mRNA_14016 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|176057
Unique NamemRNA_14016
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|176057 vs. uniprot
Match: A0A836CLS4_9STRA (RING-type domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLS4_9STRA)

HSP 1 Score: 136 bits (343), Expect = 4.160e-41
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1 
Query:    1 MTPCDDCSICLDQLPSERGTLQCGHTFCFGCIVSWSERQNTCPLCQGRFDSIVQASTARG 180
            MTPCDDCSICLDQLPSERGTLQCGHTFCFGCIVSWSERQNTCPLCQGRFDSIVQASTARG
Sbjct:    1 MTPCDDCSICLDQLPSERGTLQCGHTFCFGCIVSWSERQNTCPLCQGRFDSIVQASTARG 60
[Close]
BLAST of jgi.p|Trimin1|176057 vs. uniprot
Match: A0A6C0KAP9_9ZZZZ (RING-type domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0KAP9_9ZZZZ)

HSP 1 Score: 66.6 bits (161), Expect = 7.720e-12
Identity = 25/56 (44.64%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:   13 DDCSICLDQLPSERGTLQCGHTFCFGCIVSWSERQNTCPLCQGRFDSIVQASTARG 180
            +DC IC  Q+P+ R TL+CGH+FC  CI++W +R N+CP+C+    ++ +A+  RG
Sbjct:   94 EDCCICYSQIPNARTTLECGHSFCTKCILTWFQRNNSCPMCRA---TVPEAAGQRG 146
[Close]
BLAST of jgi.p|Trimin1|176057 vs. uniprot
Match: A0A7S2WDV2_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WDV2_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 6.730e-10
Identity = 26/54 (48.15%), Postives = 34/54 (62.96%), Query Frame = 1 
Query:   13 DDCSICLDQ--LPSERGTLQCGHTFCFGCIVSWSERQNTCPLCQGRFDSIVQAS 168
            D C ICL+Q  L        C H FCFGCI +W++R+NTCPLC+ RF  I + +
Sbjct:   95 DQCCICLEQPLLKDSAKVNGCDHKFCFGCIETWADRENTCPLCKTRFSQIERCT 148
[Close]
BLAST of jgi.p|Trimin1|176057 vs. uniprot
Match: A0A7S3Z1M5_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Z1M5_9EUKA)

HSP 1 Score: 60.8 bits (146), Expect = 2.450e-9
Identity = 27/46 (58.70%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:   19 CSICLDQLPSERGTLQCGHTFCFGCIVSWSERQNTCPLCQGRFDSI 156
            C+ICL  L +  G L CGHTFCF CI +WS+R N CPLC+ RF  I
Sbjct:   62 CTICLGPLRA-WGILPCGHTFCFTCIQTWSQRDNRCPLCKRRFYHI 106
[Close]
BLAST of jgi.p|Trimin1|176057 vs. uniprot
Match: UPI001CC4CE61 (uncharacterized protein LOC122650166 n=1 Tax=Telopea speciosissima TaxID=54955 RepID=UPI001CC4CE61)

HSP 1 Score: 59.7 bits (143), Expect = 6.260e-9
Identity = 27/58 (46.55%), Postives = 32/58 (55.17%), Query Frame = 1 
Query:   19 CSICLDQLPSERGTLQCGHTFCFGCIVSW------SERQNTCPLCQGRFDSIVQASTA 174
            C IC     S RG L CGH FC+ CI  W      S +  TCPLC+GRF SI++   A
Sbjct:  410 CVICWTDFSSTRGVLPCGHRFCYSCIQGWADHMASSRKVATCPLCKGRFMSIMKVDCA 467
[Close]
BLAST of jgi.p|Trimin1|176057 vs. uniprot
Match: A0A7S0KY80_9STRA (Hypothetical protein n=1 Tax=Asterionellopsis glacialis TaxID=33640 RepID=A0A7S0KY80_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 8.500e-9
Identity = 29/64 (45.31%), Postives = 41/64 (64.06%), Query Frame = 1 
Query:    1 MTPCDDCSICL-DQLPSERGTLQ-CGHTFCFGCIVSWSERQNTCPLCQGRFDSI--VQASTARG 180
            ++P  +C ICL D  P++  ++  C H FCF CI +W+ R+NTCPLC+ RF  I  +Q S  RG
Sbjct:  194 LSPLPNCCICLCDIEPNDISSIDGCNHRFCFECIETWANRENTCPLCKIRFTKIGRLQNSNRRG 257
[Close]
BLAST of jgi.p|Trimin1|176057 vs. uniprot
Match: A0A6P9BAU2_PANGU (E3 ubiquitin-protein ligase RNF135 n=1 Tax=Pantherophis guttatus TaxID=94885 RepID=A0A6P9BAU2_PANGU)

