mRNA_14039 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|352824
Unique NamemRNA_14039
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|352824 vs. uniprot
Match: A0A835ZBM5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBM5_9STRA)

HSP 1 Score: 397 bits (1021), Expect = 3.690e-138
Identity = 252/252 (100.00%), Postives = 252/252 (100.00%), Query Frame = 3 
Query:   27 MVSTRTATGVKPAVVLPPLVKKPRTKKAASAAPKATTKKAEKVEETKAPEPAPVXXXXXXXXXEAKAAPAKKEAPKKAAKXXXXXXXXXXXXXXXXXXXXXXXXXDFDVVIEACKQCQAFKCDDRPRDAHRGTPLCTITDAWLQPPRSVQLLRKRAEHVQAAVKEARPDMKVAINPEKPRKGYFEIRVGATTVLSLPSMNRPFPPLKALDMDDVSKKVVAALPAGGAASLASMRGKCLTDQRSYQRESAGGA 782
            MVSTRTATGVKPAVVLPPLVKKPRTKKAASAAPKATTKKAEKVEETKAPEPAPVXXXXXXXXXEAKAAPAKKEAPKKAAKXXXXXXXXXXXXXXXXXXXXXXXXXDFDVVIEACKQCQAFKCDDRPRDAHRGTPLCTITDAWLQPPRSVQLLRKRAEHVQAAVKEARPDMKVAINPEKPRKGYFEIRVGATTVLSLPSMNRPFPPLKALDMDDVSKKVVAALPAGGAASLASMRGKCLTDQRSYQRESAGGA
Sbjct:    1 MVSTRTATGVKPAVVLPPLVKKPRTKKAASAAPKATTKKAEKVEETKAPEPAPVXXXXXXXXXEAKAAPAKKEAPKKAAKXXXXXXXXXXXXXXXXXXXXXXXXXDFDVVIEACKQCQAFKCDDRPRDAHRGTPLCTITDAWLQPPRSVQLLRKRAEHVQAAVKEARPDMKVAINPEKPRKGYFEIRVGATTVLSLPSMNRPFPPLKALDMDDVSKKVVAALPAGGAASLASMRGKCLTDQRSYQRESAGGA 252
[Close]
BLAST of jgi.p|Trimin1|352824 vs. uniprot
Match: A0A835QTH1_VANPL (Uncharacterized protein n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835QTH1_VANPL)

HSP 1 Score: 77.4 bits (189), Expect = 9.340e-14
Identity = 46/112 (41.07%), Postives = 64/112 (57.14%), Query Frame = 3 
Query:  351 VVIEACKQCQAFKCDDRPRDAHRGTPLCTITDAWLQPPRSVQLLRKRAEHVQAAVKEARPDMKVAINPEKPRKGYFEIRVGATTV-LSLPSMNRPFPPLKALDMDDVSKKVV 683
            +V+EAC QC++FK                                +RA  ++ A++EA PD+ V INP+KPR+GYFEIR   T V LSLPSM RPF P+K LDM+++ +K+V
Sbjct:   99 IVVEACTQCKSFK--------------------------------ERALMIKEAMEEAVPDISVEINPQKPRRGYFEIREEKTEVILSLPSMTRPFKPMKQLDMEELIQKLV 178
[Close]
BLAST of jgi.p|Trimin1|352824 vs. uniprot
Match: A0A835PC84_VANPL (Uncharacterized protein n=2 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835PC84_VANPL)

HSP 1 Score: 77.4 bits (189), Expect = 1.400e-13
Identity = 46/112 (41.07%), Postives = 64/112 (57.14%), Query Frame = 3 
Query:  351 VVIEACKQCQAFKCDDRPRDAHRGTPLCTITDAWLQPPRSVQLLRKRAEHVQAAVKEARPDMKVAINPEKPRKGYFEIRVGATTV-LSLPSMNRPFPPLKALDMDDVSKKVV 683
            +V+EAC QC++FK                                +RA  ++ A++EA PD+ V INP+KPR+GYFEIR   T V LSLPSM RPF P+K LDM+++ +K+V
Sbjct:  119 IVVEACTQCKSFK--------------------------------ERALMIKEAMEEAVPDISVEINPQKPRRGYFEIREEKTEVILSLPSMTRPFKPMKQLDMEELIQKLV 198
[Close]
BLAST of jgi.p|Trimin1|352824 vs. uniprot
Match: A0A836XQK0_9ROSI (Selenoprotein n=2 Tax=Salix TaxID=40685 RepID=A0A836XQK0_9ROSI)

