mRNA_14064 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|176058
Unique NamemRNA_14064
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|176058 vs. uniprot
Match: A0A836CNR6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNR6_9STRA)

HSP 1 Score: 511 bits (1315), Expect = 7.200e-181
Identity = 319/319 (100.00%), Postives = 319/319 (100.00%), Query Frame = 1 
Query:    1 MRSLIRTLQRRIEAEGTLRGHNLVAFSGGVDSSVVAALVHEVFPSNSLACLGVSPSLPAAQRELAHTIADRIGIGLREVVTQEGSDPEYIANRGQSCYHCKSHLYSALEAIAADATAAVHSRNGGDGDSRNVLFNGTNQEDRSDTTRVGLKAAAEYSVSSPIDTLTKAQVRAVARALALPNWDHAASPCLRSRLAFGVAATPASLARVERAEAAARALLALGPRDNLRVRAMAAERALVEVDAARLXXXXXXXXXXXXXXXXXXXXXXDVRAFRSGAVSGHAXXXXXXXXXXXXXXXSVEERVAADGTRVSAVRAARSQ 957
            MRSLIRTLQRRIEAEGTLRGHNLVAFSGGVDSSVVAALVHEVFPSNSLACLGVSPSLPAAQRELAHTIADRIGIGLREVVTQEGSDPEYIANRGQSCYHCKSHLYSALEAIAADATAAVHSRNGGDGDSRNVLFNGTNQEDRSDTTRVGLKAAAEYSVSSPIDTLTKAQVRAVARALALPNWDHAASPCLRSRLAFGVAATPASLARVERAEAAARALLALGPRDNLRVRAMAAERALVEVDAARLXXXXXXXXXXXXXXXXXXXXXXDVRAFRSGAVSGHAXXXXXXXXXXXXXXXSVEERVAADGTRVSAVRAARSQ
Sbjct:    1 MRSLIRTLQRRIEAEGTLRGHNLVAFSGGVDSSVVAALVHEVFPSNSLACLGVSPSLPAAQRELAHTIADRIGIGLREVVTQEGSDPEYIANRGQSCYHCKSHLYSALEAIAADATAAVHSRNGGDGDSRNVLFNGTNQEDRSDTTRVGLKAAAEYSVSSPIDTLTKAQVRAVARALALPNWDHAASPCLRSRLAFGVAATPASLARVERAEAAARALLALGPRDNLRVRAMAAERALVEVDAARLXXXXXXXXXXXXXXXXXXXXXXDVRAFRSGAVSGHAXXXXXXXXXXXXXXXSVEERVAADGTRVSAVRAARSQ 319
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BLAST of jgi.p|Trimin1|176058 vs. uniprot
Match: D7FVK8_ECTSI (Asparagine synthetase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVK8_ECTSI)

HSP 1 Score: 288 bits (736), Expect = 1.570e-92
Identity = 175/309 (56.63%), Postives = 206/309 (66.67%), Query Frame = 1 
Query:    1 MRSLIRTLQRRIEAEGTLR--GHNLVAFSGGVDSSVVAALVHEVFPSNSLACLGVSPSLPAAQRELAHTIADRIGIGLREVVTQEGSDPEYIANRGQSCYHCKSHLYSALEAIAADATAAVHSRNG-----GDGDS---------------------RNVLFNGTNQEDRSDTTRVGLKAAAEYSVSSPIDTLTKAQVRAVARALALPNWDHAASPCLRSRLAFGVAATPASLARVERAEAAARALLALGPRDNLRVRAMAAERALVEVDAAR-LXXXXXXXXXXXXXXXXXXXXXXDVRAFRSGAVSG 840
            M++ IRTL+ R+ + GT    G N+VAFSGGVDSS+VAALVH  FP +S AC+GVS +LPAAQ +LA ++A+RIGI L E+ T EGSDP+YIAN GQSC+HCK+HLYSALEA+A  A   V SR       GDG+                      R VLFNGTN++D+ DTTRVGLKAAA++ V+SPID LTKA+VRAVAR L LPNW+HAASPCLRSRLAFGV ATP  L  VE+AE AAR  L LG   NLRVRAM   +AL+EVDA   L                      DVR FRSGAVSG