HSP 1 Score: 57.0 bits (136), Expect = 5.570e-8
Identity = 25/51 (49.02%), Postives = 32/51 (62.75%), Query Frame = 1 
Query:   19 CSICLDQLPSERGTLQCGHTFCFGCIVSWSERQNTCPLCQGRFDSIVQAST 171
            CSICLD L S   T++CGH+FC GCI  W + Q+ CP C+ R D  +   T
Sbjct:   37 CSICLDLL-SNPATVECGHSFCLGCIRKWLKGQHECPNCKRRVDQKLPERT 86
[Close]
BLAST of jgi.p|Trimin1|176057 vs. uniprot
Match: UPI001C4F3343 (uncharacterized protein LOC122065540 isoform X1 n=3 Tax=Macadamia integrifolia TaxID=60698 RepID=UPI001C4F3343)

HSP 1 Score: 57.0 bits (136), Expect = 5.610e-8
Identity = 25/58 (43.10%), Postives = 32/58 (55.17%), Query Frame = 1 
Query:   19 CSICLDQLPSERGTLQCGHTFCFGCIVSWSERQNT------CPLCQGRFDSIVQASTA 174
            C IC     S RG L CGH FC+ CI  W++   +      CPLC+GRF SI++   A
Sbjct:  425 CVICWTGFSSTRGVLPCGHRFCYSCIQGWADHMASSGKVAACPLCKGRFMSIMKVDCA 482
[Close]
BLAST of jgi.p|Trimin1|176057 vs. uniprot
Match: A0A6H5L829_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L829_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 7.640e-8
Identity = 26/50 (52.00%), Postives = 31/50 (62.00%), Query Frame = 1 
Query:   19 CSICLDQLPS-ERGTLQCGHTFCFGCIVSWSERQNT---CPLCQGRFDSI 156
            C IC + LP  ERG + CGHTFCFGCI +WS R      CP C+  F+ I
Sbjct:   58 CIICQEALPDIERGIIACGHTFCFGCIHTWSSRSGDSVLCPSCRVPFNKI 107
[Close]
BLAST of jgi.p|Trimin1|176057 vs. uniprot
Match: UPI001EDD963B (suppressor protein SRP40-like isoform X1 n=4 Tax=Daphnia TaxID=6668 RepID=UPI001EDD963B)