HSP 1 Score: 72.4 bits (176), Expect = 9.250e-12
Identity = 47/112 (41.96%), Postives = 55/112 (49.11%), Query Frame = 3 
Query:  351 VVIEACKQCQAFKCDDRPRDAHRGTPLCTITDAWLQPPRSVQLLRKRAEHVQAAVKEARPDMKVAINPEKPRKGYFEIRV-GATTVLSLPSMNRPFPPLKALDMDDVSKKVV 683
            +VIE CKQC AFK                                 RA  VQ  +  A P + V +NPEKPR+G FEIR  G  T +SL SM RPFPPLKALDMD V   ++
Sbjct:  110 IVIEHCKQCNAFK--------------------------------TRAIQVQDGLLSAFPGISVLLNPEKPRRGCFEIREEGGETFISLQSMKRPFPPLKALDMDKVISDII 189
[Close]
BLAST of jgi.p|Trimin1|352824 vs. uniprot
Match: A0A5N5J5N3_9ROSI (Uncharacterized protein n=3 Tax=Salix TaxID=40685 RepID=A0A5N5J5N3_9ROSI)

HSP 1 Score: 72.4 bits (176), Expect = 1.140e-11
Identity = 47/112 (41.96%), Postives = 55/112 (49.11%), Query Frame = 3 
Query:  351 VVIEACKQCQAFKCDDRPRDAHRGTPLCTITDAWLQPPRSVQLLRKRAEHVQAAVKEARPDMKVAINPEKPRKGYFEIRV-GATTVLSLPSMNRPFPPLKALDMDDVSKKVV 683
            +VIE CKQC AFK                                 RA  VQ  +  A P + V +NPEKPR+G FEIR  G  T +SL SM RPFPPLKALDMD V   ++
Sbjct:  122 IVIEHCKQCNAFK--------------------------------TRAIQVQDGLLSAFPGISVLLNPEKPRRGCFEIREEGGETFISLQSMKRPFPPLKALDMDKVISDII 201
[Close]
BLAST of jgi.p|Trimin1|352824 vs. uniprot
Match: A0A8J9RLQ9_9CHLO (Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RLQ9_9CHLO)

HSP 1 Score: 69.3 bits (168), Expect = 2.580e-11
Identity = 41/92 (44.57%), Postives = 54/92 (58.70%), Query Frame = 3 
Query:  420 GTPLCTITDAWLQPPRSVQLLRKRAEHVQAAVKEARPDMKVAINPEKPRKGYFEIRV--GATTVLSLPSMNRPFPPLKALDMDDVSKKVVAA 689
            G  L  + +AW             A  ++ AVKEA PD  V+INPEKPRKG FE+R   G  T +SL  M RPF  LKALD+D+++K++  A
Sbjct:   45 GKKLSLVIEAW-------------ATKLEKAVKEAVPDAVVSINPEKPRKGCFEVRDADGTKTYISLLDMPRPFTKLKALDIDELAKEIAGA 123
[Close]
BLAST of jgi.p|Trimin1|352824 vs. uniprot
Match: U5FI91_POPTR (Uncharacterized protein n=6 Tax=Populus TaxID=3689 RepID=U5FI91_POPTR)

HSP 1 Score: 69.7 bits (169), Expect = 1.050e-10
Identity = 45/112 (40.18%), Postives = 56/112 (50.00%), Query Frame = 3 
Query:  351 VVIEACKQCQAFKCDDRPRDAHRGTPLCTITDAWLQPPRSVQLLRKRAEHVQAAVKEARPDMKVAINPEKPRKGYFEIRV-GATTVLSLPSMNRPFPPLKALDMDDVSKKVV 683
            +VIE CKQC AFK                                 RA  V+ ++  A P + V +NPEKPR+G FEIR  G  T +SL +M RPFPPLKALDMD V   ++
Sbjct:  120 IVIEHCKQCNAFK--------------------------------TRAIQVKDSLLSAFPGISVLLNPEKPRRGCFEIREEGGETFISLQNMKRPFPPLKALDMDRVISDII 199
[Close]
BLAST of jgi.p|Trimin1|352824 vs. uniprot
Match: A0A022QR24_ERYGU (Uncharacterized protein n=1 Tax=Erythranthe guttata TaxID=4155 RepID=A0A022QR24_ERYGU)