Sbjct:    1 MQNTIRTLRARVLSLGTSAADGKNIVAFSGGVDSSLVAALVHHAFPRSSQACVGVSSALPAAQLDLARSVANRIGIPLTEISTTEGSDPDYIANEGQSCFHCKTHLYSALEAVAVQA--GVESRRSSAAAVGDGEPSTSALEGGGADGAGGIVEGGRRVVLFNGTNKDDKRDTTRVGLKAAADFQVASPIDMLTKAEVRAVARELGLPNWNHAASPCLRSRLAFGVQATPEKLVLVEKAEDAARKRLDLGVSHNLRVRAMHGNKALLEVDAGEILEEALRSIEDIRSLILPLGFGEVDVRPFRSGAVSG 307
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BLAST of jgi.p|Trimin1|176058 vs. uniprot
Match: A0A6V1PUF6_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PUF6_HETAK)

HSP 1 Score: 257 bits (656), Expect = 3.190e-81
Identity = 145/280 (51.79%), Postives = 185/280 (66.07%), Query Frame = 1 
Query:    7 SLIRTLQRRIEAEGTLRGHNLVAFSGGVDSSVVAALVHEVFPSNSLACLGVSPSLPAAQRELAHTIADRIGIGLREVVTQEGSDPEYIANRGQSCYHCKSHLYSALEAIAADATAAVHSRNGGDGDSRNVLFNGTNQEDRSDTTRVGLKAAAEYSVSSPIDTLTKAQVRAVARALALPNWDHAASPCLRSRLAFGVAATPASLARVERAEAAARALLALGPRDNLRVRAMAAERALVEVDAARLXXXXXXXXXXXXXXXXXXXXXXDVRAFRSGAVSGHA 846
            ++I  L  R+   GT RG N++AFSGGVDSS+ AALVH+VFP NS AC+G+S +LP  Q  LA  +A  IGI L+EV T EG D +YIAN+G++CYHCK+HLYS+L A+A +  AA  +  G DG  + +LFNGTN++D  D TR+GLKAA  + V+SP+  +TK +VR  A+AL LPNW HAASPCLRSRLAFGVAAT  +L R+++AEA  R  L LGP  NLRVRA    RA V VD + L                        RA+R+G +SG A
Sbjct:    6 AIIDLLLARVSNLGTRRGSNIIAFSGGVDSSLSAALVHKVFPQNSSACIGISAALPQDQLILAREVASSIGIHLQEVRTNEGYDADYIANKGKACYHCKTHLYSSLMAVA-ELAAAKGNIIGTDGKEKVILFNGTNKDDLRDDTRIGLKAAENFKVASPLAEITKDEVRLAAKALGLPNWQHAASPCLRSRLAFGVAATKENLERIDKAEAIVRRHLGLGPEVNLRVRAANPTRAAVAVDQSLLEAVATHFPRIEEKILALGFKNVSFRAYRTGMMSGFA 284
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BLAST of jgi.p|Trimin1|176058 vs. uniprot
Match: A0A485LSD2_9STRA (Aste57867_23475 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LSD2_9STRA)

HSP 1 Score: 239 bits (611), Expect = 1.270e-74
Identity = 131/280 (46.79%), Postives = 186/280 (66.43%), Query Frame = 1 
Query:   10 LIRTLQRRIEAEGTLRGHNLVAFSGGVDSSVVAALVHEVFPSNSLACLGVSPSLPAAQRELAHTIADRIGIGLREVVTQEGSDPEYIANRGQSCYHCKSHLYSALEAIAADATAAVHSRNGGDGDSRNVLFNGTNQEDRSDTTRVGLKAAAEYSVSSPIDTLTKAQVRAVARALALPNWDHAASPCLRSRLAFGVAATPASLARVERAEAAARALLALGPRDNLRVRAMAAERALVEVDAARLXXXXXXXXXXXXXXXXXXXXXX-DVRAFRSGAVSGHA 846
            +++ +  R+   G+++  N+VA+SGGVDSS+VAA+VH VFP NS+ACLGVS +LPA Q  +A  +A  IGI L E  T EG+DP Y+ N+G+SCY+CK++LY+ L  + +     + +      +++ +LFNGTN +D+ D TR+GL AA+E+ V SP++ L K  VR +++ L LPNW++AASPCLRSRLAFGVAAT   LAR+E+AE   R+ LAL   DNLRVR +A  RA +EVD  +L                       DVRAF+SG++SG++
