mRNA_13996 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|135391
Unique NamemRNA_13996
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|135391 vs. uniprot
Match: A0A836CNH5_9STRA (Kinase-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNH5_9STRA)

HSP 1 Score: 427 bits (1097), Expect = 3.760e-151
Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 1
Query:    1 DILPAFDEADLYLSLSDIILGAQIGQGAFSKVYVGRYQGELVAVKKQKRADDELETYLLRELAVLKHFQHENMIRYVGGTQVCQPDGTAHVYIVTELAEHGDVLALLLCGAAIGWRLRASILLDATRALEYLHGKRLIHRDIKSANLLLDRNFNCKLAGEFVSYFGMARPLGLNMTIVGTDAYIAPELMFDEPYNTAADMFSLGVVAWESIYRK 642
            DILPAFDEADLYLSLSDIILGAQIGQGAFSKVYVGRYQGELVAVKKQKRADDELETYLLRELAVLKHFQHENMIRYVGGTQVCQPDGTAHVYIVTELAEHGDVLALLLCGAAIGWRLRASILLDATRALEYLHGKRLIHRDIKSANLLLDRNFNCKLAGEFVSYFGMARPLGLNMTIVGTDAYIAPELMFDEPYNTAADMFSLGVVAWESIYRK
Sbjct:    1 DILPAFDEADLYLSLSDIILGAQIGQGAFSKVYVGRYQGELVAVKKQKRADDELETYLLRELAVLKHFQHENMIRYVGGTQVCQPDGTAHVYIVTELAEHGDVLALLLCGAAIGWRLRASILLDATRALEYLHGKRLIHRDIKSANLLLDRNFNCKLAGEFVSYFGMARPLGLNMTIVGTDAYIAPELMFDEPYNTAADMFSLGVVAWESIYRK 214          
BLAST of jgi.p|Trimin1|135391 vs. uniprot
Match: A0A835ZKA0_9STRA (LISK family protein kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKA0_9STRA)

HSP 1 Score: 298 bits (762), Expect = 3.620e-93
Identity = 150/215 (69.77%), Postives = 180/215 (83.72%), Query Frame = 1
Query:    7 LPAFDEADLYLSLSDIILGAQIGQGAFSKVYVGRYQGELVAVKKQKRA-DDELETYLLRELAVLKHFQHENMIRYVGGTQVCQP--DGTAHVYIVTELAEHGDVLALLLCGAAIGWRLRASILLDATRALEYLHGKRLIHRDIKSANLLLDRNFNCKLAGEFVSYFGMARPLGLNMTIVGTDAYIAPELMFDEPYNTAADMFSLGVVAWESIYRK 642
            LPAF+E+D YL++ D++LGAQIGQGAFSKVYVG+Y GELVAVKKQKRA +D LETYLLRELAVLKHF+H N++ Y+G + V     DG + +YIVTELAEHGD+LALLL   ++GW+LR S+LLDA RALE+LH K LIHRDIKS N+LLD NFNCK+A      FGMAR +G NMTIVGTDAY+APELMFDEPY+T+ADMFS G+V WE+IYR+
Sbjct:   29 LPAFEESDFYLNMDDVLLGAQIGQGAFSKVYVGKYLGELVAVKKQKRAVNDGLETYLLRELAVLKHFEHPNLLSYLGASDVPGEGIDGASAIYIVTELAEHGDLLALLLGNYSLGWKLRVSMLLDAARALEFLHSKSLIHRDIKSPNMLLDLNFNCKIAD-----FGMARQIGTNMTIVGTDAYMAPELMFDEPYDTSADMFSFGIVLWETIYRR 238          
BLAST of jgi.p|Trimin1|135391 vs. uniprot
Match: A0A6H5JRN5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JRN5_9PHAE)

HSP 1 Score: 276 bits (706), Expect = 1.030e-83
Identity = 137/212 (64.62%), Postives = 168/212 (79.25%), Query Frame = 1
Query:   13 AFDEADLYLSLSDIILGAQIGQGAFSKVYVGRYQGELVAVKKQKRADDELETYLLRELAVLKHFQHENMIRYVGGTQVC--QPDGTAHVYIVTELAEHGDVLALLLCGAAIGWRLRASILLDATRALEYLHGKRLIHRDIKSANLLLDRNFNCKLAGEFVSYFGMARPLGLNMTIVGTDAYIAPELMFDEPYNTAADMFSLGVVAWESIYRK 642
