mRNA_13994 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|176518
Unique NamemRNA_13994
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|176518 vs. uniprot
Match: A0A836CLJ6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLJ6_9STRA)

HSP 1 Score: 229 bits (584), Expect = 3.570e-66
Identity = 472/472 (100.00%), Postives = 472/472 (100.00%), Query Frame = 1 
Query:    1 MRVDESDLSSVSALSLGSSTTHAQGRELTAAPHAALALPTESPRPSLSIGKLALLTELKVHSCNTLTGLPDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLRVSGRCLRSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVHLDVHFHNGMESLPDSIGALSRLQELQVSTAVAGLXXXXXXXTALTTLNLHHSGFXXXXXXXXXXXXXXRLDVWLCQRLTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTELSVCETGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVDELPLLSIINDAGSESCNFFT 1416
            MRVDESDLSSVSALSLGSSTTHAQGRELTAAPHAALALPTESPRPSLSIGKLALLTELKVHSCNTLTGLPDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLRVSGRCLRSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVHLDVHFHNGMESLPDSIGALSRLQELQVSTAVAGLXXXXXXXTALTTLNLHHSGFXXXXXXXXXXXXXXRLDVWLCQRLTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTELSVCETGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVDELPLLSIINDAGSESCNFFT
Sbjct:    1 MRVDESDLSSVSALSLGSSTTHAQGRELTAAPHAALALPTESPRPSLSIGKLALLTELKVHSCNTLTGLPDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLRVSGRCLRSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVHLDVHFHNGMESLPDSIGALSRLQELQVSTAVAGLXXXXXXXTALTTLNLHHSGFXXXXXXXXXXXXXXRLDVWLCQRLTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTELSVCETGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVDELPLLSIINDAGSESCNFFT 472
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BLAST of jgi.p|Trimin1|176518 vs. uniprot
Match: A0A835Z9U5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9U5_9STRA)

HSP 1 Score: 117 bits (293), Expect = 7.090e-25
Identity = 66/72 (91.67%), Postives = 68/72 (94.44%), Query Frame = 1 
Query:    1 MRVDESDLSSVSALSLGSSTTHAQGRELTAAPHAALALPTESPRPSLSIGKLALLTELKVHSCNTLTGLPDS 216
            MRVDESDLSSVSALSLGSSTTHAQG ELTAAP+AALALPTES RPSLSI KLALLTELK+H CNTLTGLPDS
Sbjct:    1 MRVDESDLSSVSALSLGSSTTHAQGGELTAAPNAALALPTESLRPSLSIRKLALLTELKLHRCNTLTGLPDS 72
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|176518 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A836CLJ6_9STRA3.570e-66100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z9U5_9STRA7.090e-2591.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_138contigContig_138:338557..339975 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|176518|e_gw1.138.26.1
Hectar predicted targeting categoryother localisation
TranscriptId176840
TrackFilteredModels1
ProteinId176518
