mRNA_14017 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|352815
Unique NamemRNA_14017
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|352815 vs. uniprot
Match: A0A836CKL9_9STRA (Histidine phosphatase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKL9_9STRA)

HSP 1 Score: 595 bits (1534), Expect = 5.830e-213
Identity = 321/322 (99.69%), Postives = 321/322 (99.69%), Query Frame = 1
Query:    1 MTLSSHPEVAEALALEQPTVEAKYRVIFMRHGESTYNAEGRFIGWADPPLSALGEEEARGAGQLLREYGLGDVDEIFVSYLKRSIKTGWIVAEELGRSHIPVSSDWRLNEQMYGALEGLLKRDVAREHGLELTQKWRRSYDIAPPAVPGARGYFPAGDPKYADLTDDDAPESWCGSARTESLKDTQARAWRLWKERIAPRARAGRTCLVVAHGNVIRALLKRLDGVGAERLRDVCIPRAVPLVYELDADMRPVRAAQAMGPLSARYLANPGQIAARMKLESNEAQLGLHVPDAEAAGXXXXXXXXXXXXXXXXXXXXTAAAA 966
            MTLSSHPEVAEALALEQPTVEAKYRVIFMRHGESTYNAEGRFIGWADPPLSALGEEEARGAGQLLREYGLGDVDEIFVSYLKRSIKTGWIVAEELGRSHIPVSSDWRLNEQMYGALEGLLKRDVAREHGLELTQKWRRSYDIAPPAVPGARGYFPAGDPKYADLTDDDAPESWCGSARTESLKDTQARAWRLWKERIAPRARAGRTCLVVAHGNVIRALLKRLDGVGAERLRDVCIPRAVPLVYELDADMRPVRAAQAMGPLSARYLANPGQIAARMKLESNEAQLGLHVPDAEAAGXXXXXXXXXXXXXXXXXXX TAAAA
Sbjct:    1 MTLSSHPEVAEALALEQPTVEAKYRVIFMRHGESTYNAEGRFIGWADPPLSALGEEEARGAGQLLREYGLGDVDEIFVSYLKRSIKTGWIVAEELGRSHIPVSSDWRLNEQMYGALEGLLKRDVAREHGLELTQKWRRSYDIAPPAVPGARGYFPAGDPKYADLTDDDAPESWCGSARTESLKDTQARAWRLWKERIAPRARAGRTCLVVAHGNVIRALLKRLDGVGAERLRDVCIPRAVPLVYELDADMRPVRAAQAMGPLSARYLANPGQIAARMKLESNEAQLGLHVPDAEAAGXXXXXXXXXXXXXXXXXXXGTAAAA 322          
BLAST of jgi.p|Trimin1|352815 vs. uniprot
Match: A0A835YKM6_9STRA (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKM6_9STRA)

HSP 1 Score: 434 bits (1115), Expect = 1.190e-149
Identity = 212/264 (80.30%), Postives = 237/264 (89.77%), Query Frame = 1
Query:   76 VIFMRHGESTYNAEGRFIGWADPPLSALGEEEARGAGQLLREYGLGD-VDEIFVSYLKRSIKTGWIVAEELGRSHIPVSSDWRLNEQMYGALEGLLKRDVAREHGLELTQKWRRSYDIAPPAVPGARGYFPAGDPKYADLTDDDAPESWCGSARTESLKDTQARAWRLWKERIAPRARAGRTCLVVAHGNVIRALLKRLDGVGAERLRDVCIPRAVPLVYELDADMRPVRAAQAMGPLSARYLANPGQIAARMKLESNEAQLGL 864
            V+ +RHGESTYNAEGRFIGWADPPL+  GEEEAR A   LRE+G  D +D+IFVSYL+RSIK+GWI+A+ELG SH+PV+SDWRLNEQMYG L+G LKRDVA EHG++LTQKWRRSYDIAPPAV GARGYFPAGD KYA+LTDDDAPESWCGSA+TESLKDTQARAWRLWKERIAPRARAGRT LVV HGNVIRA+LKRLDG+G ERLR+VCIPRAVPLVYELDA+MRPVR+A A G LS  +LANP QIAA +K+ES EAQLGL
Sbjct:   12 VLSLRHGESTYNAEGRFIGWADPPLTERGEEEARRAAHALREHGFADAIDDIFVSYLRRSIKSGWIIADELGCSHVPVNSDWRLNEQMYGMLQGRLKRDVAHEHGVDLTQKWRRSYDIAPPAVAGARGYFPAGDAKYAELTDDDAPESWCGSAQTESLKDTQARAWRLWKERIAPRARAGRTSLVVGHGNVIRAMLKRLDGIGNERLREVCIPRAVPLVYELDAEMRPVRSAYAFGALSGYFLANPKQIAAALKIESTEAQLGL 275          
BLAST of jgi.p|Trimin1|352815 vs. uniprot
Match: A0A6T5MY23_HETAK (Hypothetical protein n=3 Tax=Sar TaxID=2698737 RepID=A0A6T5MY23_HETAK)