Sbjct:    1 MLQQVLARVRQAGSMQHMNVVAYSGGVDSSLVAAIVHRVFPDNSIACLGVSAALPAEQLLVARGVAQHIGIPLWETPTTEGNDPRYVENKGKSCYYCKTNLYTTLNQVVSHIKTQMPA------EAKPILFNGTNADDKLDPTRLGLVAASEFHVVSPLEALAKTSVRELSKELGLPNWNYAASPCLRSRLAFGVAATRDHLARIEKAEETVRSHLALTRADNLRVRFLAGNRAAIEVDLKKLESLLPTDIHSVQEACEKFGFAAVDVRAFKSGSLSGYS 274
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BLAST of jgi.p|Trimin1|176058 vs. uniprot
Match: A0A6G0W843_9STRA (Asparagine synthetase domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W843_9STRA)

HSP 1 Score: 238 bits (608), Expect = 4.070e-74
Identity = 135/278 (48.56%), Postives = 183/278 (65.83%), Query Frame = 1 
Query:   10 LIRTLQRRIEAEGTLRGHNLVAFSGGVDSSVVAALVHEVFPSNSLACLGVSPSLPAAQRELAHTIADRIGIGLREVVTQEGSDPEYIANRGQSCYHCKSHLYSALEAIAADATAAVHSRNGGDGDSRNVLFNGTNQEDRSDTTRVGLKAAAEYSVSSPIDTLTKAQVRAVARALALPNWDHAASPCLRSRLAFGVAATPASLARVERAEAAARALLALGPRDNLRVRAMAAERALVEVDAARLXXXXXXXXXXXXXXXXXXXXXXD-VRAFRSGAVSG 840
            +++ L  R+   G+    N+VAFSGGVDSS+VAA+VH+ FP NS+ACLGVS ++PA Q +LA  IA  IGI L E  T EG DP Y+ N GQSCY+CK++LY+ L  +A+   + +         +  +L+NGTN +D+ D TR+GL AA E+ V SP++ LTKA+VR  ++ L LPNW++AASPCLRSRLAFGV+AT   L+R+ERAE A R+++AL P DN+RVR +A  RA VE+DA+R                         VR F+SG+VSG
Sbjct:    1 MLQRLLSRVRQTGSTDRLNVVAFSGGVDSSLVAAVVHKTFPENSIACLGVSAAVPADQLDLAREIARYIGIPLWETPTSEGQDPRYVENIGQSCYYCKTNLYTTLNQVASHVKSNIPEG------TVPILYNGTNSDDKLDPTRLGLIAANEFRVVSPLEDLTKAEVRQASKELGLPNWNYAASPCLRSRLAFGVSATKEHLSRIERAERAIRSMMALKPSDNMRVRFLAQNRAAVELDASRQQSLLPEEVQAAQEICKQIGFVDAIVRPFKSGSVSG 272
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BLAST of jgi.p|Trimin1|176058 vs. uniprot
Match: A0A024U4X0_9STRA (NAD_synthase domain-containing protein n=6 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U4X0_9STRA)

HSP 1 Score: 238 bits (607), Expect = 5.070e-74
Identity = 131/241 (54.36%), Postives = 166/241 (68.88%), Query Frame = 1 
Query:   10 LIRTLQRRIEAEGTLRGHNLVAFSGGVDSSVVAALVHEVFPSNSLACLGVSPSLPAAQRELAHTIADRIGIGLREVVTQEGSDPEYIANRGQSCYHCKSHLYSALEAIAADATAAVHSRNGGDGDSRNVLFNGTNQEDRSDTTRVGLKAAAEYSVSSPIDTLTKAQVRAVARALALPNWDHAASPCLRSRLAFGVAATPASLARVERAEAAARALLALGPRDNLRVRAMAAERALVEVDAA 732
            L+  L  R+   G+ +  N+VA+SGGVDSS+VAALVH VFP NS+ACLGVS +L   Q  LA  +A  IGI L E  T EG DP Y+ N+GQSCY+CK++LY+ L  +A    A              VLFNGTN +D+ D TR+GL AA E+ V SP++ LTKA VR +++ + LPNW++AASPCLRSRLAFGVAA P  LAR+E+AE A R+ +AL P DNLRVR +A  RA VE+DAA