HSP 1 Score: 69.7 bits (169), Expect = 1.100e-10
Identity = 43/112 (38.39%), Postives = 57/112 (50.89%), Query Frame = 3 
Query:  351 VVIEACKQCQAFKCDDRPRDAHRGTPLCTITDAWLQPPRSVQLLRKRAEHVQAAVKEARPDMKVAINPEKPRKGYFEIRV-GATTVLSLPSMNRPFPPLKALDMDDVSKKVV 683
            ++IE CKQC AFK                                 RA  V+ A++E  P ++V++NPEKPR+G FEIR  G    +SL  M RPFPPLK LDMD+V   ++
Sbjct:  130 IIIEHCKQCNAFK--------------------------------TRAIQVKTALEEGIPGIEVSLNPEKPRRGCFEIREEGGEVFISLLDMKRPFPPLKKLDMDEVISDIL 209
[Close]
BLAST of jgi.p|Trimin1|352824 vs. uniprot
Match: A0A0D3A2W3_BRAOL (Uncharacterized protein n=4 Tax=Brassicaceae TaxID=3700 RepID=A0A0D3A2W3_BRAOL)

HSP 1 Score: 67.8 bits (164), Expect = 1.520e-10
Identity = 43/112 (38.39%), Postives = 57/112 (50.89%), Query Frame = 3 
Query:  351 VVIEACKQCQAFKCDDRPRDAHRGTPLCTITDAWLQPPRSVQLLRKRAEHVQAAVKEARPDMKVAINPEKPRKGYFEIRV-GATTVLSLPSMNRPFPPLKALDMDDVSKKVV 683
            +VIE CKQC AFK                                 RA  V+  ++ A P + V +NPEKPR+G FEIRV G  T +SL  M RPF P+KALDM++V + ++
Sbjct:   62 IVIEHCKQCNAFK--------------------------------TRAIQVKEGLEGAVPGVTVTLNPEKPRRGCFEIRVEGGETFISLLEMKRPFAPMKALDMEEVIEDII 141
[Close]
BLAST of jgi.p|Trimin1|352824 vs. uniprot
Match: A0A2P2IPV2_RHIMU (Uncharacterized protein n=1 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2IPV2_RHIMU)

HSP 1 Score: 68.2 bits (165), Expect = 2.850e-10
Identity = 43/112 (38.39%), Postives = 57/112 (50.89%), Query Frame = 3 
Query:  351 VVIEACKQCQAFKCDDRPRDAHRGTPLCTITDAWLQPPRSVQLLRKRAEHVQAAVKEARPDMKVAINPEKPRKGYFEIRV-GATTVLSLPSMNRPFPPLKALDMDDVSKKVV 683
            +VIE CKQC +FK                                KRAE V+  +++A P + V +NP+KPRKG FEIR  G  T +SL  M RPF P+K LDM++V   V+
Sbjct:  105 IVIEHCKQCTSFK--------------------------------KRAEQVERGLRDAVPGITVLLNPDKPRKGCFEIREQGGETFISLLDMKRPFKPMKDLDMEEVILDVI 184
[Close]
BLAST of jgi.p|Trimin1|352824 vs. uniprot
Match: A0A836CLF1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLF1_9STRA)