HSP 1 Score: 276 bits (706), Expect = 1.170e-86
Identity = 140/285 (49.12%), Postives = 187/285 (65.61%), Query Frame = 1
Query:   67 KYRVIFMRHGESTYNAEGRFIGWADPPLSALGEEEARGAGQLLREYGLGDVDEIFVSYLKRSIKTGWIVAEELGRSHIPVSSDWRLNEQMYGALEGLLKRDVAREHGLELTQKWRRSYDIAPPAVPGARGYFPAGDPKYADLTDDDAPESWCGSARTESLKDTQARAWRLWKERIAPRARAGRTCLVVAHGNVIRALLKRLDGVGAERLRDVCIPRAVPLVYELDADMRPVRAAQAMGPLSARYLANPGQIAARMKLESNEA----------QLGLHVPDAEAAG 891
            ++ ++F+RHGES +N +  F GW D  ++  G +EAR AG+L++  GL + D ++ S LKR+IK+   V + +G   I +  DW+LNEQMYG LEGL K D  +EHGLE  QKWRRSY   PPA PGARGYFP  DPKYA LT+ DAP+SWCG+  TESLKDTQARAWRLW+E IAP  +AG+  LV AHGN +RA L+RLD +  + L  + IPRA PLVY LD  + P+++  +M PLS R++ +  ++ A++  E  +                 PDAE AG
Sbjct:   79 RHTIVFIRHGESVWNQDNIFTGWQDIDVTEAGVQEARAAGELMQRQGL-EFDVVYTSMLKRAIKSAHHVTDAMGLGWIDMHKDWKLNEQMYGRLEGLNKVDCVQEHGLEQVQKWRRSYTDPPPARPGARGYFPEDDPKYAGLTNFDAPDSWCGTPGTESLKDTQARAWRLWREEIAPAVKAGKRVLVCAHGNTLRAFLRRLDDIPNDLLMQLDIPRATPLVYTLDEHLNPIQSTSSMYPLSGRFIGSMEELEAKVSKERTQCIPPPEKKPQRVKTAAFPDAETAG 362          
BLAST of jgi.p|Trimin1|352815 vs. uniprot
Match: A0A7S2V0B9_9STRA (Phosphoglycerate mutase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0B9_9STRA)

HSP 1 Score: 259 bits (662), Expect = 5.800e-80
Identity = 128/259 (49.42%), Postives = 174/259 (67.18%), Query Frame = 1
Query:   43 LEQPTVEAKYRVIFMRHGESTYNAEGRFIGWADPPLSALGEEEARGAGQLLREYGLGDVDEIFVSYLKRSIKTGWIVAEELGRSHIPVSSDWRLNEQMYGALEGLLKRDVAREHGLELTQKWRRSYDIAPPAVPGARGYFPAGDPKYADLTDDDAPESWCGSARTESLKDTQARAWRLWKERIAPRARAGRTCLVVAHGNVIRALLKRLDGVGAERLRDVCIPRAVPLVYELDADMRPVRAAQAMGPLSARYLANPGQI 819
            L+QP  +    V+ +RHGEST+N +  F GW D  L+  G +EAR  G+++ ++GL + D ++ S LKR+IKT  +  + + +S + V  DWRLNEQMYGALEG  K+   +EHG E  QKWRR Y  APP      GYFP  DP+YA  TD DAP+SWCGS  TESLKDTQAR W LW++ I P  ++G+  LV  HGNV+RAL+KRLD +  E ++ + IPRA+P+VY LD DM P+  A++  P+S R+LA+  Q+
Sbjct:  101 LQQPFAQ----VVLLRHGESTWNEQNIFTGWKDVGLTDRGIQEARDVGKVMNKHGL-EFDMVYTSLLKRAIKTSALTLDTMDQSFVEVRKDWRLNEQMYGALEGRNKKACVKEHGYEQVQKWRRGYHTAPPPNKKQNGYFPD-DPQYAQFTDLDAPDSWCGSPGTESLKDTQARVWSLWRKEIMPNIKSGKRVLVCCHGNVLRALMKRLDNISIETIQSIDIPRAMPIVYTLDKDMNPIMTAKSSFPISGRFLADKSQL 353          
BLAST of jgi.p|Trimin1|352815 vs. uniprot
Match: B7GEI2_PHATC (Phosphoglycerate mutase n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GEI2_PHATC)