HSP 1 Score: 55.5 bits (132), Expect = 8.120e-8
Identity = 21/47 (44.68%), Postives = 30/47 (63.83%), Query Frame = 1 
Query:   19 CSICLDQLPSERGTLQCGHTFCFGCIVSWSERQNTCPLCQGRFDSIV 159
            C ICL  + ++     C HTFCF C++ WSE +  CPLC+G F +I+
Sbjct:   40 CVICLQIITNKSFANNCLHTFCFECLLKWSEERAECPLCKGPFTAII 86
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|176057 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CLS4_9STRA4.160e-41100.00RING-type domain-containing protein (Fragment) n=1... [more]
A0A6C0KAP9_9ZZZZ7.720e-1244.64RING-type domain-containing protein n=1 Tax=viral ... [more]
A0A7S2WDV2_9STRA6.730e-1048.15Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S3Z1M5_9EUKA2.450e-958.70Hypothetical protein (Fragment) n=1 Tax=Lotharella... [more]
UPI001CC4CE616.260e-946.55uncharacterized protein LOC122650166 n=1 Tax=Telop... [more]
A0A7S0KY80_9STRA8.500e-945.31Hypothetical protein n=1 Tax=Asterionellopsis glac... [more]
A0A6P9BAU2_PANGU5.570e-849.02E3 ubiquitin-protein ligase RNF135 n=1 Tax=Panther... [more]
UPI001C4F33435.610e-843.10uncharacterized protein LOC122065540 isoform X1 n=... [more]
A0A6H5L829_9PHAE7.640e-852.00RING-type domain-containing protein n=1 Tax=Ectoca... [more]
UPI001EDD963B8.120e-844.68suppressor protein SRP40-like isoform X1 n=4 Tax=D... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_133contigContig_133:38574..38753 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|176057|e_gw1.133.75.1
BRITEko00000,ko01009
KEGG koko:K17586
DescriptionmRNA processing
COG categoryLO
Max annot lvl2759|Eukaryota
EggNOG OGsKOG0825@1|root,KOG0825@2759|Eukaryota
Evalue1.07e-12
Seed ortholog227086.JGI_V11_61809
Hectar predicted targeting categoryother localisation
TranscriptId176379
TrackFilteredModels1
ProteinId176057
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|176057gene_14016Tribonema minus UTEX_B_3156 geneContig_133 38574..38753 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14016_1exon_14016_1Tribonema minus UTEX_B_3156 exonContig_133 38574..38753 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14016CDS_14016Tribonema minus UTEX_B_3156 CDSContig_133 38574..38753 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|176057Trimin1|176057|e_gw1.133.75.1Tribonema minus UTEX_B_3156 polypeptideContig_133 38574..38753 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14016 ID=mRNA_14016|Name=jgi.p|Trimin1|176057|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=180bp|location=Sequence derived from alignment at Contig_133:38574..38753+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGACTCCTTGTGATGACTGCAGCATCTGCCTGGACCAGCTGCCCTCCGA
GCGAGGCACGCTGCAGTGTGGCCATACCTTCTGTTTCGGATGCATCGTGT
CCTGGAGCGAGAGGCAGAACACCTGTCCGTTGTGTCAAGGCAGGTTCGAT
TCGATCGTACAGGCCAGCACCGCGCGCGGC
back to top

protein sequence of jgi.p|Trimin1|176057

>Trimin1|176057|e_gw1.133.75.1 ID=Trimin1|176057|e_gw1.133.75.1|Name=jgi.p|Trimin1|176057|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=60bp
MTPCDDCSICLDQLPSERGTLQCGHTFCFGCIVSWSERQNTCPLCQGRFD
SIVQASTARG
back to top

mRNA from alignment at Contig_133:38574..38753+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14016 ID=mRNA_14016|Name=jgi.p|Trimin1|176057|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=180bp|location=Sequence derived from alignment at Contig_133:38574..38753+ (Tribonema minus UTEX_B_3156 )
ATGACTCCTTGTGATGACTGCAGCATCTGCCTGGACCAGCTGCCCTCCGA
GCGAGGCACGCTGCAGTGTGGCCATACCTTCTGTTTCGGATGCATCGTGT
CCTGGAGCGAGAGGCAGAACACCTGTCCGTTGTGTCAAGGCAGGTTCGAT
TCGATCGTACAGGCCAGCACCGCGCGCGGC
back to top

Coding sequence (CDS) from alignment at Contig_133:38574..38753+

>mRNA_14016 ID=mRNA_14016|Name=jgi.p|Trimin1|176057|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=180bp|location=Sequence derived from alignment at Contig_133:38574..38753+ (Tribonema minus UTEX_B_3156 )
ATGACTCCTTGTGATGACTGCAGCATCTGCCTGGACCAGCTGCCCTCCGA
GCGAGGCACGCTGCAGTGTGGCCATACCTTCTGTTTCGGATGCATCGTGT
CCTGGAGCGAGAGGCAGAACACCTGTCCGTTGTGTCAAGGCAGGTTCGAT
TCGATCGTACAGGCCAGCACCGCGCGCGGC
back to top