HSP 1 Score: 218 bits (556), Expect = 1.640e-63
Identity = 320/320 (100.00%), Postives = 320/320 (100.00%), Query Frame = 1 
Query:    1 MADDPIFSVAPNILGFLPPDAASSEHLDVLQWARANGCPWDENTCTFAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEWTYAXXXXXXXXXXXXXXXXXXXXXETCSCARRLSADFADNGXXXXXXXXXXXXXXEPMRPMYGNSSSEEYQTSDGGSYASDDSDQDFXXXXXXXXGIESSDQXSEGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAETDGKASPAREAREAGVFSESMEL 960
            MADDPIFSVAPNILGFLPPDAASSEHLDVLQWARANGCPWDENTCTFAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEWTYAXXXXXXXXXXXXXXXXXXXXXETCSCARRLSADFADNGXXXXXXXXXXXXXXEPMRPMYGNSSSEEYQTSDGGSYASDDSDQDFXXXXXXXXGIESSDQXSEGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAETDGKASPAREAREAGVFSESMEL
Sbjct:    1 MADDPIFSVAPNILGFLPPDAASSEHLDVLQWARANGCPWDENTCTFAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEWTYAXXXXXXXXXXXXXXXXXXXXXETCSCARRLSADFADNGXXXXXXXXXXXXXXEPMRPMYGNSSSEEYQTSDGGSYASDDSDQDFXXXXXXXXGIESSDQXSEGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAETDGKASPAREAREAGVFSESMEL 320
[Close]
BLAST of jgi.p|Trimin1|352824 vs. uniprot
Match: A0A835Z2C7_9STRA (SET domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2C7_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 3.100e-5
Identity = 24/37 (64.86%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:   37 ILGFLPPDAASSEHLDVLQWARANGCPWDENTCTFAA 147
            +L F+ P A +  HL VLQWARANGCPWDE+TC+F A
Sbjct:    1 MLYFVDPYAMTGAHLGVLQWARANGCPWDESTCSFPA 37
[Close]
BLAST of jgi.p|Trimin1|352824 vs. uniprot
Match: A0A835ZGX2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGX2_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 7.880e-5
Identity = 25/48 (52.08%), Postives = 32/48 (66.67%), Query Frame = 1 
Query:    4 ADDPIFSVAPNILGFLPPD-------AASSEHLDVLQWARANGCPWDE 126
            AD P+ ++A +IL FLPP        AA +  L+VLQWA ANGCPWD+
Sbjct:   15 ADHPVLTLASHILAFLPPSIMEVCSAAAEAGDLEVLQWAHANGCPWDQ 62
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352824 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZBM5_9STRA3.690e-138100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835QTH1_VANPL9.340e-1441.07Uncharacterized protein n=1 Tax=Vanilla planifolia... [more]
A0A835PC84_VANPL1.400e-1341.07Uncharacterized protein n=2 Tax=Vanilla planifolia... [more]
A0A836XQK0_9ROSI9.250e-1241.96Selenoprotein n=2 Tax=Salix TaxID=40685 RepID=A0A8... [more]
A0A5N5J5N3_9ROSI1.140e-1141.96Uncharacterized protein n=3 Tax=Salix TaxID=40685 ... [more]
A0A8J9RLQ9_9CHLO2.580e-1144.57Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi ... [more]
U5FI91_POPTR1.050e-1040.18Uncharacterized protein n=6 Tax=Populus TaxID=3689... [more]
A0A022QR24_ERYGU1.100e-1038.39Uncharacterized protein n=1 Tax=Erythranthe guttat... [more]
A0A0D3A2W3_BRAOL1.520e-1038.39Uncharacterized protein n=4 Tax=Brassicaceae TaxID... [more]
A0A2P2IPV2_RHIMU2.850e-1038.39Uncharacterized protein n=1 Tax=Rhizophora mucrona... [more]