            +F+++D YL++ D+ +G QIGQGAFSKVY+GRY GELVAVKKQ R + +LE YL+RELAVLKHFQHEN+++YVG +     +P GT HV+IVTELA  GD+LALLL    +GW+LR SIL+DA RAL++LH K LIHRDIKS N+LLD    CKLA      FGMAR LG NMT+VGTDAY+APELMFD PY T+ADMFS G+V WE+IYR+
Sbjct:   28 SFNDSDFYLNMDDVDIGPQIGQGAFSKVYLGRYFGELVAVKKQARREADLEAYLMRELAVLKHFQHENLLQYVGASNAASAEPGGTGHVFIVTELACGGDLLALLLSEKQVGWKLRVSILMDAARALDFLHRKSLIHRDIKSPNILLDSRHRCKLAD-----FGMARQLGANMTVVGTDAYMAPELMFDNPYGTSADMFSFGIVLWETIYRQ 234          
BLAST of jgi.p|Trimin1|135391 vs. uniprot
Match: A0A7S2SRX7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SRX7_9STRA)

HSP 1 Score: 195 bits (495), Expect = 2.350e-59
Identity = 108/229 (47.16%), Postives = 148/229 (64.63%), Query Frame = 1
Query:    1 DILPAFDEADLYLSLSDIILGAQIGQGAFSKVYVGRYQGELVAVKKQKRADDELETYLLRELAVLKHFQHENMIRYVGGTQVCQPDGTA------------HVYIVTELAEHGDVLALLL-CGAAIGWRLRASILLDATRALEYLHGKRLIHRDIKSANLLLDRNFNCKLAGEFVSYFGMARPLGLN--MTIVGTDAYIAPELMFDEPYNTAADMFSLGVVAWESIYRK 642
            + +P+F+++D  L LSD+ +G  +G+G FSKVYVGRY GE+VAVK  +R  + LETY+LRELAVL +  HE M+ Y+G      P                 ++IVTELAE GD+ +LLL     +GW+    ++L+A   L YLH + +IHRD+K +NLLLDRN+  K+A      FG+AR +  N  M+I GTD Y+APEL+FDE Y+TAADMFSL +V  E + RK
Sbjct:    6 ETIPSFEDSDYSLDLSDVEIGPLLGEGMFSKVYVGRYFGEVVAVKIMEREQERLETYVLRELAVLNYIDHERMLGYIGACNKVNPRSRFAGSEGLDAAPPHSLFIVTELAEGGDLHSLLLKTDQELGWKFLTRLVLEAVEGLRYLHERCIIHRDVKPSNLLLDRNWRIKIAD-----FGLAREVAENGRMSICGTDEYMAPELLFDEAYDTAADMFSLAMVLVEVLCRK 229          
BLAST of jgi.p|Trimin1|135391 vs. uniprot
Match: D7G911_ECTSI (LISK family protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G911_ECTSI)

HSP 1 Score: 206 bits (525), Expect = 3.700e-59
Identity = 112/217 (51.61%), Postives = 149/217 (68.66%), Query Frame = 1
Query:    7 LPAFDEADLYLSLSDIILGAQIGQGAFSKVYVGRYQGELVAVKKQKRADDELETYLLRELAVLKHFQHENMIRYVGGTQV-CQPDGTAH-VYIVTELAEHGDVLALLL-CGAAIGWRLRASILLDATRALEYLHGKRLIHRDIKSANLLLDRNFNCKLAGEFVSYFGMARPLGLN--MTIVGTDAYIAPELMFDEPYNTAADMFSLGVVAWESIYRK 642
            LP F+E+D Y+    + +G  +G+GAFS VY+G+Y G++VAVKKQ R   +LE YLLREL+VLK+ +H+NM+ Y+G   V  +  G  H VYI+TE A+ GD+L LLL     +GWR R  I  +   ALEYLH ++LIHRDIKS+N LLD +++CKL     S FGMAR +  N  MTI GTD Y+APE++FDE ++  ADMFS G+V  E I RK
Sbjct:    9 LPDFEESDFYVEQEQVTIGPAVGEGAFSTVYIGKYFGDVVAVKKQTRQGRDLEKYLLRELSVLKYIRHQNMLEYIGAYNVIAKSRGQLHAVYIITEYAQGGDLLKLLLRTETPLGWRFRIQIAKEGAEALEYLHSQQLIHRDIKSSNFLLDGDWHCKL-----SDFGMAREVSSNGKMTICGTDEYMAPEMLFDESFSYPADMFSFGMVLLELITRK 220          
