mRNA_14075 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|168258 vs. uniprot
Match: A0A835YYJ4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYJ4_9STRA) HSP 1 Score: 335 bits (859), Expect = 2.120e-116 Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 1 Query: 1 MVSPLIACLPQINLLAFDFDQTLVDVHTFGRWQDSEAELAKHVRPFFRELVLAGAEHGMHMAVVTFSAQVSIIRGVLHEAFGEEIASRIVIRGADGSWTYTGRGACEGKQAHIASAAEELTQFTRCSTLLFDDDEHNVRAALDAGVRAVLCDTHDPHAMVRDLIALS 501 MVSPLIACLPQINLLAFDFDQTLVDVHTFGRWQDSEAELAKHVRPFFRELVLAGAEHGMHMAVVTFSAQVSIIRGVLHEAFGEEIASRIVIRGADGSWTYTGRGACEGKQAHIASAAEELTQFTRCSTLLFDDDEHNVRAALDAGVRAVLCDTHDPHAMVRDLIALS Sbjct: 1 MVSPLIACLPQINLLAFDFDQTLVDVHTFGRWQDSEAELAKHVRPFFRELVLAGAEHGMHMAVVTFSAQVSIIRGVLHEAFGEEIASRIVIRGADGSWTYTGRGACEGKQAHIASAAEELTQFTRCSTLLFDDDEHNVRAALDAGVRAVLCDTHDPHAMVRDLIALS 167
BLAST of jgi.p|Trimin1|168258 vs. uniprot
Match: A0A7S1U168_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U168_9STRA) HSP 1 Score: 152 bits (384), Expect = 3.100e-43 Identity = 80/158 (50.63%), Postives = 103/158 (65.19%), Query Frame = 1 Query: 31 QINLLAFDFDQTLVDVHTFGRWQDSEAELAKHVRPFFRELVLAGAEHGMHMAVVTFSAQVSIIRGVLHEAFGEEIASRIVIRGADGSWTYTGRGACEGKQAHIASAAEELT-----QFTRCSTLLFDDDEHNVRAALDAGVRAVLCDTHDPHAMVRDL 489 Q+NLLA DFD TL+ HT G+W S ELA +VR FF+ ++ A E G+H+AVVTF+ Q ++ GVL AFG ++A++I +RG D SW Y G G C GKQ H+ASAAEEL R +TLL DDD NVR AL+ GVRA+L P + RD+ Sbjct: 65 QVNLLAVDFDCTLISTHTGGQWSYSCEELAAYVRDFFKLMIPAAIETGLHVAVVTFTPQTHLVHGVLKAAFGADVAAKIPVRGDDKSWEYRGDGVCCGKQGHMASAAEELMVMHDIHIERGTTLLVDDDISNVRLALEHGVRAILFKPDSPEDIARDI 222
BLAST of jgi.p|Trimin1|168258 vs. uniprot
Match: B7FWS8_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FWS8_PHATC) HSP 1 Score: 147 bits (372), Expect = 4.100e-42 Identity = 76/160 (47.50%), Postives = 103/160 (64.38%), Query Frame = 1 Query: 34 INLLAFDFDQTLVDVHTFGRWQDSEAELAKHVRPFFRELVLAGAEHGMHMAVVTFSAQVSIIRGVLHEAFGEEIASRIVIRGADGSWTYTGRGACEGKQAHIASAAEELTQ-----FTRCSTLLFDDDEHNVRAALDAGVRAVLCDTHDPHAMVRDLIAL 498 +N LA DFD T++D HT GRW S EL HVR F++L+ A + + +AVVTF+AQ+S ++GVL G E A+RI IRG D +W+Y G G+ +GKQA+IASA EEL Q T+ +T+L DDD N+ AL G RA+ + PH ++RDL L Sbjct: 20 VNFLAIDFDMTILDTHTGGRWVGSLEELLGHVRHEFKQLITASLQKNIRVAVVTFTAQISFVKGVLEAIVGPEEAARIPIRGNDRTWSYQGNGSRDGKQAYIASAVEELEQSGDAKITKSTTVLIDDDRRNIHHALSDGTRAIWFNPDKPHHLLRDLARL 179
BLAST of jgi.p|Trimin1|168258 vs. uniprot
Match: A0A6S9F1B3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9F1B3_HETAK) HSP 1 Score: 143 bits (361), Expect = 3.690e-40 Identity = 76/161 (47.20%), Postives = 100/161 (62.11%), Query Frame = 1 Query: 34 INLLAFDFDQTLVDVHTFGRWQDSEAELAKHVRPFFRELVLAGAEHGMHMAVVTFSAQVSIIRGVLHEAFGEEIASRIVIRGADGSWTYTGRGACEGKQAHIASAAEELTQ--------FTRCSTLLFDDDEHNVRAALDAGVRAVLCDTHDPHAMVRDLI 492 +N LA DFD T++DVHT GRW A+L H+RP FR L+ A + G+ A+VTFS QV +I VL EAF + +I IRG DGSW Y G G+ GKQAH+ASA EEL TR +T+L DDD +NV AL GV+A C+ DP ++ + ++ Sbjct: 42 LNFLALDFDLTVLDVHTGGRWLGRAADLTPHIRPLFRHLIPAALDAGLKTAIVTFSPQVHMISAVLEEAFPGK-GGQITIRGEDGSWEYEGAGSTAGKQAHMASAVEELVARAGPDAPTITRATTVLVDDDLNNVSIALQEGVKAYWCNPDDPDSLTQAML 201