HSP 1 Score: 229 bits (583), Expect = 4.850e-69
Identity = 115/255 (45.10%), Postives = 162/255 (63.53%), Query Frame = 1
Query:   67 KYRVIFMRHGESTYNAEGRFIGWADPPLSALGEEEARGAGQLLREYGLGDVDEIFVSYLKRSIKTGWIVAEELGRSHIPVSSDWRLNEQMYGALEGLLKRDVAREHGLELTQKWRRSYDIAPPAVPGARGYFPAGDPKYADLTDDDAPESWCGSARTESLKDTQARAWRLWKERIAPRARAGRTCLVVAHGNVIRALLKRLDGVGAERLRDVCIPRAVPLVYELDADMRPVRAAQAMGPLSARYLANPGQIAARM 831
            KY ++ +RHGEST+N E RF GW D PLS  GEEEA   GQLLRE G    D+ + S LKR+IKT WIV EE+   ++P++++WRLNE+ YGAL+GL K++   +HG +   +WRRSYDI PP +     YFP  DP Y D+  +D P++       ESLK T+ R    W++ + P  ++G   L+ AHGN +RAL+K LD +  E +  + IP  VPLVYELD +++P+    A+ PLS  YL +  ++  R+
Sbjct:   52 KYTLVLVRHGESTWNKENRFTGWVDCPLSEAGEEEAHKGGQLLREGGY-HFDKAYTSTLKRAIKTLWIVLEEMDLMYLPITNNWRLNERHYGALQGLNKQETVDKHGKDQVLEWRRSYDIPPPDIDEDSEYFPGNDPMYKDVPKEDLPKA-------ESLKLTEERFMSWWEDTLVPEIKSGTKILIAAHGNTLRALVKHLDNISPEDITGLNIPTGVPLVYELDEELKPIPHKDAIAPLSGHYLGDQEEVRNRI 298          
BLAST of jgi.p|Trimin1|352815 vs. uniprot
Match: A0A6U1NFE0_9STRA (Phosphoglycerate mutase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1NFE0_9STRA)

HSP 1 Score: 222 bits (565), Expect = 5.650e-67
Identity = 118/264 (44.70%), Postives = 164/264 (62.12%), Query Frame = 1
Query:   64 AKYRVIFMRHGESTYNAEGRFIGWADPPLSALGEEEARGAGQLLREYGLGDVDEIFVSYLKRSIKTGWIVAEELGRSHIPVSSDWRLNEQMYGALEGLLKRDVAREHGLELTQKWRRSYDIAPPAVPGARGYFPAGDPKYADLTDDDAPESWCGSARTESLKDTQARAWRLWKERIAPRARAGRTCLVVAHGNVIRALLKRLDGVGAERLRDVCIPRAVPLVYELDADMRPVRAAQAMGPLSARYLANPGQIAARMKLESNEAQ 855
            A Y+++ +RHGES +N   RF GW D  L+  G+ EA  AG+LL+E G  + D  + S LKR+I T W   E + +  IPV+ +W LNE+ YGAL+GL K++   +HG+E    WRRSYDI PP    +  Y+P  D +YA LT+D  P        TESLK T+ R    W + IAP  +AG+T L+ AHGN +RAL+KRLD + A+ +  + IP AVPLVYELDAD+ P+    A+GPL  RYL +   + AR++   N+ +
Sbjct:    2 ATYKMVLIRHGESEWNMTNRFTGWTDVSLTEKGKAEAVEAGRLLKEEGW-EFDCAYTSMLKRAIDTCWTCLEGVDQMWIPVTRNWMLNERHYGALQGLNKQETVDKHGIEQVTVWRRSYDIPPPPCDKSSEYYPGNDRRYAGLTEDQIP-------LTESLKLTEDRVAIYWDQEIAPAIKAGKTILIAAHGNSLRALVKRLDNISADDITGLNIPTAVPLVYELDADLNPIAHPDAIGPLKGRYLGDQEAVRARIEGVKNQTK 257          
BLAST of jgi.p|Trimin1|352815 vs. uniprot
Match: W7TKJ0_9STRA (Phosphoglycerate mutase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TKJ0_9STRA)