BLAST of jgi.p|Trimin1|135391 vs. uniprot
Match: A0A067C1S8_SAPPC (TKL/LISK/LISK-DD1 protein kinase n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C1S8_SAPPC)

HSP 1 Score: 165 bits (417), Expect = 1.080e-44
Identity = 101/216 (46.76%), Postives = 127/216 (58.80%), Query Frame = 1
Query:   10 PAFDEADLYLSLSDIILGAQIGQGAFSKVYVGRYQGELVAVKKQKRADDELETYLLRELAVLKHFQHENMIRYVGGTQVCQPDGTAHVYIVTELAEHGDVLALLLCGAAIGWRLRASILLDATRALEYLHGKRLIHRDIKSANLLLDRNFNCKLAGEFVSYFGMARPLGLN--------MTIVGTDAYIAPELMFDEPYNTAADMFSLGVVAWESI 633
            P   E    L    + LG  IG GAFSKV+ G Y G  VA+K+QKR D ++  Y+ RE+A+L+  +H  ++R+VG  QV QPD    V+IVTE  + GDV  LL   A + W  R  I LDA  AL YLH    IHRDIK+ANLLLD +  CKL       FG AR   ++        M++ GTDAY+APE+ FDE Y   AD+FSLGVV  E I
Sbjct:   23 PENQETATDLHAKRLALGPLIGSGAFSKVFAGAYDGAPVAIKRQKR-DPQINDYIAREIAILRQLEHPRLLRFVG--QVNQPD---EVWIVTEYLKGGDVSKLLKKAAPVTWYQRVQIALDAAEALAYLHDHGFIHRDIKAANLLLDDDRRCKLCD-----FGFAREAQVDTSTKPRRRMSLCGTDAYMAPEIHFDEAYGEHADIFSLGVVIMELI 227          
BLAST of jgi.p|Trimin1|135391 vs. uniprot
Match: A0A7S2WAU8_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WAU8_9STRA)

HSP 1 Score: 162 bits (409), Expect = 1.690e-43
Identity = 92/215 (42.79%), Postives = 123/215 (57.21%), Query Frame = 1
Query:   16 FDEADLYLSLSDIILGAQIGQGAFSKVYVGRYQGELVAVKKQKRADDELETYLLRELAVLKHFQHENMIRYVGGTQVCQPDGTAHVYIVTELAEHGDVLALLLCGAAIGWRLRASILLDATRALEYLHGKRLIHRDIKSANLLLDRNFNCKLAGEFVSYFGMARPL------GLNMTIVGTDAYIAPELMFDEPYNTAADMFSLGVVAWESIYRK 642
            F++ D  L    I LG  +G+GAFS VY   Y G  VA+K+QK  D  LE+Y+L+ELA+L+   H  ++ Y+G  +V     +  +YI TE    GD+   L     IGW+LR SI +D    L YLH + LIHRDIK+ N+LLD NFN KL       FG AR        G  MT+ GTD ++APE++F   YN  AD+F  G++  E I RK
Sbjct:   15 FEDEDFSLDEKKIKLGDALGRGAFSTVYKANYDGLPVAIKEQKVQDAHLESYILKELAILRRCNHPKLVAYIGACKV----KSDVIYIATEYCSGGDLRRFLQTNHIIGWKLRVSIAVDVAEGLAYLHDRSLIHRDIKTENVLLDPNFNAKLCD-----FGFARVAETKTDQGRPMTMCGTDEFMAPEVIFGMEYNEKADIFGFGIILAEMISRK 220          
BLAST of jgi.p|Trimin1|135391 vs. uniprot
Match: A0A7S2G8Z1_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G8Z1_9STRA)

HSP 1 Score: 160 bits (404), Expect = 5.350e-43
Identity = 84/207 (40.58%), Postives = 128/207 (61.84%), Query Frame = 1
Query:   34 YLSLSDIILGAQIGQGAFSKVYVGRYQGELVAVKKQKRADDELETYLLRELAVLKHFQHENMIRYVGGTQVCQPDGTAHVYIVTELAEHGDVLALLLCGAAIGWRLRASILLDATRALEYLHGKRLIHRDIKSANLLLDRNFNCKLAGEFVSYFGMARPL----GLNMTIVGTDAYIAPELMFDEPYNTAADMFSLGVVAWESIYRK 642