BLAST of jgi.p|Trimin1|168258 vs. uniprot
Match: A0A7S4EE98_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EE98_9STRA) HSP 1 Score: 138 bits (348), Expect = 1.340e-38 Identity = 77/160 (48.12%), Postives = 99/160 (61.88%), Query Frame = 1 Query: 34 INLLAFDFDQTLVDVHTFGRWQDSEAELAKHVRPFFRELVLAGAEHGMHMAVVTFSAQVSIIRGVLHEAFGEEIASRIVIRGADGSWTYTGRGACEGKQAHIASAAEELT-----QFTRCSTLLFDDDEHNVRAALDAGVRAVLCDTHDPHAMVRDLIAL 498 IN LA DFD TL+D HT GRW + +EL +HVRP R+L+ + M +A+VT S Q S+IR V F ++ I+IRG DG+W Y G+G+ GKQ HIASA EEL+ Q +R STLL DDD N+ AL GV A+L HDP + R + AL Sbjct: 10 INFLAVDFDMTLIDRHTEGRWSGTASELLRHVRPEMRQLLRDALDAQMFVAIVTLSPQTSLIREVTRLLFPKDF-QLIIIRGNDGNWFYGGQGSSRGKQPHIASAVEELSHAHAAQISRRSTLLIDDDAQNINDALVNGVNAILYAPHDPSCLQRGVAAL 168
BLAST of jgi.p|Trimin1|168258 vs. uniprot
Match: A0A7S1G1M2_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1G1M2_9STRA) HSP 1 Score: 139 bits (349), Expect = 2.250e-38 Identity = 77/162 (47.53%), Postives = 100/162 (61.73%), Query Frame = 1 Query: 34 INLLAFDFDQTLVDVHTFGRWQDSEAELAKHVRPFFRELVLAGAEHGMHMAVVTFSAQVSIIRGVLHEAFGEEIASRIVIRGADGSWTYTGRGACEGKQAHIASAAEELT------QFTRCSTLLFDDDEHNVRAALDAGVRAVLCDTHDPHAMVRDLIALS 501 IN LA DFD T +DVHT G+W+ + ELA H+RP F+ L+ + +A+VTFS QV I VL + F E SRI IRG D SWTY G G +GKQ+H+ASAAEEL Q ++ STLL DDD +N+R A VRA+ + PH ++ D+ LS Sbjct: 41 INFLALDFDLTTIDVHTGGKWEGTPDELASHIRPIFKHLIARAHAANIAIAIVTFSPQVRHIGSVLDKTF-PEFGSRIPIRGRDRSWTYEGVGCKDGKQSHMASAAEELMTTNAGLQISKDSTLLIDDDANNIRTAFRDHVRAIWLNPDKPHRVLDDIDRLS 201
BLAST of jgi.p|Trimin1|168258 vs. uniprot
Match: A0A7S0CHW4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CHW4_9STRA) HSP 1 Score: 133 bits (334), Expect = 9.990e-37 Identity = 77/148 (52.03%), Postives = 97/148 (65.54%), Query Frame = 1 Query: 25 LPQINLLAFDFDQTLVDVHTFGRWQDSEAELAKHVRPFFRELVLAGAEHG-MHMAVVTFSAQVSIIRGVLHEAFGEEIASRIVIRGADGSWTYTGRGACEGKQAHIASAAEEL------TQFTRCSTLLFDDDEHNVRAALDAGVRAV 447 L +IN LA DFD T++DVHT G W+ + ELA HVRP F++LV A +G + +A+VTFS QV I VL F + I IRG D SWTY G G+ EGKQA++ASAAEEL FT+ STLL DDD +N++ AL GVRA+ Sbjct: 6 LVKINFLAIDFDLTMIDVHTGGTWKGTPMELASHVRPLFKQLVTEAAVNGGIKIAIVTFSPQVRNIGDVLKVTF-PDFHDSIPIRGRDKSWTYEGGGSREGKQAYMASAAEELGSIFPGEDFTKNSTLLIDDDVNNIKIALKDGVRAI 152
BLAST of jgi.p|Trimin1|168258 vs. uniprot
Match: A0A7S2KRM2_9STRA (Hypothetical protein n=3 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KRM2_9STRA) HSP 1 Score: 135 bits (339), Expect = 2.030e-36 Identity = 74/163 (45.40%), Postives = 98/163 (60.12%), Query Frame = 1 Query: 34 INLLAFDFDQTLVDVHTFGRWQDSEAELAKHVRPFFRELVLAGAEHGMHMAVVTFSAQVSIIRGVLHEAFGEEIASRIVIRGADGSWTYTGRGACEGKQAHIASAAEEL--------TQFTRCSTLLFDDDEHNVRAALDAGVRAVLCDTHDPHAMVRDLIAL 498 IN LA DFDQT++DVHT GRWQ + EL +H+RP F LV A + +A+ TFS Q IR V+ AF IA IVIRG D +W Y G G GKQ H+ASAAEEL T T+ +TLL DDD N+R +L RA+ + +P+ ++ +++ L Sbjct: 77 INFLAIDFDQTMIDVHTGGRWQGTALELTEHLRPVFLHLVPAATNRNIRIAICTFSGQTKHIRDVMEYAF-PNIAELIVIRGNDKTWEYHGNGFKRGKQQHMASAAEELLAEQALGVTDVTKATTLLIDDDPKNIRMSLKDRTRAIWFNPKEPNELLDNILML 238