HSP 1 Score: 224 bits (571), Expect = 7.600e-67
Identity = 122/276 (44.20%), Postives = 169/276 (61.23%), Query Frame = 1
Query:   61 EAKYRVIFMRHGESTYNAEGRFIGWADPPLSALGEEEARGAGQLLREYGLGDVDEIFVSYLKRSIKTGWIVAEELGRSHIPVSSDWRLNEQMYGALEGLLKRDVAREHGLELTQKWRRSYDIAPPAVPGARGYFPAGDPKYADLTDDDAPESWCGSARTESLKDTQARAWRLWKERIAPRARAGRTCLVVAHGNVIRALLKRLDGVGAERLRDVCIPRAVPLVYELDADMRPVRAAQAMGPLSARYLANPGQIAARMKLESNEAQ-----LGLHVP 873
            + KY+++ +RHGEST+N E RF GW D PLS  G +EA  AG+ L+E  L   D  + S L+R+I T W+  EEL    IPV  +WRLNE+ YGAL+GL K++   +HG+E    WRRSYDI PP V  +  ++P  DPKYAD+     P        TESLK T+AR   LW+  I P  +AG+  ++ AHGN IRAL++ LD +  + +  + +P  VPL+YELD +M+P++ A A+ PL   YL +  +I  R K+E   AQ     LG H+P
Sbjct:   61 DKKYKIVLVRHGESTWNDENRFTGWYDCPLSIKGLKEAEEAGKALKEANLR-FDMAYTSVLRRAIHTLWMCLEELDLMWIPVKKNWRLNERHYGALQGLNKKETVDKHGIEQVNIWRRSYDIPPPPVDKSSEHYPGNDPKYADVDKSVLPV-------TESLKTTKARFLPLWENEIIPDIKAGKRIVIAAHGNTIRALVQHLDNISEDVICGLNVPTGVPLIYELDENMKPIKHADAIAPLQGHYLGDQEKI--RAKIEGVAAQTGGKKLGNHLP 326          
BLAST of jgi.p|Trimin1|352815 vs. uniprot
Match: A0A534PS58_9DELT (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A534PS58_9DELT)

HSP 1 Score: 221 bits (563), Expect = 7.970e-67
Identity = 113/231 (48.92%), Postives = 150/231 (64.94%), Query Frame = 1
Query:   70 YRVIFMRHGESTYNAEGRFIGWADPPLSALGEEEARGAGQLLREYGLGDVDEIFVSYLKRSIKTGWIVAEELGRSHIPVSSDWRLNEQMYGALEGLLKRDVAREHGLELTQKWRRSYDIAPPAVPGARGYFPAGDPKYADLTDDDAPESWCGSARTESLKDTQARAWRLWKERIAPRARAGRTCLVVAHGNVIRALLKRLDGVGAERLRDVCIPRAVPLVYELDADMRPVR 762
            ++++ +RHG+S +N E RF GW D PLSA GE EA  AGQLL+E  L   +  + S LKR+IKT WI  +EL +  IPV + WRLNE+MYGAL+GL K + AR HG      WRRS+DIAPP +P     +P  DP+YADL  ++ P        TESLK T AR    W++ IAP  R G+  L+ AHGN +RAL+K LD +G   + ++ IP  +PLVYELD ++RP+R
Sbjct:    2 HKLVLLRHGQSAWNKENRFTGWVDVPLSAAGEAEAHEAGQLLKEASLS-FEVAYTSLLKRAIKTLWIALDELDQMWIPVKNSWRLNERMYGALQGLDKAETARRHGEAQVHIWRRSFDIAPPPLPKEDPMWPGRDPRYADLRPEEVPV-------TESLKSTVARFLPYWEQEIAPAVRKGKRVLISAHGNSLRALVKHLDKIGDAEIAELNIPTGIPLVYELDEELRPMR 224          
BLAST of jgi.p|Trimin1|352815 vs. uniprot
Match: A0A7R9W4J4_9STRA (Phosphoglycerate mutase n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W4J4_9STRA)