            + S+ +I +G +IGQG FS VY GR+ G  V+VKKQ R+ +EL+ YL RE+ +L+   H N+IR++G   V        ++++TE A  G++ ++L     IG + R +I     +AL+YLH  + +HRD+KS N+L+D NF  +LA      FGMAR +      +MTI GTD Y+APEL+FDE Y    D+++ G+V  E + R+
Sbjct:   28 FQSIQEIEIGPEIGQGQFSTVYAGRWNGVFVSVKKQSRSLEELDEYLRREIEILRTMTHPNVIRFIGADDVSISHNEWDLFVITEYAPGGELSSILQSEIEIGMKFRVNIAFQLAQALDYLHSHKCLHRDVKSENVLIDGNFRPQLAD-----FGMARFVESEDAQHMTICGTDEYMAPELLFDEDYGRPVDVYAFGMVLLEVLARR 229          
BLAST of jgi.p|Trimin1|135391 vs. uniprot
Match: A0A3R7XCZ5_9PROT (Non-specific serine/threonine protein kinase (Fragment) n=1 Tax=Alphaproteobacteria bacterium TMED89 TaxID=1986647 RepID=A0A3R7XCZ5_9PROT)

HSP 1 Score: 150 bits (380), Expect = 6.050e-43
Identity = 85/161 (52.80%), Postives = 104/161 (64.60%), Query Frame = 1
Query:  130 VKKQKRADDELETYLLRELAVLKHFQHENMIRYVGGTQVCQPDGTAH-VYIVTELAEHGDVLALLLCGAAIGWRLRASILLDATRALEYLHGKRLIHRDIKSANLLLDRNFNCKLAGEFVSYFGMAR---PLGLNMTIVGTDAYIAPELMFDEPYNTAADM 600
            +KKQ R  +ELET+LLRELAVLK  +HENM+ Y+G      P G  H VYIVTELA  GD+L+LLL   A+GW+  A I   A   LE+LH   LIHRD+K++NLLLD  + CKLA      FG+ R   P    M+  GTD Y+APEL FDEPY  A D+
Sbjct:    1 MKKQVREQEELETHLLRELAVLKCMKHENMLEYLGAYNEVDPAGATHAVYIVTELAAGGDLLSLLLSEHALGWKFLAKICRGAAAGLEHLHSHNLIHRDVKASNLLLDARWACKLAD-----FGLCREAAPDDEQMSTCGTDEYMAPELHFDEPYGFAVDV 156          
BLAST of jgi.p|Trimin1|135391 vs. uniprot
Match: A0A2R5G0L1_9STRA (RasGEF domain-containing serine/threonine-protein kinase X n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G0L1_9STRA)

HSP 1 Score: 161 bits (408), Expect = 4.050e-42
Identity = 91/216 (42.13%), Postives = 128/216 (59.26%), Query Frame = 1
Query:   16 FDEADLYLSLSDIILGAQIGQGAFSKVYVGRYQGELVAVKKQKRADDELETYLLRELAVLKHFQHENMIRYVGGTQVCQPDGTAHVYIVTELAEHGDVLALLLCGAAIGWRLRASILLDATRALEYLHGKRLIHRDIKSANLLLDRNFNCKLAGEFVSYFGMARPL-------GLNMTIVGTDAYIAPELMFDEPYNTAADMFSLGVVAWESIYRK 642
            F + D  L  S + L   +G+GAFS VY   Y G +VA+KKQK AD +LE Y+ +ELA+L+   H  +++Y+G  +V +      +YI TE    GD+  LL    A+GW+LRA+IL     ALEY+H + LIHRD+K+ N+LLD   N KL       FG AR         G  MT+ GTD ++APE++F   Y+T AD+F  G++  E+I RK
Sbjct:   15 FGDNDFDLDKSKVKLLDVLGRGAFSTVYKAEYTGLVVAIKKQKLADPDLERYIRKELAILRRCNHPGLVKYIGACKVDEKT----IYIATEYCRGGDLRRLLQSSRALGWKLRANILRGVADALEYMHDRGLIHRDVKTENVLLDETLNPKLCD-----FGFARDAAPGTDARGRVMTMCGTDEFMAPEVIFGMAYDTKADVFGFGIIIAETIARK 221          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|135391 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CNH5_9STRA3.760e-151100.00Kinase-like domain-containing protein (Fragment) n... [more]