BLAST of jgi.p|Trimin1|168258 vs. uniprot
Match: B8CB40_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CB40_THAPS) HSP 1 Score: 132 bits (333), Expect = 4.270e-36 Identity = 73/164 (44.51%), Postives = 99/164 (60.37%), Query Frame = 1 Query: 31 QINLLAFDFDQTLVDVHTFGRWQDSEAELAKHVRPFFRELVLAGAEHGMHMAVVTFSAQVSIIRGVLHEAFGEEIASRIVIRGADGSWTYTGRGACEGKQAHIASAAEEL--------TQFTRCSTLLFDDDEHNVRAALDAGVRAVLCDTHDPHAMVRDLIAL 498 +IN LA DFDQTLVDVHT GRW+ + EL +H+RP F LV ++H + +A+VTFS Q IR VL ++ + A I IRG D +W Y G G GKQ H+AS +EEL T + +TLL DDD N+R +L G RAV + DP ++ +++ L Sbjct: 27 KINFLAIDFDQTLVDVHTGGRWKGTTQELVQHMRPLFLRLVPLASQHNIRVAIVTFSRQTERIREVLELSY-PDYADVIPIRGCDNTWEYKGSGMRMGKQEHMASVSEELIAKPAMGVTDVRKDTTLLIDDDPRNIRLSLKDGTRAVWFNPMDPERLLDNILLL 189
BLAST of jgi.p|Trimin1|168258 vs. uniprot
Match: A0A7S3V6R1_9STRA (Hypothetical protein n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V6R1_9STRA) HSP 1 Score: 124 bits (312), Expect = 5.270e-33 Identity = 72/163 (44.17%), Postives = 99/163 (60.74%), Query Frame = 1 Query: 34 INLLAFDFDQTLVDVHTFGRWQDSEAELAKHVRPFFRELVLAGAEHGMHMAVVTFSAQVSIIRGVLHEAFGEEIASRIVIRGADGSWTYTGRGACEGKQAHIASAAEELTQFTRCSTL--------LFDDDEHNVRAALDAGVRAVLCDTHDPHAMVRDLIAL 498 IN LA DFDQT++D+HT GR++ + ELA+HVRP F +L+ + G+++ +VTFS QV I V+ F E A IVIRG D S+ Y G G EGKQ +ASA EE+ T+ + L L DDD N+ AL GVRA++ D +VRD+I++ Sbjct: 24 INFLALDFDQTIIDIHTGGRFKGTTTELARHVRPMFAQLITCAHDAGINIGIVTFSPQVQQIGHVMEIMF-PEFAHEIVIRGRDRSFHYEGNGMKEGKQPFMASAVEEI--MTKNTNLVXXXXXXXLVDDDADNIELALRDGVRAIVLDPDRSQLLVRDIISM 183 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|168258 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_14075 ID=mRNA_14075|Name=jgi.p|Trimin1|168258|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=504bp|location=Sequence derived from alignment at Contig_56:28914..30479+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGTATCGCCTCTGATCGCGTGCCTGCCACAGATCAATCTTCTCGCGTTback to top protein sequence of jgi.p|Trimin1|168258 >Trimin1|168258|e_gw1.56.37.1 ID=Trimin1|168258|e_gw1.56.37.1|Name=jgi.p|Trimin1|168258|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=168bp MVSPLIACLPQINLLAFDFDQTLVDVHTFGRWQDSEAELAKHVRPFFRELback to top mRNA from alignment at Contig_56:28914..30479+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_14075 ID=mRNA_14075|Name=jgi.p|Trimin1|168258|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1566bp|location=Sequence derived from alignment at Contig_56:28914..30479+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_56:28914..30479+ >mRNA_14075 ID=mRNA_14075|Name=jgi.p|Trimin1|168258|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=504bp|location=Sequence derived from alignment at Contig_56:28914..30479+ (Tribonema minus UTEX_B_3156 )back to top |