Sbjct:    2 LLENLLARVRHAGSSKHVNVVAYSGGVDSSLVAALVHRVFPENSIACLGVSAALSQDQLTLARDVATAIGIPLWETRTSEGEDPRYVENKGQSCYYCKTNLYTTLSQVAERVKAQSPGV-------APVLFNGTNADDKFDPTRLGLVAATEFQVVSPLENLTKASVRQISKQIGLPNWNYAASPCLRSRLAFGVAANPDHLARIEKAEHAVRSTVALTPVDNLRVRFLAHNRAAVELDAA 235
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BLAST of jgi.p|Trimin1|176058 vs. uniprot
Match: A0A067C1Q5_SAPPC (NAD_synthase domain-containing protein (Fragment) n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C1Q5_SAPPC)

HSP 1 Score: 238 bits (608), Expect = 7.140e-74
Identity = 144/274 (52.55%), Postives = 177/274 (64.60%), Query Frame = 1 
Query:   28 RRIEAEGTLRGHNLVAFSGGVDSSVVAALVHEVFPSNSLACLGVSPSLPAAQRELAHTIADRIGIGLREVVTQEGSDPEYIANRGQSCYHCKSHLYSALEAIAADATAAVHSRNGGDGDSRNVLFNGTNQEDRSDTTRVGLKAAAEYSVSSPIDTLTKAQVRAVARALALPNWDHAASPCLRSRLAFGVAATPASLARVERAEAAARALLALGPRDNLRVRAMAAERALVEVDAAR-LXXXXXXXXXXXXXXXXXXXXXXDVRAFRSGAVSGHA 846
            R + A G+ +  N+VAFSGGVDSSVVAALVHE FP+NS+ACLGVS +LP+ Q  LA  +A  IGI L E  T EG+DP YI N+GQSCY+CK++LY+ L  +A      VH+ + G G  R  LFNGTN +D+ D TR+GL AA+E+ V SP+  LTK+ VRA+A    L NW+ AASPCLRSRLAFGV AT   L RV  AEA  R+ L L P +NLRVR +    A +E+DAAR L                       VRAFRSG+VSG A
Sbjct:    7 RHVTALGSPKTLNVVAFSGGVDSSVVAALVHEAFPTNSVACLGVSAALPSEQLALARKVATDIGIPLWETPTTEGADPLYIENKGQSCYYCKTNLYTTLNDVATH----VHTTHRGSGRPR--LFNGTNADDKLDPTRLGLVAASEFQVVSPLQDLTKSDVRALANERGLLNWNFAASPCLRSRLAFGVTATADHLQRVAAAEAFVRSFLRLAPHENLRVRFLPQNHAAIELDAARHLALSVTETAILAAKCVELGFTKTHVRAFRSGSVSGFA 274
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BLAST of jgi.p|Trimin1|176058 vs. uniprot
Match: A0A4D9D8U2_9STRA (Asparagine synthetase domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D8U2_9STRA)

HSP 1 Score: 240 bits (613), Expect = 9.480e-74
Identity = 149/308 (48.38%), Postives = 187/308 (60.71%), Query Frame = 1 
Query:   31 RIEAEGTLRGHNLVAFSGGVDSSVVAALVHEVFPSNSLACLGVSPSLPAAQRELAHTIADRIGIGLREVVTQEGSDPEYIANRGQSCYHCKSHLYSALEAIAAD---------ATAAVHSRNGG-------------DGDSRNV--LFNGTNQEDRSDTTRVGLKAAAEYSVSSPIDTLTKAQVRAVARALALPNWDHAASPCLRSRLAFGVAATPASLARVERAEAAARALLA--------------LGPRDNLRVRAMAAERALVEVDAARLXXXXXXXXXXXXXXXXXXXXXX-DVRAFRSGAVS 837
            R+  EGT  G NL+A+SGGVDSS+VAALV +VFPSNS+AC+G+S SLP  Q  LA  +A  IGI LRE+ T EG+ PEY+ANRG SC+HCK+HLY+AL+A+AA          ++  +HS  GG             D  + +V  LFNGTN +DR D TRVGLKAA ++ V SPID LTK +VR +A+A+ LPNW HAASPCLRSRLAFGV A  A L RVE AE   +A L               LG   N+RVR MA  +A++E+D   L                        +RAF+SG+VS