Pages

back to top
BLAST of jgi.p|Trimin1|352824 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A836CLF1_9STRA1.640e-63100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z2C7_9STRA3.100e-564.86SET domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A835ZGX2_9STRA7.880e-552.08Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_133contigContig_133:182074..186547 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|352824|estExt_Genemark1.C_Ctg_1330030
Descriptionselenoprotein
COG categoryS
Max annot lvl35493|Streptophyta
EggNOG OGs2CT59@1|root,2S4B2@2759|Eukaryota,37W4C@33090|Viridiplantae,3GJSN@35493|Streptophyta,4JQN3@91835|fabids
Evalue1.52e-11
Seed ortholog3694.POPTR_0018s03800.1
Hectar predicted targeting categoryother localisation
TranscriptId353146
TrackFilteredModels1
ProteinId352824
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352824gene_14039Tribonema minus UTEX_B_3156 geneContig_133 182074..186547 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352824Trimin1|352824|estExt_Genemark1.C_Ctg_1330030Tribonema minus UTEX_B_3156 polypeptideContig_133 182074..186521 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14039_7exon_14039_7Tribonema minus UTEX_B_3156 exonContig_133 182074..182162 -
exon_14039_6exon_14039_6Tribonema minus UTEX_B_3156 exonContig_133 182265..182313 -
exon_14039_5exon_14039_5Tribonema minus UTEX_B_3156 exonContig_133 183265..183351 -
exon_14039_4exon_14039_4Tribonema minus UTEX_B_3156 exonContig_133 183794..183868 -
exon_14039_3exon_14039_3Tribonema minus UTEX_B_3156 exonContig_133 184242..184337 -
exon_14039_2exon_14039_2Tribonema minus UTEX_B_3156 exonContig_133 185756..185850 -
exon_14039_1exon_14039_1Tribonema minus UTEX_B_3156 exonContig_133 186254..186547 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14039CDS_14039Tribonema minus UTEX_B_3156 CDSContig_133 186254..186521 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_14039UTR5_14039Tribonema minus UTEX_B_3156 five_prime_UTRContig_133 186522..186547 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14039 ID=mRNA_14039|Name=jgi.p|Trimin1|352824|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=785bp|location=Sequence derived from alignment at Contig_133:182074..186547- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AGAGACGCGCAGCTGAAGGCAAGAGCATGGTGTCCACCCGCACCGCCACC
GGCGTCAAGCCAGCCGTCGTCCTGCCCCCCCTCGTCAAGAAGCCCCGCAC
CAAGAAGGCAGCCTCCGCCGCCCCCAAGGCAACGACCAAAAAGGCTGAGA
AAGTAGAGGAAACGAAGGCACCCGAGCCCGCACCCGTGGAGAAGGAGGCG
GAGGCGCCTGCCCCGGAGGCCAAGGCTGCGCCGGCTAAGAAGGAGGCTCC
CAAGAAGGCCGCCAAGGCCCCCGCAAAGAAGGCGGCTCCCAAGGCAGCAG
CGGCGGCGGCGGCGACGGAGGAGGCGCCTGCTGCAGCGGCTGACTTTGAC
GTTGTCATCGAGGCCTGCAAGCAGTGCCAGGCATTCAAGTGCGACGATCG
CCCGCGCGATGCTCACCGCGGCACCCCGCTTTGCACAATAACTGACGCGT
GGCTGCAGCCGCCGCGTAGCGTACAGCTGCTGCGCAAGCGCGCGGAGCAT
GTGCAGGCCGCCGTCAAGGAGGCGCGCCCCGACATGAAGGTGGCCATCAA
CCCAGAGAAGCCCCGCAAGGGCTACTTTGAGATCAGGGTGGGCGCGACCA
CCGTTCTGAGCCTTCCCAGCATGAACCGCCCGTTCCCGCCCCTCAAGGCG
CTGGACATGGACGACGTCAGCAAGAAGGTCGTCGCCGCGCTGCCAGCCGG
CGGAGCCGCGTCGCTGGCCTCGATGCGCGGCAAGTGCCTCACTGACCAGA
GATCATACCAGCGCGAGTCCGCTGGCGGCGCGTGA
back to top

protein sequence of jgi.p|Trimin1|352824

>Trimin1|352824|estExt_Genemark1.C_Ctg_1330030 ID=Trimin1|352824|estExt_Genemark1.C_Ctg_1330030|Name=jgi.p|Trimin1|352824|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=253bp
MVSTRTATGVKPAVVLPPLVKKPRTKKAASAAPKATTKKAEKVEETKAPE
PAPVEKEAEAPAPEAKAAPAKKEAPKKAAKAPAKKAAPKAAAAAAATEEA
PAAAADFDVVIEACKQCQAFKCDDRPRDAHRGTPLCTITDAWLQPPRSVQ
LLRKRAEHVQAAVKEARPDMKVAINPEKPRKGYFEIRVGATTVLSLPSMN
RPFPPLKALDMDDVSKKVVAALPAGGAASLASMRGKCLTDQRSYQRESAG
GA*
back to top