HSP 1 Score: 223 bits (568), Expect = 1.180e-66
Identity = 116/259 (44.79%), Postives = 163/259 (62.93%), Query Frame = 1
Query:   55 TVEAKYRVIFMRHGESTYNAEGRFIGWADPPLSALGEEEARGAGQLLREYGLGDVDEIFVSYLKRSIKTGWIVAEELGRSHIPVSSDWRLNEQMYGALEGLLKRDVAREHGLELTQKWRRSYDIAPPAVPGARGYFPAGDPKYADLTDDDAPESWCGSARTESLKDTQARAWRLWKERIAPRARAGRTCLVVAHGNVIRALLKRLDGVGAERLRDVCIPRAVPLVYELDADMRPVRAAQAMGPLSARYLANPGQIAARM 831
            ++E K+ V+ +RHGEST+N E  F GW D PLS  G EEA+  G+LL++ G    D  + S LKR+IKT WI+ EE+   +IP+ + WRLNE+ YGAL+GL K++   +HG +    WRRSYD+ PP V     + P  DP+YA +  DD          TESLK T+ R    W++ I P+ +AG+  L+ AHGN +RAL+K LDG+  E + ++ IP  VPLVYELD D++P+    A+ PL  RYL +  +I AR+
Sbjct:   60 SLEMKHTVVLVRHGESTWNKENLFTGWVDVPLSDKGREEAQAGGELLKDGGF-TFDLCYTSTLKRAIKTLWIILEEMDLMYIPIVNTWRLNERHYGALQGLNKQETVAKHGKDQVLIWRRSYDVPPPTVDRDSEHHPCNDPRYAGVEFDDE--------FTESLKLTEERFMPDWEDVIGPQIKAGKKVLIAAHGNTLRALVKHLDGISEEEICELNIPTGVPLVYELDDDLKPIPQEDAIAPLQGRYLGDQEEIRARI 309          
BLAST of jgi.p|Trimin1|352815 vs. uniprot
Match: A0A2W4LL71_9PROT (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4LL71_9PROT)