Sbjct:   26 RVRLEGTSTGTNLIAYSGGVDSSLVAALVRQVFPSNSVACIGLSASLPDNQLTLARQVAAHIGIPLREIPTYEGAAPEYVANRGMSCFHCKTHLYTALQAVAAVVGTHMNGPLSSNFLHSTQGGSTETLQHVKMNGADASAPSVVALFNGTNADDRRDPTRVGLKAATKFKVRSPIDHLTKEEVRLLAKAMNLPNWQHAASPCLRSRLAFGVPALEAHLRRVETAERIVKATLGGKFDDKEGEGGLSKLGVHHNVRVRLMARGKAMIELDVELLESAASYLSTFEGRFKKELGFTEVSLRAFKSGSVS 333
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BLAST of jgi.p|Trimin1|176058 vs. uniprot
Match: A0A7S2W2V8_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W2V8_9STRA)

HSP 1 Score: 238 bits (606), Expect = 1.890e-73
Identity = 132/249 (53.01%), Postives = 175/249 (70.28%), Query Frame = 1 
Query:    1 MRSLIRTLQRRIEAEGTLR-GHNLVAFSGGVDSSVVAALVHEVFPSNSLACLGVSPSLPAAQRELAHTIADRIGIGLREVVTQEGSDPEYIANRGQSCYHCKSHLYSALEAIAADATAAVHSRNGGDGDSRN--VLFNGTNQEDRSDTTRVGLKAAAEYSVSSPIDTLTKAQVRAVARALALPNWDHAASPCLRSRLAFGVAATPASLARVERAEAAARALLALGPRDNLRVRAMAAERALVEVDAARL 738
            M +L+ +  R+I+A    + G N+VAFSGGVDSS+VAALVH V P++SLAC G+S SLP AQ +LA  +A+ IGI +REV T EGS PEY+AN G +CYHCKS LY+AL A+A  A+        G G      VL+NGTN +D+ D TRVGL+AA  + V+SP+  L+K +VR  A+ L LPNW+HAASPCLRSRLA GV+AT  +L R+E AE   R+++      NLRVR +A ++A+VEVD+ +L
Sbjct:    1 MTALVESCLRKIQAIAVAQPGKNIVAFSGGVDSSLVAALVHRVAPASSLACTGISASLPEAQLDLARHVAEHIGIQMREVPTSEGSHPEYLANEGMACYHCKSELYTALGAVARFASGV------GTGGPATPVVLYNGTNADDQRDPTRVGLRAAEHFQVASPVSHLSKDEVRQAAKHLGLPNWNHAASPCLRSRLALGVSATDETLRRIESAERFVRSIVPFDVHHNLRVRLLAKQKAVVEVDSEKL 243
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BLAST of jgi.p|Trimin1|176058 vs. uniprot
Match: W4FIA1_9STRA (NAD_synthase domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FIA1_9STRA)

HSP 1 Score: 231 bits (588), Expect = 1.150e-71
Identity = 127/232 (54.74%), Postives = 163/232 (70.26%), Query Frame = 1 
Query:   22 LQRRIEAEGTLRGHNLVAFSGGVDSSVVAALVHEVFPSNSLACLGVSPSLPAAQRELAHTIADRIGIGLREVVTQEGSDPEYIANRGQSCYHCKSHLYSALEAIAADATAAVHSRNGGDGDSRNVLFNGTNQEDRSDTTRVGLKAAAEYSVSSPIDTLTKAQVRAVARALALPNWDHAASPCLRSRLAFGVAATPASLARVERAEAAARALLALGPRDNLRVRAMAAERALV 717
            L  R+   G+ +  N+VA+SGGVDSS+VAALVH VFP NS+ACLGVS +LP  Q  LA  +A  IGI L E  T EG+DP Y+ N+GQSCY+CK++LY+ L  +AA   A   S + G      V+FNGTN +D+ D TR+GL AA E+ V SP++ L+KA VR +++ L LPNW++AASPCLRSRLAFGV+A P  LAR+E+AE   R+ LAL   DNLRVR +A  RA V