mRNA from alignment at Contig_133:182074..186547-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14039 ID=mRNA_14039|Name=jgi.p|Trimin1|352824|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4474bp|location=Sequence derived from alignment at Contig_133:182074..186547- (Tribonema minus UTEX_B_3156 )
AGAGACGCGCAGCTGAAGGCAAGAGCATGGTGTCCACCCGCACCGCCACC
GGCGTCAAGCCAGCCGTCGTCCTGCCCCCCCTCGTCAAGAAGCCCCGCAC
CAAGAAGGCAGCCTCCGCCGCCCCCAAGGCAACGACCAAAAAGGCTGAGA
AAGTAGAGGAAACGAAGGCACCCGAGCCCGCACCCGTGGAGAAGGAGGCG
GAGGCGCCTGCCCCGGAGGCCAAGGCTGCGCCGGCTAAGAAGGAGGCTCC
CAAGAAGGCCGCCAAGGCCCCCGCAAAGAAGGCGGCTCCCAAGGGTAAAA
AATAGACACCAGGCGTGGGTGTTTGGTTGTGGAAATGTGGTGTGTCGTAC
TCCGTGCGTGGCCCCCCTGTCGATAGCCCGTTGGCTACTTTGTAAATGCA
AACCATTTTCTGCTGGTGTCGGCGGCGAGGAGCTTCTCTCAGTGTGCCCC
CCTTCTGCGCTGCAACTGCCTCCCGCCGTGCCATCAAGAGTGCGGGTCGG
TTTTCGACGCTTGAGATGCCTGCTCGCGCCACCACCAACAGCGTTGCCAC
GAGTTACACCTCATCCACTTGCATGCGGGCATGCATGCCAGGGCGCTCTG
TGCTGGTGGCAGCTCCACGTGCTGTTGGTGTGCGACCGCAGCCAGCCGCG
TTTCTTCGGAAACTCACGACAGGCCGATTGCCTGCCCGACCGTGCAGCAG
CAGCGGCGGCGGCGGCGACGGAGGAGGCGCCTGCTGCAGCGGCTGACTTT
GACGTTGTCATCGAGGCCTGCAAGCAGTGCCAGGCATTCAAGGTGAGTGA
GCGGCAACATTTTTTTTCGCAGTTGCAAGGTGTTTTCACCCCTCTGGTTT
TGTGAATGCAGCCGCTGATCGGGCGACTTGTCATTTATCCTCAATGGCTG
CAGCGGCTGTGATGCCGGTTCCGGGTGTCGCGAGTGCTTTCCCTGCATCG
GGCCGCTGTGTGGTTAAGCAGCGCAGTTTTGAAAACGCGCCCATTTAATC
GCGGCGCGCTCCCTTACACCGTACGCTGTTGTGAAACTTGTGTACCGTGC
ATGCACCTGATATTCATTGGACTGATGTGCGACAAGCGTAACGCCGCGCC
GCTGCTGGTCATCAATGTTTAAATGTGGCAGTTGGTGTTGATAGGGGGAA
GGCCTTGCCAACAGACAACATTGTACCTCGGTTGCGTCTGCATACAAAAC
GGCCAATGGCATGAGATGCGCATGCACTGACCACAATAGCGTGCGACTCT
GCCGCCGTGTGGCATCACGTTCGTGTGCGAGTACGACACGTACGTGGGCT
GTTACTTCAAGCAGTCTTGCGGTATTCGCGAAGTATGATTTGTAATAGTT
TCCATTGTCGGTTGCATCAATGGTCGATCGACAGCTGCAAGTGCTGCTGC
TGCTGATGGCAACTCCGCCAGCACCGGCACACTTTTATGGCCAGGCACCG
CGAGGTTATCCTTTGTGAAAAGGTAATCAGTCTGAGCCTTGGTCTCAGGC
GCCATGTGTGGCCTTTGCATGACTCATCAAATGCAATGCCGCAGGCGCAT
GGCTCACGTGGCATGCTTCATGATGTACGCATGCATTCCAATCACACCTC
GGTCGAAGCGCTGGCAGATCTCAACGATTACCGTTACAGCCTTGGCCAGC
AGTATACATGATGCGTCGCCGAACTGACGAGCAGGGCCCAACGCTACTGG
CACACTCATTGACGAGCTCACTGAGAGACGAGTAGTGACGCGGCGCCGAT
GAAGGTGACATAATTTCATCAAGTGTGCTTTGCGGTAGTAATCAATTACT
ATCTATTTCAGCGACACTTGCACGCGTCATGCCGCGACGCACGCTACGTC
AATCAGTCGCAGGCGCTCACGATGAAGCCGCGCAGCCGCGATCGCCGTCT
GAACTGCGGCAAAGCGTGCCACTACGTTTGCGGATGCACAGTGCCACAGC
GAGACGCACTGTCGCGATGGCGCCGACGCCAGTGCAAATGTGCACGGGCC
TGCTGCGTGAGGTGTGTGCTTCTGTGCCGCAGGTACGGCTCTACGTCTGA
GCTGCCATTCTGTGCGCATCTCCGCCGCGCCGTGAGCGATGGGAGCCTCC