HSP 1 Score: 220 bits (560), Expect = 2.390e-66
Identity = 114/231 (49.35%), Postives = 149/231 (64.50%), Query Frame = 1
Query:   70 YRVIFMRHGESTYNAEGRFIGWADPPLSALGEEEARGAGQLLREYGLGDVDEIFVSYLKRSIKTGWIVAEELGRSHIPVSSDWRLNEQMYGALEGLLKRDVAREHGLELTQKWRRSYDIAPPAVPGARGYFPAGDPKYADLTDDDAPESWCGSARTESLKDTQARAWRLWKERIAPRARAGRTCLVVAHGNVIRALLKRLDGVGAERLRDVCIPRAVPLVYELDADMRPVR 762
            ++++ +RHG+S +N E RF GW D PLS LG EEAR A +L+R+ GLG  D  + S LKR+IKT WIV EEL    IPV   WR NE+MYGAL+GL K + A  HG E  + WRRSYD+ PP +  +  Y+P  DP+YA +  ++ P       RTE LKDT  R   LW+  IAP  R G   L+ AHGN +RAL+K LDG+  E + ++ IP  +PLVYELD  +RP+R
Sbjct:    2 HKLVLLRHGQSQWNQENRFTGWVDVPLSPLGVEEAREAARLIRDAGLG-FDVAYTSVLKRAIKTLWIVLEELDLMWIPVVRSWRANERMYGALQGLNKAETAARHGEEQVKIWRRSYDVPPPPLDESHEYWPGKDPRYARVPREELP-------RTECLKDTVRRFLPLWESDIAPAIRRGERVLIAAHGNSLRALVKHLDGISDEDIVELNIPTGIPLVYELDDALRPIR 224          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352815 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CKL9_9STRA5.830e-21399.69Histidine phosphatase superfamily n=1 Tax=Tribonem... [more]
A0A835YKM6_9STRA1.190e-14980.302,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
A0A6T5MY23_HETAK1.170e-8649.12Hypothetical protein n=3 Tax=Sar TaxID=2698737 Rep... [more]
A0A7S2V0B9_9STRA5.800e-8049.42Phosphoglycerate mutase n=1 Tax=Fibrocapsa japonic... [more]
B7GEI2_PHATC4.850e-6945.10Phosphoglycerate mutase n=2 Tax=Phaeodactylum tric... [more]
A0A6U1NFE0_9STRA5.650e-6744.70Phosphoglycerate mutase n=1 Tax=Fibrocapsa japonic... [more]
W7TKJ0_9STRA7.600e-6744.20Phosphoglycerate mutase n=2 Tax=Monodopsidaceae Ta... [more]
A0A534PS58_9DELT7.970e-6748.922,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
A0A7R9W4J4_9STRA1.180e-6644.79Phosphoglycerate mutase n=1 Tax=Pseudictyota dubia... [more]
A0A2W4LL71_9PROT2.390e-6649.352,3-bisphosphoglycerate-dependent phosphoglycerate... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_133contigContig_133:41321..43598 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|352815|estExt_Genemark1.C_Ctg_1330006
BRITEko00000,ko00001,ko00002,ko01000,ko04131,ko04147
KEGG rclassRC00536
KEGG ReactionR01518
KEGG ModuleM00001,M00002,M00003
KEGG Pathwayko00010,ko00260,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04922,ko05230,map00010,map00260,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map04922,map05230
KEGG koko:K01834
EC5.4.2.11
DescriptionPhosphoglycerate mutase family
COG categoryG
Max annot lvl2836|Bacillariophyta
EggNOG OGsCOG0588@1|root,KOG0235@2759|Eukaryota,2XEPX@2836|Bacillariophyta
Evalue1.96e-71
Seed ortholog2850.Phatr17086
Hectar predicted targeting categoryother localisation
TranscriptId353137
TrackFilteredModels1
ProteinId352815
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352815gene_14017Tribonema minus UTEX_B_3156 geneContig_133 41321..43598 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14017_3exon_14017_3Tribonema minus UTEX_B_3156 exonContig_133 41321..42159 -
exon_14017_2exon_14017_2Tribonema minus UTEX_B_3156 exonContig_133 42898..43143 -
exon_14017_1exon_14017_1Tribonema minus UTEX_B_3156 exonContig_133 43510..43598 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_14017UTR3_14017Tribonema minus UTEX_B_3156 three_prime_UTRContig_133 41321..41525 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14017CDS_14017Tribonema minus UTEX_B_3156 CDSContig_133 43510..43598 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352815Trimin1|352815|estExt_Genemark1.C_Ctg_1330006Tribonema minus UTEX_B_3156 polypeptideContig_133 41526..43598 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14017 ID=mRNA_14017|Name=jgi.p|Trimin1|352815|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1174bp|location=Sequence derived from alignment at Contig_133:41321..43598- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGACGCTGAGCTCTCATCCTGAGGTAGCGGAGGCGCTGGCGCTGGAGCA
GCCCACCGTGGAGGCCAAGTACCGCGTGATTTTCATGAGGCACGGAGAGT
CCACGTACAACGCAGAGGGGCGCTTCATAGGCTGGGCGGACCCCCCCCTG
AGCGCGCTGGGCGAGGAGGAGGCCAGGGGCGCGGGGCAGCTGCTCAGGGA
GTACGGGCTGGGGGACGTGGATGAGATCTTCGTGAGCTACCTCAAGCGCA
GCATCAAGACGGGGTGGATCGTCGCCGAGGAGCTGGGGCGCTCGCACATC
CCCGTGTCCAGCGACTGGCGCCTGAACGAGCAGATGTACGGCGCGCTGGA
GGGCCTCCTGAAGCGCGACGTCGCGCGCGAGCACGGCCTCGAGCTCACGC
AGAAGTGGCGGCGCTCATACGACATCGCGCCGCCCGCGGTGCCGGGCGCG
CGCGGCTACTTCCCCGCGGGCGACCCCAAGTACGCAGACCTCACGGACGA
CGACGCGCCGGAGTCATGGTGCGGCAGCGCGCGCACGGAGAGCCTCAAGG
ACACGCAGGCGCGCGCGTGGAGGCTGTGGAAGGAGCGCATCGCGCCGCGC
GCGCGCGCCGGCCGCACGTGTCTCGTCGTCGCCCACGGCAACGTCATCCG
CGCGCTGCTCAAGCGCCTCGACGGCGTCGGCGCGGAGCGCCTGCGCGACG
TGTGCATCCCGCGCGCGGTGCCGCTCGTCTACGAGCTGGATGCGGACATG
CGCCCCGTGCGCGCCGCGCAGGCCATGGGGCCGCTCTCCGCGCGCTACCT
CGCGAACCCGGGGCAGATCGCCGCGCGCATGAAGCTCGAGTCCAACGAGG
CGCAGCTGGGGCTGCACGTGCCCGATGCGGAGGCTGCCGGCGGCGGCGGC
GGCGGCGGCGGCGGCAGCGGCGGCGACAGCGGCATTGAGAGCGGTGGCGG
CACGGCGGCGGCGGCGTGAGGAGCGCGCGAGAGAGCAGTGGGGTCATGTA
TTTTCTCTTGAGAAAGTGGCCGTTTTGTCAAATAGAGAAGAGAGAGAGAG
AGAGACGGAGCAAGAGGGAGGGGCGGAGGCGCGGGAACAGGAGCTTTGGC
CAGGACACGTGGTGGGTCGTGATGCGTGTAGATAGAAGGGGGGGGCGCGG
GGGCACAAGGGTGACATATCGTGG
back to top