Sbjct:    5 LLARVRQAGSSKHVNIVAYSGGVDSSLVAALVHRVFPENSIACLGVSAALPQDQLLLARNVASAIGIPLWEARTSEGNDPRYVENKGQSCYYCKTNLYTTLNQVAAHVKAQGCSSSPG---VIPVMFNGTNADDKLDPTRLGLVAATEFQVVSPLEHLSKASVRQISKDLGLPNWNYAASPCLRSRLAFGVSANPDHLARIEKAEGEVRSSLALARTDNLRVRFLANNRAAV 233
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|176058 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CNR6_9STRA7.200e-181100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FVK8_ECTSI1.570e-9256.63Asparagine synthetase domain-containing protein n=... [more]
A0A6V1PUF6_HETAK3.190e-8151.79Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A485LSD2_9STRA1.270e-7446.79Aste57867_23475 protein n=1 Tax=Aphanomyces stella... [more]
A0A6G0W843_9STRA4.070e-7448.56Asparagine synthetase domain-containing protein n=... [more]
A0A024U4X0_9STRA5.070e-7454.36NAD_synthase domain-containing protein n=6 Tax=Aph... [more]
A0A067C1Q5_SAPPC7.140e-7452.55NAD_synthase domain-containing protein (Fragment) ... [more]
A0A4D9D8U2_9STRA9.480e-7448.38Asparagine synthetase domain-containing protein n=... [more]
A0A7S2W2V8_9STRA1.890e-7353.01Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
W4FIA1_9STRA1.150e-7154.74NAD_synthase domain-containing protein n=1 Tax=Aph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_133contigContig_133:370002..371236 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|176058|e_gw1.133.74.1
DescriptiontRNA processing
COG categoryL
Max annot lvl2759|Eukaryota
EggNOG OGsCOG1606@1|root,2RYIH@2759|Eukaryota
Evalue2.57e-93
Seed ortholog2880.D7FVK8
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRossmann-like alpha/beta/alpha sandwich fold
Ec32 orthologEc-15_003670.1
TranscriptId176380
TrackFilteredModels1
ProteinId176058
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|176058gene_14064Tribonema minus UTEX_B_3156 geneContig_133 370002..371236 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14064_1exon_14064_1Tribonema minus UTEX_B_3156 exonContig_133 370002..370465 +
exon_14064_2exon_14064_2Tribonema minus UTEX_B_3156 exonContig_133 370741..371236 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14064CDS_14064Tribonema minus UTEX_B_3156 CDSContig_133 370002..370465 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|176058Trimin1|176058|e_gw1.133.74.1Tribonema minus UTEX_B_3156 polypeptideContig_133 370002..371236 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14064 ID=mRNA_14064|Name=jgi.p|Trimin1|176058|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=960bp|location=Sequence derived from alignment at Contig_133:370002..371236+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCGGAGCTTAATACGAACATTGCAACGGCGGATCGAGGCAGAGGGCAC