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|176518gene_13994Tribonema minus UTEX_B_3156 geneContig_138 338557..339975 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13994_1exon_13994_1Tribonema minus UTEX_B_3156 exonContig_138 338557..339975 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13994CDS_13994Tribonema minus UTEX_B_3156 CDSContig_138 338557..339975 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|176518Trimin1|176518|e_gw1.138.26.1Tribonema minus UTEX_B_3156 polypeptideContig_138 338557..339975 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13994 ID=mRNA_13994|Name=jgi.p|Trimin1|176518|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1419bp|location=Sequence derived from alignment at Contig_138:338557..339975+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTGTCGACGAGTCCGATCTCTCCAGCGTTTCGGCGCTGTCCCTGGG
CTCCTCAACTACGCACGCACAGGGACGAGAGCTGACGGCAGCCCCACATG
CGGCACTCGCATTGCCGACCGAATCGCCGCGCCCGTCCCTCAGCATCGGC
AAGCTGGCACTGCTGACGGAGCTTAAAGTCCACAGCTGCAACACCCTCAC
CGGCCTGCCAGACAGCATTGGCGAGTTGACATCGCTACGCACGCTGGCAG
TGCGGAACTGCGCCAGCCTCAGGAGCCTGCCCGAGAGCATCGGCGACCTT
GCAGCGCTGACAACGCTCAACCTGGGCGACTGCCTCCAACTCAGCAGCCT
GCCCGAGCGCATCGGCGACTTGAAGGCGCTGTCTACACTTGACCTGTTCT
TCTGCTGTGCGCTGCAGAGGCTGCCCGACCGCATTGGCGATCTGGCAGCG
CTCACCACGCTCCACGTGAGCTTCTGCGCTGCGCTCACGGAGCTTCCAGA
GCGCATCGGCGACCTTGCAGCGCTGACGGACCTCACTATGCACAGCTGCG
ACGCCCTGGTGACCATTCCGGCGCGCATCGGCCAGCTCGCAGCCTTAACG
TTGCTGCGCGTGTCCGGCAGGTGCCTGCGGAGCCTTCCAGACAGCATCTG
CGGCATGCCAGCGCTTACAGAGCTTCACATCAGCTCCCGCGCCAGTATGG
CGCGTTTGCCGCACCGCATTGGCGACCTACCCGCACTGGTGCACCTGGAC
GTCCACTTCCACAATGGCATGGAGAGCCTGCCCGACAGCATCGGAGCGCT
GTCGCGATTGCAGGAGCTTCAAGTCAGTACCGCAGTCGCAGGCCTGCCGG
ACAGCATCGGTCGACTCACAGCGCTCACGACGCTCAATCTGCACCACAGC
GGCTTCGCCTCGCTGCCCGAGAGCGTTGGCGCTCTCGCCGCGCTGACGCG
GCTGGACGTGTGGCTGTGCCAGCGGCTGACGCGCCTGCCGGACTCTATAG
GCAGCCTGACAGCGCTCCGCAGGCTCGCTCTCCGCCACTGCAGAGCGCTG
ACGTGCCTGCCTAACACCATCGCCGGCCTGGCGGCGCTGCAGTCGCTGTG
CCTGAGGGGGTGCGTCGCGCTGGCGTGCCTGCCGGACACCATAGGAGCGC
TGCAGGCGCTGACAGAGCTCAGCGTCTGCGAAACGGGCCTCACAGCGCTG
CCGGGCAGCGTCGGTGGCCTGCGGGCGTTGTGCAAGCTCGACGTGAGCTG
GTGCAAGTGGATGGTGGCATTGCCAGTTAGTATCAGTGAGTTGGCAACGC
TCAAGACGCTAGACATTAGCAAGAGCGGCATCCATGGCGTGCCTGAGGGT
GTGGACGAGCTGCCGCTGCTGAGCATCATCAATGATGCGGGCAGCGAGAG
CTGTAACTTCTTCACTTAG
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protein sequence of jgi.p|Trimin1|176518

>Trimin1|176518|e_gw1.138.26.1 ID=Trimin1|176518|e_gw1.138.26.1|Name=jgi.p|Trimin1|176518|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=473bp
MRVDESDLSSVSALSLGSSTTHAQGRELTAAPHAALALPTESPRPSLSIG
KLALLTELKVHSCNTLTGLPDSIGELTSLRTLAVRNCASLRSLPESIGDL
AALTTLNLGDCLQLSSLPERIGDLKALSTLDLFFCCALQRLPDRIGDLAA
LTTLHVSFCAALTELPERIGDLAALTDLTMHSCDALVTIPARIGQLAALT
LLRVSGRCLRSLPDSICGMPALTELHISSRASMARLPHRIGDLPALVHLD
VHFHNGMESLPDSIGALSRLQELQVSTAVAGLPDSIGRLTALTTLNLHHS
GFASLPESVGALAALTRLDVWLCQRLTRLPDSIGSLTALRRLALRHCRAL
TCLPNTIAGLAALQSLCLRGCVALACLPDTIGALQALTELSVCETGLTAL
PGSVGGLRALCKLDVSWCKWMVALPVSISELATLKTLDISKSGIHGVPEG
VDELPLLSIINDAGSESCNFFT*
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mRNA from alignment at Contig_138:338557..339975+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13994 ID=mRNA_13994|Name=jgi.p|Trimin1|176518|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1419bp|location=Sequence derived from alignment at Contig_138:338557..339975+ (Tribonema minus UTEX_B_3156 )
ATGCGTGTCGACGAGTCCGATCTCTCCAGCGTTTCGGCGCTGTCCCTGGG
CTCCTCAACTACGCACGCACAGGGACGAGAGCTGACGGCAGCCCCACATG
CGGCACTCGCATTGCCGACCGAATCGCCGCGCCCGTCCCTCAGCATCGGC