protein sequence of jgi.p|Trimin1|352815

>Trimin1|352815|estExt_Genemark1.C_Ctg_1330006 ID=Trimin1|352815|estExt_Genemark1.C_Ctg_1330006|Name=jgi.p|Trimin1|352815|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=323bp
MTLSSHPEVAEALALEQPTVEAKYRVIFMRHGESTYNAEGRFIGWADPPL
SALGEEEARGAGQLLREYGLGDVDEIFVSYLKRSIKTGWIVAEELGRSHI
PVSSDWRLNEQMYGALEGLLKRDVAREHGLELTQKWRRSYDIAPPAVPGA
RGYFPAGDPKYADLTDDDAPESWCGSARTESLKDTQARAWRLWKERIAPR
ARAGRTCLVVAHGNVIRALLKRLDGVGAERLRDVCIPRAVPLVYELDADM
RPVRAAQAMGPLSARYLANPGQIAARMKLESNEAQLGLHVPDAEAAGGGG
GGGGGSGGDSGIESGGGTAAAA*
back to top

mRNA from alignment at Contig_133:41321..43598-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14017 ID=mRNA_14017|Name=jgi.p|Trimin1|352815|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2278bp|location=Sequence derived from alignment at Contig_133:41321..43598- (Tribonema minus UTEX_B_3156 )
ATGACGCTGAGCTCTCATCCTGAGGTAGCGGAGGCGCTGGCGCTGGAGCA GCCCACCGTGGAGGCCAAGTACCGCGTGATTTTCATGAGGTGCGTGTTCA TATTGTGCAGCGTGCGTGCGCTGCTGCTGAGATGCGGGCATTGGAGGGCG TATAGGCATGGTGTCGCTGCAAACTACAAAAAAGAGTTGGTCTCGCATAC GAGCCCCACGCGCGCCGTGCATACTTTAAGGCATGTCGGCACTCAACGCC TTGCAAAGGAGACAGCAGCGGGCTCGCGCGGTGGAAAGGACATGTCGGCG CCACATGCGACGTGCAAGGTACGCCTTCCATTCATGCAGCACTTCGCCGG AAACCTCCAGGGGCAGCAGTTCGCCATCCCGCCATCGTCTCCCGCTTCCC GCCTGTTCCGTGTCGCTCACCTCGACAATGGTGCGACATGTCCTCCGTTT GTCAGGCACGGAGAGTCCACGTACAACGCAGAGGGGCGCTTCATAGGCTG GGCGGACCCCCCCCTGAGCGCGCTGGGCGAGGAGGAGGCCAGGGGCGCGG GGCAGCTGCTCAGGGAGTACGGGCTGGGGGACGTGGATGAGATCTTCGTG AGCTACCTCAAGCGCAGCATCAAGACGGGGTGGATCGTCGCCGAGGAGCT GGGGCGCTCGCACATCCCCGTGTCCAGCGACTGGCGCCTGAACGAGCAGA TGTGAGTGCCACTGCGGGTGTGCCAGATAGGCTGTGTTTGACAGTCAAAT GTGGGCCCTGAGTGACTGTAACTACAGGGCTGTTGTGATTGCCATGCACT TCCGTTGACGATGCTGGGGCAACGCGGAGGCGGCGCAGTCCCCACAGGCG TAGCAGAAGCATCGCCTGCCGGCGTGCAGAAGGGGTCGCCCTGCAAGCGA CTGTTTGCGTGCAGAGCACCTGACCCCACCAACCTGTCCGTTGCCAGAGT GCACATGGCCTCTGACCCCGGTGCTGTCCGCGTGGGACTGGTGAGGTGCA TCAGCGTGAGTCCATGAAGCTCCTGAAGCTCCTACGAGCCGCATTGTTGT AGAAAGATCCACGTCGCAGCTGATTTCATCGTGCCGTGTGCGCGATGCTA CCCGCTTCCCCACTCCGGAAAGTCAGCCACTCATGTGACTGACTGCGGCG GCCTGCACCGCGCGCGCGCTGCGCAGTGCTTGCTCTGGCAGGTAGCGCTA CCATCCTGACAGCCGCTGTACATCACGTGTGCGCTGCCCACAAATACAAA GCTATCCCCTCTCACACTGCACACCGCGCTCACCATTGAAAAAGCAGCCC AGGCTCTCAGTTGCAAGCACGCCGCTCCAGTGCACCTCGCACTACTATGC TCCCTCCCGCCCCCCTCGCCGGACCGGCACAAAGCACACAGACAGCCCTT GACGCACCCCCCGCCCCCTCTCCCCCCACGGCGCCGCAGGTACGGCGCGC TGGAGGGCCTCCTGAAGCGCGACGTCGCGCGCGAGCACGGCCTCGAGCTC ACGCAGAAGTGGCGGCGCTCATACGACATCGCGCCGCCCGCGGTGCCGGG CGCGCGCGGCTACTTCCCCGCGGGCGACCCCAAGTACGCAGACCTCACGG ACGACGACGCGCCGGAGTCATGGTGCGGCAGCGCGCGCACGGAGAGCCTC AAGGACACGCAGGCGCGCGCGTGGAGGCTGTGGAAGGAGCGCATCGCGCC GCGCGCGCGCGCCGGCCGCACGTGTCTCGTCGTCGCCCACGGCAACGTCA TCCGCGCGCTGCTCAAGCGCCTCGACGGCGTCGGCGCGGAGCGCCTGCGC GACGTGTGCATCCCGCGCGCGGTGCCGCTCGTCTACGAGCTGGATGCGGA CATGCGCCCCGTGCGCGCCGCGCAGGCCATGGGGCCGCTCTCCGCGCGCT ACCTCGCGAACCCGGGGCAGATCGCCGCGCGCATGAAGCTCGAGTCCAAC GAGGCGCAGCTGGGGCTGCACGTGCCCGATGCGGAGGCTGCCGGCGGCGG CGGCGGCGGCGGCGGCGGCAGCGGCGGCGACAGCGGCATTGAGAGCGGTG GCGGCACGGCGGCGGCGGCGTGAGGAGCGCGCGAGAGAGCAGTGGGGTCA TGTATTTTCTCTTGAGAAAGTGGCCGTTTTGTCAAATAGAGAAGAGAGAG AGAGAGAGACGGAGCAAGAGGGAGGGGCGGAGGCGCGGGAACAGGAGCTT TGGCCAGGACACGTGGTGGGTCGTGATGCGTGTAGATAGAAGGGGGGGGC GCGGGGGCACAAGGGTGACATATCGTGG
back to top