GCAGTACAGTTGCGCACGCGCGCGAACGCACGCTGCCCGTCTCACACACA
TACATGGCTACCCCTGTCGTATGTATGTCACCGCAGCGCTCCTCGTGCGC
CGTCGCGCAGTGCGACGATCGCCCGCGCGATGCTCACCGCGGCACCCCGC
TTTGCACAATAACTGACGCGTGGCTGCAGCCGCCGCGTAGCGTACAGCTG
CTGCGCGTGGCGCCTTGCGCGCTCCTGTCGTAATATTCAGTGCGCCACTT
GAATTTCAAACGCAGGCAGGGGCTCGCCTATCCCCGCTGCAACGGCGCTG
TACGCGGCGCGCTGTCGTCGCGGGCTGATAGCAACAGCCACCGACTCACC
CCTGACGTGCAGGCTGCCCTCCCGCGCAGCTGAGCAAACGCGCGCCGGCG
GAACTGCATTGGCGCTCGCATGTTCAACATGTGACGCTCATACTTTTCGA
CGCGCACCGTCGCCGCTCATTGCCGTCCCCGCGCGCGTGCAAACGTGTGC
TGTGCACTGACGCGCGCCGCGCATGCCGCCGCTCTCTTGCGCTCGCCGCC
CCCCCCCCCCCCCTGTGCCCCCCCCACAGAAGCGCGCGGAGCATGTGCAG
GCCGCCGTCAAGGAGGCGCGCCCCGACATGAAGGTGGCCATCAACCCAGA
GAAGGTGAGGGGGGGCGCCGTGAGGGGGCGCCGCATTGTTAGCAAGTGAT
CGCTGAGCGCGTCTGGCGCGTCACCGGGTGCTGCTGTATGGCAGGCTTTG
CTATGCGATCGAGGATTCAAGAGAGAGAGAGAGAGTGTGTGTGTATGCGT
GCGCGCTTCGCTGTGCGATTGAGCATTAGAGAGAGAGAGTGTGTGTGTGC
GCGCGCGCACGCACGCATTGATGTGTGTATATGCAGGGTTGCTGTAGCCA
CGGATCCCGTGCGCCCCCGGCTCAATTCTGTGAAGGTCTGACGCTGCATG
AGCGCTGCCGGGCAGCACGCGCGGAAACGCCCGCATCAGCGGCTGCAGTG
CTCGTGGAGGGACGTGTCAAACCCTTGTGGTGCTCATGTGCATCAGCACT
CCCTGCTGCTGCCGCTTCTGCTACTGCTGCTGCTGCTGCCGTGCAGCCCC
GCAAGGGCTACTTTGAGATCAGGGTGGGCGCGACCACCGTTCTGAGCCTT
CCCAGCATGAACCGCCCGTTCCCGCCCCTCAAGGTGAGCGCGAAGGATCC
TGCGGTACGTTGATCGGCTGTCGCTCTTCAGTCAACCAGCGACGGCCAGT
GGGCTACTGTCTCTGGCTCACTCCAGGAGATGCATGGAGAGCACCAGCAG
TAAGCGACATAGACCTACTTGAAGTAGATTGCAGTCAGCGCCGACAGCAT
GGCATTCACAAGGCTGGTTATATCTCCTAGACCATCTCGACATCGCTGTT
GAGGGAGGGTCGTCTGCACTGCCGTGCCATGTGCGATCACCATGCTGCCA
TGGCTGTGCCAGGCGTGCCGCACGCCTGCCCGCAGCGCAGCGCTCACGCC
AGCAGTTCTGGCGCGCGCTGCGTGCCGGCAAACGGGACGTCAAGCAACCC
CTGCATACGAGACTGTAGCCGTTCGACACGCGCATGTACACGTGATGGTG
TCAAACCGACACGTCAGTGCTCAGCAAGAGCACATCGTTTTGCGCCTGCA
GGCTGCCAGCGAGCCGCGCTCAGCGCCGCGTGCCTACACACGCTGTGCAA
TGCCGCCAGGAACTCTAGCAAAGCAGTGCACTCTTGGGAGCTTGGGCTCC
ACGTGCGTGAAGCGCAGTAACGGTGTCGTGCTTCGCAGTGCTTAGAGTCG
ATGCAATCCCTGTCCACGCGGGCACACGTCGCATCATCATAGTAAGCCGC
AGCGGCTCTGACTGCTGGTTGTTACTGGACTAAATTCGCTGATGACTGTG
CCCTCCGAAATTCGGCGCCACCGGCAGCGCATGCTCCGCGCCGCCGCTCG
CTCGCCGACCGCCCGCTGAGTGATGATCACTTGCCGCCGCCGCCGTGCCT
TGCACCGGCAGCTTTCCCGCTACGTCGCGCATCAGTCTCAAACCAAGTAC
TTCGAAGAATGCGAACCGCGCGCGCGCCCTCACCCACGTCTCTCCCCATT
TCTCTCCATCACGGCGTCCGTCACCCCCGCGCAGGCGCTGGACATGGACG
ACGTCAGCAAGAAGGTCGTCGCCGCGCTGCCAGGTGAGGACCGCAATACC
CACTGCGTGATGCGAGCATCATTGAGTGCTGGAAGAGCGTGTGAAATCGA
CCCTTTGATAGAAGCGTGTGCGCGCTGCTGGACAGCCGGCGGAGCCGCGT
CGCTGGCCTCGATGCGCGGCAAGTGCCTCACTGACCAGAGATCATACCAG
CGCGAGTCCGCTGGCGGCGCGTGA
back to top