AAGCTGGCACTGCTGACGGAGCTTAAAGTCCACAGCTGCAACACCCTCAC
CGGCCTGCCAGACAGCATTGGCGAGTTGACATCGCTACGCACGCTGGCAG
TGCGGAACTGCGCCAGCCTCAGGAGCCTGCCCGAGAGCATCGGCGACCTT
GCAGCGCTGACAACGCTCAACCTGGGCGACTGCCTCCAACTCAGCAGCCT
GCCCGAGCGCATCGGCGACTTGAAGGCGCTGTCTACACTTGACCTGTTCT
TCTGCTGTGCGCTGCAGAGGCTGCCCGACCGCATTGGCGATCTGGCAGCG
CTCACCACGCTCCACGTGAGCTTCTGCGCTGCGCTCACGGAGCTTCCAGA
GCGCATCGGCGACCTTGCAGCGCTGACGGACCTCACTATGCACAGCTGCG
ACGCCCTGGTGACCATTCCGGCGCGCATCGGCCAGCTCGCAGCCTTAACG
TTGCTGCGCGTGTCCGGCAGGTGCCTGCGGAGCCTTCCAGACAGCATCTG
CGGCATGCCAGCGCTTACAGAGCTTCACATCAGCTCCCGCGCCAGTATGG
CGCGTTTGCCGCACCGCATTGGCGACCTACCCGCACTGGTGCACCTGGAC
GTCCACTTCCACAATGGCATGGAGAGCCTGCCCGACAGCATCGGAGCGCT
GTCGCGATTGCAGGAGCTTCAAGTCAGTACCGCAGTCGCAGGCCTGCCGG
ACAGCATCGGTCGACTCACAGCGCTCACGACGCTCAATCTGCACCACAGC
GGCTTCGCCTCGCTGCCCGAGAGCGTTGGCGCTCTCGCCGCGCTGACGCG
GCTGGACGTGTGGCTGTGCCAGCGGCTGACGCGCCTGCCGGACTCTATAG
GCAGCCTGACAGCGCTCCGCAGGCTCGCTCTCCGCCACTGCAGAGCGCTG
ACGTGCCTGCCTAACACCATCGCCGGCCTGGCGGCGCTGCAGTCGCTGTG
CCTGAGGGGGTGCGTCGCGCTGGCGTGCCTGCCGGACACCATAGGAGCGC
TGCAGGCGCTGACAGAGCTCAGCGTCTGCGAAACGGGCCTCACAGCGCTG
CCGGGCAGCGTCGGTGGCCTGCGGGCGTTGTGCAAGCTCGACGTGAGCTG
GTGCAAGTGGATGGTGGCATTGCCAGTTAGTATCAGTGAGTTGGCAACGC
TCAAGACGCTAGACATTAGCAAGAGCGGCATCCATGGCGTGCCTGAGGGT
GTGGACGAGCTGCCGCTGCTGAGCATCATCAATGATGCGGGCAGCGAGAG
CTGTAACTTCTTCACTTAG
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Coding sequence (CDS) from alignment at Contig_138:338557..339975+

>mRNA_13994 ID=mRNA_13994|Name=jgi.p|Trimin1|176518|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1419bp|location=Sequence derived from alignment at Contig_138:338557..339975+ (Tribonema minus UTEX_B_3156 )
ATGCGTGTCGACGAGTCCGATCTCTCCAGCGTTTCGGCGCTGTCCCTGGG
CTCCTCAACTACGCACGCACAGGGACGAGAGCTGACGGCAGCCCCACATG
CGGCACTCGCATTGCCGACCGAATCGCCGCGCCCGTCCCTCAGCATCGGC
AAGCTGGCACTGCTGACGGAGCTTAAAGTCCACAGCTGCAACACCCTCAC
CGGCCTGCCAGACAGCATTGGCGAGTTGACATCGCTACGCACGCTGGCAG
TGCGGAACTGCGCCAGCCTCAGGAGCCTGCCCGAGAGCATCGGCGACCTT
GCAGCGCTGACAACGCTCAACCTGGGCGACTGCCTCCAACTCAGCAGCCT
GCCCGAGCGCATCGGCGACTTGAAGGCGCTGTCTACACTTGACCTGTTCT
TCTGCTGTGCGCTGCAGAGGCTGCCCGACCGCATTGGCGATCTGGCAGCG
CTCACCACGCTCCACGTGAGCTTCTGCGCTGCGCTCACGGAGCTTCCAGA
GCGCATCGGCGACCTTGCAGCGCTGACGGACCTCACTATGCACAGCTGCG
ACGCCCTGGTGACCATTCCGGCGCGCATCGGCCAGCTCGCAGCCTTAACG
TTGCTGCGCGTGTCCGGCAGGTGCCTGCGGAGCCTTCCAGACAGCATCTG
CGGCATGCCAGCGCTTACAGAGCTTCACATCAGCTCCCGCGCCAGTATGG
CGCGTTTGCCGCACCGCATTGGCGACCTACCCGCACTGGTGCACCTGGAC
GTCCACTTCCACAATGGCATGGAGAGCCTGCCCGACAGCATCGGAGCGCT
GTCGCGATTGCAGGAGCTTCAAGTCAGTACCGCAGTCGCAGGCCTGCCGG
ACAGCATCGGTCGACTCACAGCGCTCACGACGCTCAATCTGCACCACAGC
GGCTTCGCCTCGCTGCCCGAGAGCGTTGGCGCTCTCGCCGCGCTGACGCG
GCTGGACGTGTGGCTGTGCCAGCGGCTGACGCGCCTGCCGGACTCTATAG
GCAGCCTGACAGCGCTCCGCAGGCTCGCTCTCCGCCACTGCAGAGCGCTG
ACGTGCCTGCCTAACACCATCGCCGGCCTGGCGGCGCTGCAGTCGCTGTG
CCTGAGGGGGTGCGTCGCGCTGGCGTGCCTGCCGGACACCATAGGAGCGC
TGCAGGCGCTGACAGAGCTCAGCGTCTGCGAAACGGGCCTCACAGCGCTG
CCGGGCAGCGTCGGTGGCCTGCGGGCGTTGTGCAAGCTCGACGTGAGCTG
GTGCAAGTGGATGGTGGCATTGCCAGTTAGTATCAGTGAGTTGGCAACGC
TCAAGACGCTAGACATTAGCAAGAGCGGCATCCATGGCGTGCCTGAGGGT
GTGGACGAGCTGCCGCTGCTGAGCATCATCAATGATGCGGGCAGCGAGAG
CTGTAACTTCTTCACTTAG
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