A0A835ZKA0_9STRA3.620e-9369.77LISK family protein kinase n=1 Tax=Tribonema minus... [more]
A0A6H5JRN5_9PHAE1.030e-8364.62Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2SRX7_9STRA2.350e-5947.16Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
D7G911_ECTSI3.700e-5951.61LISK family protein kinase n=1 Tax=Ectocarpus sili... [more]
A0A067C1S8_SAPPC1.080e-4446.76TKL/LISK/LISK-DD1 protein kinase n=2 Tax=Saprolegn... [more]
A0A7S2WAU8_9STRA1.690e-4342.79Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A7S2G8Z1_9STRA5.350e-4340.58Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A3R7XCZ5_9PROT6.050e-4352.80Non-specific serine/threonine protein kinase (Frag... [more]
A0A2R5G0L1_9STRA4.050e-4242.13RasGEF domain-containing serine/threonine-protein ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_138contigContig_138:346859..348791 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|135391|gw1.138.21.1
BRITEko00000,ko00001,ko00002,ko01000,ko01001
KEGG ModuleM00686,M00688,M00689
KEGG Pathwayko04010,ko04013,ko04016,ko04064,ko04140,ko04152,ko04214,ko04310,ko04380,ko04520,ko04620,ko04621,ko04622,ko04624,ko04657,ko04660,ko04668,ko05140,ko05145,ko05162,ko05168,ko05169,ko05418,map04010,map04013,map04016,map04064,map04140,map04152,map04214,map04310,map04380,map04520,map04620,map04621,map04622,map04624,map04657,map04660,map04668,map05140,map05145,map05162,map05168,map05169,map05418
KEGG koko:K04427,ko:K20717,ko:K20718
EC2.7.11.1,2.7.11.25
Descriptionprotein kinase activity
COG categoryKLT
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0515@1|root,KOG0192@2759|Eukaryota
Evalue6.07e-60
Seed ortholog2880.D7G911
Hectar predicted targeting categoryother localisation
TranscriptId135713
TrackFilteredModels1
ProteinId135391
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|135391gene_13996Tribonema minus UTEX_B_3156 geneContig_138 346859..348791 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13996_1exon_13996_1Tribonema minus UTEX_B_3156 exonContig_138 346859..347082 +
exon_13996_2exon_13996_2Tribonema minus UTEX_B_3156 exonContig_138 347866..348131 +