Coding sequence (CDS) from alignment at Contig_133:182074..186547-

>mRNA_14039 ID=mRNA_14039|Name=jgi.p|Trimin1|352824|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=759bp|location=Sequence derived from alignment at Contig_133:182074..186547- (Tribonema minus UTEX_B_3156 )
ATGGTGTCCACCCGCACCGCCACCGGCGTCAAGCCAGCCGTCGTCCTGCC
CCCCCTCGTCAAGAAGCCCCGCACCAAGAAGGCAGCCTCCGCCGCCCCCA
AGGCAACGACCAAAAAGGCTGAGAAAGTAGAGGAAACGAAGGCACCCGAG
CCCGCACCCGTGGAGAAGGAGGCGGAGGCGCCTGCCCCGGAGGCCAAGGC
TGCGCCGGCTAAGAAGGAGGCTCCCAAGAAGGCCGCCAAGGCCCCCGCAA
AGAAGGCGGCTCCCAAGGCAGCAGCGGCGGCGGCGGCGACGGAGGAGGCG
CCTGCTGCAGCGGCTGACTTTGACGTTGTCATCGAGGCCTGCAAGCAGTG
CCAGGCATTCAAGTGCGACGATCGCCCGCGCGATGCTCACCGCGGCACCC
CGCTTTGCACAATAACTGACGCGTGGCTGCAGCCGCCGCGTAGCGTACAG
CTGCTGCGCAAGCGCGCGGAGCATGTGCAGGCCGCCGTCAAGGAGGCGCG
CCCCGACATGAAGGTGGCCATCAACCCAGAGAAGCCCCGCAAGGGCTACT
TTGAGATCAGGGTGGGCGCGACCACCGTTCTGAGCCTTCCCAGCATGAAC
CGCCCGTTCCCGCCCCTCAAGGCGCTGGACATGGACGACGTCAGCAAGAA
GGTCGTCGCCGCGCTGCCAGCCGGCGGAGCCGCGTCGCTGGCCTCGATGC
GCGGCAAGTGCCTCACTGACCAGAGATCATACCAGCGCGAGTCCGCTGGC
GGCGCGTGA
back to top