mRNA_14061 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|352841
Unique NamemRNA_14061
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|352841 vs. uniprot
Match: A0A836CLX3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLX3_9STRA)

HSP 1 Score: 387 bits (994), Expect = 3.690e-136
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 1 
Query:    1 MAVPNPRASYPEEAIVSVPDGLEARWLTTLWETDEEIKKLIEEAKQTKFVKGIADGTLDPQAFAIYTLQDASYLASALPIGSAIKLGRAVTDYISFKTSVLAHFKDKPYYYALANYACFRLWPDMSSYLQKELGDSWEKSVSQGWIRENAPSAPPELGPPEHLADLIEACKITDAGEFDEETATGIVSCSHF 576
            MAVPNPRASYPEEAIVSVPDGLEARWLTTLWETDEEIKKLIEEAKQTKFVKGIADGTLDPQAFAIYTLQDASYLASALPIGSAIKLGRAVTDYISFKTSVLAHFKDKPYYYALANYACFRLWPDMSSYLQKELGDSWEKSVSQGWIRENAPSAPPELGPPEHLADLIEACKITDAGEFDEETATGIVSCSHF
Sbjct:    1 MAVPNPRASYPEEAIVSVPDGLEARWLTTLWETDEEIKKLIEEAKQTKFVKGIADGTLDPQAFAIYTLQDASYLASALPIGSAIKLGRAVTDYISFKTSVLAHFKDKPYYYALANYACFRLWPDMSSYLQKELGDSWEKSVSQGWIRENAPSAPPELGPPEHLADLIEACKITDAGEFDEETATGIVSCSHF 192
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BLAST of jgi.p|Trimin1|352841 vs. uniprot
Match: A0A835XKE3_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XKE3_9CHLO)

HSP 1 Score: 103 bits (256), Expect = 1.330e-23
Identity = 68/195 (34.87%), Postives = 103/195 (52.82%), Query Frame = 1 
Query:    1 MAVPNPRASYPEEAIVSV-PDGLEARWLTTLWETDEEIKKLIEEAKQTKFVKGIADGTLDPQAFAIYTLQDASYLASALPIGSAI----------------------------------------KLGRAVTDYISFKTSVLAHFKDKPYYYALANYACFRLWPDMSSYLQKEL----GDSWEKSVSQGWIRENA 450
            +A  +PRA +P+ A   V P      +   LW++ E  ++L + AK++ F+KGIA+ TLDP+ + +Y LQDA+YL+SA     AI                                        +L  A  DYI F+ S++   KDKP+Y+ LANY C+RLWP+MS+YL+  L    GD ++KS+ +GWI +N+
Sbjct:    8 LAAASPRAHWPDGAAEPVQPKAGTKLFAEELWDSAEAQEQL-KLAKESAFIKGIAENTLDPRLYGVYQLQDAAYLSSAQECFQAITTNPGNSKDLQDYYALKAISYQGYSRDMKHLWHINSLETVRLSPAAYDYIRFEGSMVTSLKDKPWYFLLANYPCYRLWPEMSAYLKTTLNATLGD-YQKSIYKGWIDDNS 200
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BLAST of jgi.p|Trimin1|352841 vs. uniprot
Match: D8TNA3_VOLCA (TENA_THI-4 domain-containing protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TNA3_VOLCA)