exon_13996_3exon_13996_3Tribonema minus UTEX_B_3156 exonContig_138 348640..348791 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13996CDS_13996Tribonema minus UTEX_B_3156 CDSContig_138 346859..347082 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|135391Trimin1|135391|gw1.138.21.1Tribonema minus UTEX_B_3156 polypeptideContig_138 346859..348791 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13996 ID=mRNA_13996|Name=jgi.p|Trimin1|135391|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=642bp|location=Sequence derived from alignment at Contig_138:346859..348791+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GACATATTGCCAGCCTTTGACGAAGCTGACCTGTACCTGAGCCTGAGCGA
TATAATCCTCGGCGCTCAGATAGGGCAGGGCGCTTTCAGCAAGGTGTACG
TTGGCAGATATCAGGGCGAGCTTGTGGCGGTCAAGAAGCAGAAGCGCGCT
GACGATGAGCTGGAGACTTACCTGCTAAGGGAGCTGGCGGTGCTGAAACA
CTTTCAGCATGAGAACATGATCAGATACGTGGGCGGCACGCAAGTCTGCC
AGCCCGACGGCACCGCGCACGTGTACATTGTCACGGAGCTGGCGGAGCAC
GGAGATGTGCTGGCGCTGCTGCTGTGCGGCGCCGCCATCGGGTGGCGGCT
GCGCGCGAGCATCCTGCTCGATGCGACGCGCGCGCTGGAGTACCTGCACG
GCAAGCGCCTCATTCACCGCGACATCAAGTCCGCCAACCTGCTGCTGGAC
AGGAACTTCAACTGCAAGCTGGCAGGCGAGTTTGTCTCGTACTTTGGCAT
GGCGCGTCCGCTGGGACTGAACATGACTATTGTGGGGACGGACGCCTACA
TCGCGCCCGAGCTCATGTTTGACGAGCCCTACAACACCGCAGCGGACATG
TTCAGCCTGGGCGTGGTGGCCTGGGAGTCCATCTACAGGAAG
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protein sequence of jgi.p|Trimin1|135391

>Trimin1|135391|gw1.138.21.1 ID=Trimin1|135391|gw1.138.21.1|Name=jgi.p|Trimin1|135391|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=214bp
DILPAFDEADLYLSLSDIILGAQIGQGAFSKVYVGRYQGELVAVKKQKRA
DDELETYLLRELAVLKHFQHENMIRYVGGTQVCQPDGTAHVYIVTELAEH
GDVLALLLCGAAIGWRLRASILLDATRALEYLHGKRLIHRDIKSANLLLD
RNFNCKLAGEFVSYFGMARPLGLNMTIVGTDAYIAPELMFDEPYNTAADM
FSLGVVAWESIYRK
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mRNA from alignment at Contig_138:346859..348791+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13996 ID=mRNA_13996|Name=jgi.p|Trimin1|135391|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1933bp|location=Sequence derived from alignment at Contig_138:346859..348791+ (Tribonema minus UTEX_B_3156 )
GACATATTGCCAGCCTTTGACGAAGCTGACCTGTACCTGAGCCTGAGCGA TATAATCCTCGGCGCTCAGATAGGGCAGGGCGCTTTCAGCAAGGTGTACG TTGGCAGATATCAGGGCGAGCTTGTGGCGGTCAAGAAGCAGAAGCGCGCT GACGATGAGCTGGAGACTTACCTGCTAAGGGAGCTGGCGGTGCTGAAACA CTTTCAGCATGAGAACATGATCAGGTAGGCGCTTGGTGGTGCACATTCAC TAGACAACGCGTGCTGCCTACGCTGCATGCATGTAGTATCATGTAGGGAA GCAGCTGGCTGGACGCTGAGCCCATCAGGTGCCCCTTGTCTGGCTGCAGA CAGGCACCAAACGGCTCTGTTTGTGAACAAAGTATTGTCCTACTTCACAG TACGCTGCTGGGTGCAAGTCGCTATTCAAGCTGCCCTTGTCAGGCTGCCA ATGCGCCATGCGCCAGGTGTATGAACTGCAGGTGTTGCAGAATCGTTACG CAGTGCTGTGTCAGCGGTGATATTACAAGTGCAACGCCCGCAACGCGTCA