGGAAAAAGTGCTTCTCATAGATGA AGCTTACGGCTTGACTGAAACGGGATCTTCTGGCAAAAACAAGGATGACA GTTACGGGCATGAAGCTGTCAATGAAATCGTCAGCTTCTTAAGCACTCAC ATGGGCCAGATGATTGTGATTGCCGCAGGCTACAAGGAGGAGATGGTGAA GTTCCGTACAAGCAATGTTGGCCTGGCACGACGTATCCCTCGAGTAATTC AGCTTGCAGCCATTGATGGTTCCACTGCAACACGGGCATTTGAACTG
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Coding sequence (CDS) from alignment at Contig_18:972971..973567+

>mRNA_1410 ID=mRNA_1410|Name=jgi.p|Trimin1|161669|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=597bp|location=Sequence derived from alignment at Contig_18:972971..973567+ (Tribonema minus UTEX_B_3156 )
ATGCAGGCCATTGACAACCTCATTAGGTACTCGCTGGGGCGTCTGAACCT
GCTTACGTTTGTCCACACACTGCTTGTGCAGTTCCTGGACACACCGCTAA
GCTTTGTGCAAGGGTATCAGCACTTAATGCTTGTAGGTCCCCCTGGTTCC
GGCAAGTCTCAGTATTCTAACGTTTTGGCACAACTCTATGGCGCTCTGTG
CATCGTTGCAGACGTGGACATCAAGGACGGTGTTGCGCGAGTGAAGGAGA
AATTTCCTTCTGATTTCATTGCAACTTATGTGGGCCAAACAGCCCCGCAA
ACACGTGATATACTGGTGCAATCACTGGAAAAAGTGCTTCTCATAGATGA
AGCTTACGGCTTGACTGAAACGGGATCTTCTGGCAAAAACAAGGATGACA
GTTACGGGCATGAAGCTGTCAATGAAATCGTCAGCTTCTTAAGCACTCAC
ATGGGCCAGATGATTGTGATTGCCGCAGGCTACAAGGAGGAGATGGTGAA
GTTCCGTACAAGCAATGTTGGCCTGGCACGACGTATCCCTCGAGTAATTC
AGCTTGCAGCCATTGATGGTTCCACTGCAACACGGGCATTTGAACTG
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