HSP 1 Score: 69.3 bits (168), Expect = 6.160e-11
Identity = 42/101 (41.58%), Postives = 59/101 (58.42%), Query Frame = 1 
Query:  247 AIKLGRAVTDYISFKTSVLAHFKDKPYYYALANYACFRLWPDMSSYLQKELGDSWEKSVSQGWIRENAPSAPPELGPPEHLADLIEACKITDAGEFDEETA 549
            AI+L  A  DYI+F+ SV+ +  DKP Y+ALANY C+RLWP+M  YL +EL  +   +V Q WI  N      +    E LA+L+E+       +F+ E A
Sbjct:  128 AIRLSPAARDYIAFEKSVVTNDADKPIYFALANYPCYRLWPEMCEYLIQELAGT--PTVYQTWIDYNK-----DFRSAEKLANLLES----QCSDFEWERA 217
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352841 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A836CLX3_9STRA3.690e-136100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835XKE3_9CHLO1.330e-2334.87Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
D8TNA3_VOLCA6.160e-1141.58TENA_THI-4 domain-containing protein n=1 Tax=Volvo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_133contigContig_133:361213..362649 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|352841|estExt_Genemark1.C_Ctg_1330052
DescriptionTENA/THI-4/PQQC family
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGs2C525@1|root,2S7DC@2759|Eukaryota
Evalue3.36e-19
Seed ortholog3067.XP_002947967.1
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_003130.1
TranscriptId353163
TrackFilteredModels1
ProteinId352841
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352841gene_14061Tribonema minus UTEX_B_3156 geneContig_133 361213..362649 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352841Trimin1|352841|estExt_Genemark1.C_Ctg_1330052Tribonema minus UTEX_B_3156 polypeptideContig_133 361213..362649 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14061_3exon_14061_3Tribonema minus UTEX_B_3156 exonContig_133 361213..361228 -
exon_14061_2exon_14061_2Tribonema minus UTEX_B_3156 exonContig_133 361709..362037 -
exon_14061_1exon_14061_1Tribonema minus UTEX_B_3156 exonContig_133 362416..362649 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14061CDS_14061Tribonema minus UTEX_B_3156 CDSContig_133 362416..362649 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14061 ID=mRNA_14061|Name=jgi.p|Trimin1|352841|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=579bp|location=Sequence derived from alignment at Contig_133:361213..362649- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGTGCCCAATCCGCGCGCTTCATACCCAGAAGAAGCCATCGTTTC
TGTCCCAGATGGCCTTGAAGCAAGGTGGTTGACAACGCTCTGGGAGACAG
ACGAGGAAATCAAGAAGCTGATAGAGGAGGCCAAACAGACCAAGTTCGTC
AAAGGCATTGCGGACGGGACCCTGGACCCGCAAGCATTCGCGATCTACAC
CCTGCAAGATGCCAGCTACCTAGCCAGCGCACTGCCCATCGGCAGCGCGA
TCAAGCTGGGTCGCGCCGTGACGGACTACATCAGCTTCAAGACCTCCGTC
CTAGCGCACTTCAAGGACAAGCCGTACTACTACGCGCTTGCAAACTATGC
GTGCTTCAGACTGTGGCCCGACATGAGTAGCTACCTGCAAAAGGAGCTCG
GAGACTCCTGGGAGAAAAGTGTGTCTCAGGGCTGGATCCGTGAAAACGCA
CCGTCTGCGCCGCCCGAGCTGGGCCCGCCTGAACATCTGGCCGATCTCAT
AGAGGCATGCAAGATCACTGATGCTGGCGAATTTGATGAGGAAACTGCCA
CAGGCATCGTCAGCTGCAGCCACTTTTAA
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protein sequence of jgi.p|Trimin1|352841