CTTGCGAGGGCACAACCTTGTGGCTTTCAGCGGAGGGGTCGACTCCAGCG
TCGTCGCTGCACTGGTGCATGAAGTATTTCCCAGCAACAGCCTGGCGTGC
CTGGGAGTGTCGCCCAGTCTACCAGCAGCACAGCGAGAACTTGCTCACAC
GATAGCAGACAGGATCGGCATCGGCCTCCGGGAAGTGGTCACGCAGGAGG
GCAGCGATCCAGAATACATTGCGAACAGGGGGCAGTCCTGCTACCACTGC
AAATCCCACCTCTACTCCGCCTTGGAAGCCATAGCGGCTGACGCCACTGC
GGCAGTGCATAGCAGAAATGGAGGCGACGGTGACAGTAGGAACGTCCTCT
TCAACGGCACTAACCAGGAGGACCGGAGTGACACGACCAGGGTGGGACTG
AAAGCAGCAGCAGAGTACTCCGTGAGCAGCCCCATAGACACGCTCACCAA
GGCGCAGGTGCGCGCCGTCGCGCGCGCGCTCGCGCTGCCCAACTGGGACC
ACGCCGCGTCGCCGTGCCTGCGCTCGCGCCTCGCGTTCGGCGTCGCGGCG
ACGCCGGCGTCGCTCGCGCGCGTCGAGCGCGCGGAGGCCGCCGCGCGCGC
CCTCCTCGCGCTGGGCCCGCGCGACAACCTGCGCGTGCGCGCCATGGCGG
CGGAGCGCGCGCTGGTGGAGGTGGACGCGGCGCGCCTCGACGCCGCGCGC
GCGCGTGCCGCCGTGCTGAGCGCCGCCATCCTGCCGCTGGGCTTCGCCGC
GCTCGACGTGCGCGCGTTCCGCAGCGGCGCCGTCAGCGGCCATGCTGATG
CCGCGGCGGCGGTGGCGGCGACGGCGGCGAGCGCGGAGGCGTCCGTGGAG
GAGCGGGTCGCAGCGGATGGGACGCGCGTGTCGGCAGTGAGGGCGGCCAG
ATCGCAGTAA
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protein sequence of jgi.p|Trimin1|176058

>Trimin1|176058|e_gw1.133.74.1 ID=Trimin1|176058|e_gw1.133.74.1|Name=jgi.p|Trimin1|176058|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=320bp
MRSLIRTLQRRIEAEGTLRGHNLVAFSGGVDSSVVAALVHEVFPSNSLAC
LGVSPSLPAAQRELAHTIADRIGIGLREVVTQEGSDPEYIANRGQSCYHC
KSHLYSALEAIAADATAAVHSRNGGDGDSRNVLFNGTNQEDRSDTTRVGL
KAAAEYSVSSPIDTLTKAQVRAVARALALPNWDHAASPCLRSRLAFGVAA
TPASLARVERAEAAARALLALGPRDNLRVRAMAAERALVEVDAARLDAAR
ARAAVLSAAILPLGFAALDVRAFRSGAVSGHADAAAAVAATAASAEASVE
ERVAADGTRVSAVRAARSQ*
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mRNA from alignment at Contig_133:370002..371236+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14064 ID=mRNA_14064|Name=jgi.p|Trimin1|176058|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1235bp|location=Sequence derived from alignment at Contig_133:370002..371236+ (Tribonema minus UTEX_B_3156 )
ATGCGGAGCTTAATACGAACATTGCAACGGCGGATCGAGGCAGAGGGCAC
CTTGCGAGGGCACAACCTTGTGGCTTTCAGCGGAGGGGTCGACTCCAGCG
TCGTCGCTGCACTGGTGCATGAAGTATTTCCCAGCAACAGCCTGGCGTGC
CTGGGAGTGTCGCCCAGTCTACCAGCAGCACAGCGAGAACTTGCTCACAC
GATAGCAGACAGGATCGGCATCGGCCTCCGGGAAGTGGTCACGCAGGAGG