Coding sequence (CDS) from alignment at Contig_133:41321..43598-

>mRNA_14017 ID=mRNA_14017|Name=jgi.p|Trimin1|352815|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=969bp|location=Sequence derived from alignment at Contig_133:41321..43598- (Tribonema minus UTEX_B_3156 )
ATGACGCTGAGCTCTCATCCTGAGGTAGCGGAGGCGCTGGCGCTGGAGCA
GCCCACCGTGGAGGCCAAGTACCGCGTGATTTTCATGAGGCACGGAGAGT
CCACGTACAACGCAGAGGGGCGCTTCATAGGCTGGGCGGACCCCCCCCTG
AGCGCGCTGGGCGAGGAGGAGGCCAGGGGCGCGGGGCAGCTGCTCAGGGA
GTACGGGCTGGGGGACGTGGATGAGATCTTCGTGAGCTACCTCAAGCGCA
GCATCAAGACGGGGTGGATCGTCGCCGAGGAGCTGGGGCGCTCGCACATC
CCCGTGTCCAGCGACTGGCGCCTGAACGAGCAGATGTACGGCGCGCTGGA
GGGCCTCCTGAAGCGCGACGTCGCGCGCGAGCACGGCCTCGAGCTCACGC
AGAAGTGGCGGCGCTCATACGACATCGCGCCGCCCGCGGTGCCGGGCGCG
CGCGGCTACTTCCCCGCGGGCGACCCCAAGTACGCAGACCTCACGGACGA
CGACGCGCCGGAGTCATGGTGCGGCAGCGCGCGCACGGAGAGCCTCAAGG
ACACGCAGGCGCGCGCGTGGAGGCTGTGGAAGGAGCGCATCGCGCCGCGC
GCGCGCGCCGGCCGCACGTGTCTCGTCGTCGCCCACGGCAACGTCATCCG
CGCGCTGCTCAAGCGCCTCGACGGCGTCGGCGCGGAGCGCCTGCGCGACG
TGTGCATCCCGCGCGCGGTGCCGCTCGTCTACGAGCTGGATGCGGACATG
CGCCCCGTGCGCGCCGCGCAGGCCATGGGGCCGCTCTCCGCGCGCTACCT
CGCGAACCCGGGGCAGATCGCCGCGCGCATGAAGCTCGAGTCCAACGAGG
CGCAGCTGGGGCTGCACGTGCCCGATGCGGAGGCTGCCGGCGGCGGCGGC
GGCGGCGGCGGCGGCAGCGGCGGCGACAGCGGCATTGAGAGCGGTGGCGG
CACGGCGGCGGCGGCGTGA
back to top