>Trimin1|352841|estExt_Genemark1.C_Ctg_1330052 ID=Trimin1|352841|estExt_Genemark1.C_Ctg_1330052|Name=jgi.p|Trimin1|352841|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=193bp
MAVPNPRASYPEEAIVSVPDGLEARWLTTLWETDEEIKKLIEEAKQTKFV
KGIADGTLDPQAFAIYTLQDASYLASALPIGSAIKLGRAVTDYISFKTSV
LAHFKDKPYYYALANYACFRLWPDMSSYLQKELGDSWEKSVSQGWIRENA
PSAPPELGPPEHLADLIEACKITDAGEFDEETATGIVSCSHF*
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mRNA from alignment at Contig_133:361213..362649-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14061 ID=mRNA_14061|Name=jgi.p|Trimin1|352841|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1437bp|location=Sequence derived from alignment at Contig_133:361213..362649- (Tribonema minus UTEX_B_3156 )
ATGGCTGTGCCCAATCCGCGCGCTTCATACCCAGAAGAAGCCATCGTTTC
TGTCCCAGATGGCCTTGAAGCAAGGTGGTTGACAACGCTCTGGGAGACAG
ACGAGGAAATCAAGAAGCTGATAGAGGAGGCCAAACAGACCAAGTTCGTC
AAAGGCATTGCGGACGGGACCCTGGACCCGCAAGCATTCGCGATCTACAC
CCTGCAAGATGCCAGCTACCTAGCCAGCGCACTGGTGAGAGAAGGCATAT
GGGTTTCTTGTCGGCAAGCCTTGTAGCAAGCAGATCATCTGCTCAGGTTC
TGCTGCTTGAAATTTTCTGTCCTCGAGCATCATAATGTGGCCGGCGCGCA
ATCACGGAGCTTTCAGGAAGGCTTCATGAACTTCAAGAAGGTTGAGCAGA
ATTTTTTTGAAAGAGCCCTAGGCGCGCTGTTGCTCATACGCGCGGCTCCA
CCTCCCGCTCTCTCCGTTCGCTTATTTTGCAGGAAAACTTTGCTCATGTT
CAGCACCACCCCTGAACAAGAACTACCCGAAACTCGAGACATACTACGCC
AACAAGATGGACAGCTACTACACTTACCGTGAGAGCATGTGCATCTCCTG
CACATCTACCAGCCCATCGGCAGCGCGATCAAGCTGGGTCGCGCCGTGAC
GGACTACATCAGCTTCAAGACCTCCGTCCTAGCGCACTTCAAGGACAAGC
CGTACTACTACGCGCTTGCAAACTATGCGTGCTTCAGACTGTGGCCCGAC
ATGAGTAGCTACCTGCAAAAGGAGCTCGGAGACTCCTGGGAGAAAAGTGT
GTCTCAGGGCTGGATCCGTGAAAACGCACCGTCTGCGCCGCCCGAGCTGG
GCCCGCCTGAACATCTGGCCGATCTCATAGAGGCATGCAAGATCACTGAT
GCTGGCGAATTTGATGAGGAAACTGCCACAGGCATCGTCAGGTCAGCACT
GAAGTTTGAAGTAGCCTTTTTCAATGCCGCAGTTGTCGTTGCCATTGACC
CAAAAAAAAACCACGCTGGGACCTGCTAGTACCCGCCCGCGTTGACTAGG
CGGTCCAAAGGTGATGGCCACAGAAACCTGGTCCAGAGGTTACTAGTAGG
CTTGGCAAACACTCACTCCTGTCTTGCAGTGGCCTGTTCAACTGAAGTCT
TTCAGGAGACCGTGACGGCGTCCACAGATCAAAAGTGAACCAATGGCATG
GTGCAGTCAGGGCTTCCGAAGTCTGTCAAGGCCCCTGGGCCAGCAGTAAC
TATTAGGTAGTTGACATGCGTCTCGAGTGTCGAAGTGAGCGCAGGTGTGG
ATTGGAACGAAAGCAACGCATGCATGGGCCTCAGCGCAAGGCTGTAGTAC
AGAGGGGAGGGGGAGCATTATTAGCGTCGATTCATGATGATCGTGTTGTC
CCAGCAGTGCTGCTGCAGCAGCTGCAGCCACTTTTAA
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Coding sequence (CDS) from alignment at Contig_133:361213..362649-

>mRNA_14061 ID=mRNA_14061|Name=jgi.p|Trimin1|352841|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=579bp|location=Sequence derived from alignment at Contig_133:361213..362649- (Tribonema minus UTEX_B_3156 )
ATGGCTGTGCCCAATCCGCGCGCTTCATACCCAGAAGAAGCCATCGTTTC
TGTCCCAGATGGCCTTGAAGCAAGGTGGTTGACAACGCTCTGGGAGACAG
ACGAGGAAATCAAGAAGCTGATAGAGGAGGCCAAACAGACCAAGTTCGTC
AAAGGCATTGCGGACGGGACCCTGGACCCGCAAGCATTCGCGATCTACAC
CCTGCAAGATGCCAGCTACCTAGCCAGCGCACTGCCCATCGGCAGCGCGA
TCAAGCTGGGTCGCGCCGTGACGGACTACATCAGCTTCAAGACCTCCGTC
CTAGCGCACTTCAAGGACAAGCCGTACTACTACGCGCTTGCAAACTATGC
GTGCTTCAGACTGTGGCCCGACATGAGTAGCTACCTGCAAAAGGAGCTCG
GAGACTCCTGGGAGAAAAGTGTGTCTCAGGGCTGGATCCGTGAAAACGCA
CCGTCTGCGCCGCCCGAGCTGGGCCCGCCTGAACATCTGGCCGATCTCAT
AGAGGCATGCAAGATCACTGATGCTGGCGAATTTGATGAGGAAACTGCCA
CAGGCATCGTCAGCTGCAGCCACTTTTAA
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