GCAGCGATCCAGAATACATTGCGAACAGGGGGCAGTCCTGCTACCACTGC
AAATCCCACCTCTACTCCGCCTTGGAAGCCATAGCGGCTGACGCCACTGC
GGCAGTGCATAGCAGAAATGGAGGCGACGGTGACAGTAGGAACGTCCTCT
TCAACGGCACTAACCAGGAGGACCGGAGTGACACGACCAGGGTGGGACTG
AAAGCAGCAGCAGAGTGAGTGGTGTTCGGTCCTGTACGGTTGCCGTCCAC
GCCCTGCACCATGCTTGAGCGGTGTTCTGGTCCTGTACGGTTGCCGTCCA
CGCCCTGCACCATGCTCACAGAACCGCAGCTGCAACTCATATGCCACGAA
AGAGAGAGCATGCGCCGCCCCCACTGCTCGAGATGCCTCATGTAACAACT
TCGCCTTTGCTGTGATGCGCTGGCGCGTGCATGCCCACTCCTATGCATTC
CCCACACAAGCCCCTGAACCCCGTCCTTGCCCCGCGCAGGTACTCCGTGA
GCAGCCCCATAGACACGCTCACCAAGGCGCAGGTGCGCGCCGTCGCGCGC
GCGCTCGCGCTGCCCAACTGGGACCACGCCGCGTCGCCGTGCCTGCGCTC
GCGCCTCGCGTTCGGCGTCGCGGCGACGCCGGCGTCGCTCGCGCGCGTCG
AGCGCGCGGAGGCCGCCGCGCGCGCCCTCCTCGCGCTGGGCCCGCGCGAC
AACCTGCGCGTGCGCGCCATGGCGGCGGAGCGCGCGCTGGTGGAGGTGGA
CGCGGCGCGCCTCGACGCCGCGCGCGCGCGTGCCGCCGTGCTGAGCGCCG
CCATCCTGCCGCTGGGCTTCGCCGCGCTCGACGTGCGCGCGTTCCGCAGC
GGCGCCGTCAGCGGCCATGCTGATGCCGCGGCGGCGGTGGCGGCGACGGC
GGCGAGCGCGGAGGCGTCCGTGGAGGAGCGGGTCGCAGCGGATGGGACGC
GCGTGTCGGCAGTGAGGGCGGCCAGATCGCAGTAA
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Coding sequence (CDS) from alignment at Contig_133:370002..371236+

>mRNA_14064 ID=mRNA_14064|Name=jgi.p|Trimin1|176058|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=960bp|location=Sequence derived from alignment at Contig_133:370002..371236+ (Tribonema minus UTEX_B_3156 )
ATGCGGAGCTTAATACGAACATTGCAACGGCGGATCGAGGCAGAGGGCAC
CTTGCGAGGGCACAACCTTGTGGCTTTCAGCGGAGGGGTCGACTCCAGCG
TCGTCGCTGCACTGGTGCATGAAGTATTTCCCAGCAACAGCCTGGCGTGC
CTGGGAGTGTCGCCCAGTCTACCAGCAGCACAGCGAGAACTTGCTCACAC
GATAGCAGACAGGATCGGCATCGGCCTCCGGGAAGTGGTCACGCAGGAGG
GCAGCGATCCAGAATACATTGCGAACAGGGGGCAGTCCTGCTACCACTGC
AAATCCCACCTCTACTCCGCCTTGGAAGCCATAGCGGCTGACGCCACTGC
GGCAGTGCATAGCAGAAATGGAGGCGACGGTGACAGTAGGAACGTCCTCT
TCAACGGCACTAACCAGGAGGACCGGAGTGACACGACCAGGGTGGGACTG
AAAGCAGCAGCAGAGTACTCCGTGAGCAGCCCCATAGACACGCTCACCAA
GGCGCAGGTGCGCGCCGTCGCGCGCGCGCTCGCGCTGCCCAACTGGGACC
ACGCCGCGTCGCCGTGCCTGCGCTCGCGCCTCGCGTTCGGCGTCGCGGCG
ACGCCGGCGTCGCTCGCGCGCGTCGAGCGCGCGGAGGCCGCCGCGCGCGC
CCTCCTCGCGCTGGGCCCGCGCGACAACCTGCGCGTGCGCGCCATGGCGG
CGGAGCGCGCGCTGGTGGAGGTGGACGCGGCGCGCCTCGACGCCGCGCGC
GCGCGTGCCGCCGTGCTGAGCGCCGCCATCCTGCCGCTGGGCTTCGCCGC
GCTCGACGTGCGCGCGTTCCGCAGCGGCGCCGTCAGCGGCCATGCTGATG
CCGCGGCGGCGGTGGCGGCGACGGCGGCGAGCGCGGAGGCGTCCGTGGAG
GAGCGGGTCGCAGCGGATGGGACGCGCGTGTCGGCAGTGAGGGCGGCCAG
ATCGCAGTAA
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