ACCACTCTGGCATCGCTCGCATGACTAGAGCTGGTGGGGCACATCACCGT ACAGGCATGACCATGGTGCACGCGAATGGAATATGGCTGCACAGGAACTC TGCACGACAGACACAACAAATACAGCAGCATTTTTGTCATGCCTAGCATG TCGGCGATACCTGCATGTGGCGTGCGGGCAGGCATTCCCGGTCAACTTTG TCACCTGCTGCTGCCGGCAACGCATCAGGGACGAGGTTGGCACTAGGTCC TTCCTGCTCCAGTGCGCTCAGCGACACGCTCTTTTGACACACAAACACGA GAACGGCATAAAAACCCAGCAAAAGCGCACACGCTGACCGCCTCCGAGCT GGTACAATCGCCGCTGCAATGCGACACTGTAGCACGCCACCGACTCCATC TGCGCAACCCAACACACAGGCTGCAACCCCTCACCGCCCCCGTCCGCCGC TCCCCAGATACGTGGGCGGCACGCAAGTCTGCCAGCCCGACGGCACCGCG CACGTGTACATTGTCACGGAGCTGGCGGAGCACGGAGATGTGCTGGCGCT GCTGCTGTGCGGCGCCGCCATCGGGTGGCGGCTGCGCGCGAGCATCCTGC TCGATGCGACGCGCGCGCTGGAGTACCTGCACGGCAAGCGCCTCATTCAC CGCGACATCAAGTCCGCCAACCTGCTGCTGGACAGGAACTTCAACTGCAA GCTGGCAGGCGAGTTTGTCTCGTGTGTTGTGTAGCGTGCGCGCTGCTGCT GGTGGCAAGTGTGCACTGCTGTGGAGTGTCATTTCATTTGCCGACAGCAA CGTGAAGTTGCAGCGCACGCGGCGCACGACGCCAGTGTATGTGTTCAAAG CTTGCTGTCACAATGTGCACACCGCAATGTGCACACATGATGCAATGGAG CAATGGCTTGGCCATATGCATCATGCATGTACAGGCTTGTCGCCAAGCCG TTCCTCAAGTGACCACAGCCGAAACCAGTACAGTGCAGGGCTCAACTGCA GCCACAGGCTTTACGCCGCACCAAACACGTTGTCGAGGGCCACAACAACC ATTTTACTCCACACTGTCCAGTTTTCAAGGCAGCAGTGCTCATCTCCACG GCAGGCGCATTCAACGTGCCCACTTCCTTCTTGCCAACGCACGCTAGTTC ACAACGTTGATTCACAGAACTTGACCCTCTTGCGCGCTCAAGCCATCGCC TGCATCTCCTATTCACATGCAATGCGCGCAGACTTTGGCATGGCGCGTCC GCTGGGACTGAACATGACTATTGTGGGGACGGACGCCTACATCGCGCCCG AGCTCATGTTTGACGAGCCCTACAACACCGCAGCGGACATGTTCAGCCTG GGCGTGGTGGCCTGGGAGTCCATCTACAGGAAG
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Coding sequence (CDS) from alignment at Contig_138:346859..348791+

>mRNA_13996 ID=mRNA_13996|Name=jgi.p|Trimin1|135391|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=642bp|location=Sequence derived from alignment at Contig_138:346859..348791+ (Tribonema minus UTEX_B_3156 )
GACATATTGCCAGCCTTTGACGAAGCTGACCTGTACCTGAGCCTGAGCGA
TATAATCCTCGGCGCTCAGATAGGGCAGGGCGCTTTCAGCAAGGTGTACG
TTGGCAGATATCAGGGCGAGCTTGTGGCGGTCAAGAAGCAGAAGCGCGCT
GACGATGAGCTGGAGACTTACCTGCTAAGGGAGCTGGCGGTGCTGAAACA
CTTTCAGCATGAGAACATGATCAGATACGTGGGCGGCACGCAAGTCTGCC
AGCCCGACGGCACCGCGCACGTGTACATTGTCACGGAGCTGGCGGAGCAC
GGAGATGTGCTGGCGCTGCTGCTGTGCGGCGCCGCCATCGGGTGGCGGCT
GCGCGCGAGCATCCTGCTCGATGCGACGCGCGCGCTGGAGTACCTGCACG
GCAAGCGCCTCATTCACCGCGACATCAAGTCCGCCAACCTGCTGCTGGAC
AGGAACTTCAACTGCAAGCTGGCAGGCGAGTTTGTCTCGTACTTTGGCAT
GGCGCGTCCGCTGGGACTGAACATGACTATTGTGGGGACGGACGCCTACA
TCGCGCCCGAGCTCATGTTTGACGAGCCCTACAACACCGCAGCGGACATG
TTCAGCCTGGGCGTGGTGGCCTGGGAGTCCATCTACAGGAAG
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