mRNA_13993 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|132449
Unique NamemRNA_13993
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|132449 vs. uniprot
Match: A0A836CLN4_9STRA (C2 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLN4_9STRA)

HSP 1 Score: 310 bits (793), Expect = 7.620e-107
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 1 
Query:    1 QVLVEVLAARGLRGTDLQGYANPYCIIYLKATARRRRRQRPRGATYFCEKTVCPKWVDQRLVFTVPAAAARSQRGYSLRVMILSRDFLRPNDLLGQAAVPLDLLLDQREHVGWFPLNQRASRLMALSQMDKPGGCGSVQLRLQWVHTKTALL 456
            QVLVEVLAARGLRGTDLQGYANPYCIIYLKATARRRRRQRPRGATYFCEKTVCPKWVDQRLVFTVPAAAARSQRGYSLRVMILSRDFLRPNDLLGQAAVPLDLLLDQREHVGWFPLNQRASRLMALSQMDKPGGCGSVQLRLQWVHTKTALL
Sbjct:    1 QVLVEVLAARGLRGTDLQGYANPYCIIYLKATARRRRRQRPRGATYFCEKTVCPKWVDQRLVFTVPAAAARSQRGYSLRVMILSRDFLRPNDLLGQAAVPLDLLLDQREHVGWFPLNQRASRLMALSQMDKPGGCGSVQLRLQWVHTKTALL 152
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BLAST of jgi.p|Trimin1|132449 vs. uniprot
Match: D7G8Y9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Y9_ECTSI)

HSP 1 Score: 172 bits (437), Expect = 5.450e-47
Identity = 90/159 (56.60%), Postives = 113/159 (71.07%), Query Frame = 1 
Query:    1 QVLVEVLAARGLRGTDLQGYANPYCIIYLK-------ATARRRRRQRPRGATYFCEKTVCPKWVDQRLVFTVPAAAARSQRGYSLRVMILSRDFLRPNDLLGQAAVPLDLLLDQREHVGWFPLNQRASRLMALSQMDKPGGCGSVQLRLQWVHTKTALL 456
            QV VEVLAA  LR T LQGY++PYC+ YLK       + +   R +  RG TYFCEKT+ P W  QR +F VP AA + +RG+ +RV++LSR+ +RPND LGQA VPL LL D+REHVGWFPLN+R+SRLM L+  DK  G  SV+LR+QWV +  ALL
Sbjct: 6045 QVFVEVLAATSLRPTGLQGYSDPYCVCYLKIPDSTGGSKSADDRFRGQRGETYFCEKTLNPTWSGQRFIFKVPPAAVQRKRGHGVRVLVLSRNLVRPNDFLGQADVPLSLLQDEREHVGWFPLNRRSSRLMHLAAGDKIAG--SVKLRVQWVFSLDALL 6201
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BLAST of jgi.p|Trimin1|132449 vs. uniprot
Match: A0A6H5KMI8_9PHAE (C2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMI8_9PHAE)

HSP 1 Score: 172 bits (435), Expect = 9.450e-47
Identity = 90/159 (56.60%), Postives = 113/159 (71.07%), Query Frame = 1 
Query:    1 QVLVEVLAARGLRGTDLQGYANPYCIIYLK-------ATARRRRRQRPRGATYFCEKTVCPKWVDQRLVFTVPAAAARSQRGYSLRVMILSRDFLRPNDLLGQAAVPLDLLLDQREHVGWFPLNQRASRLMALSQMDKPGGCGSVQLRLQWVHTKTALL 456
            QV VEVLAA  LR T LQGY++PYC+ YLK       + +   R +   G TYFCEKT+ PKW  QR +F VP AA + +RG+ +RV++LSR+ +RPND LGQA VPL LL D+REHVGWFPLN+R+SRLM L+  DK    GSV+LR+QWV +  ALL
Sbjct:  467 QVFVEVLAAASLRPTGLQGYSDPYCVCYLKVPDSTGGSKSADDRFRGQGGETYFCEKTLNPKWSGQRFIFKVPPAAVQRKRGHGVRVLVLSRNLVRPNDFLGQADVPLSLLQDEREHVGWFPLNRRSSRLMHLAAGDKI--TGSVKLRVQWVFSLEALL 623
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BLAST of jgi.p|Trimin1|132449 vs. uniprot
Match: A0A7S2UEQ3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UEQ3_9STRA)

HSP 1 Score: 116 bits (290), Expect = 3.080e-27
Identity = 65/156 (41.67%), Postives = 92/156 (58.97%), Query Frame = 1 
Query:    1 QVLVEVLAARGLRGTDLQGYANPYCIIYLKATARRRRRQRPRGA----TYFCEKTVCPKWVDQRLVFTVPAAAARSQRGYSLRVMILSRDFLRPNDLLGQAAVPLDLLLDQREHVGWFPLNQRASRLMALSQMDKPGGCGSVQLRLQWVHTKTALL 456
            QV++EVL   GL+   L G +NPYC + LK  ++ +R    + A    TY+ EKT+ PKW++Q  VF VP+ AA   RG+S++V + +   L     LGQA V L  L +QRE V W+PL  R      L +    GG GSV+LR+QW+++  ALL
Sbjct:  119 QVVIEVLECAGLKAVYLNGLSNPYCEVILKTRSQGKRNLFSKKAIKRKTYYVEKTLSPKWINQTFVFEVPSEAANVTRGHSIQVQLRNFGLLGKRAHLGQAEVHLRSLRNQRELVCWYPLRGRTGH-QELQKSSAEGGRGSVKLRVQWIYSVPALL 273
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BLAST of jgi.p|Trimin1|132449 vs. uniprot
Match: A0A482SPX2_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SPX2_9ARCH)

HSP 1 Score: 87.4 bits (215), Expect = 1.240e-17
Identity = 43/107 (40.19%), Postives = 64/107 (59.81%), Query Frame = 1 
Query:  133 TYFCEKTVCPKWVDQRLVFTVPAAAARSQRGYSLRVMILSRDFLRPNDLLGQAAVPLDLLLDQREHVGWFPLNQRASRLMALSQMDKPGGCGSVQLRLQWVHTKTAL 453
            TY C++T+ P+W+ QR  F VP AA    R YSLR+++ ++     +++L    VPL  L D++E  GWFPL    S L+      +P  CGS++LR+QWVH+   L
Sbjct:    5 TYVCDQTLEPQWLQQRFAFDVPQAAQSEYRHYSLRILVKAKSLTGVDNVLSILDVPLSCLRDEKEIEGWFPLRPSRSSLLV-----RPT-CGSIKLRVQWVHSPLGL 105
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|132449 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A836CLN4_9STRA7.620e-107100.00C2 domain-containing protein (Fragment) n=1 Tax=Tr... [more]
D7G8Y9_ECTSI5.450e-4756.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KMI8_9PHAE9.450e-4756.60C2 domain-containing protein n=1 Tax=Ectocarpus sp... [more]
A0A7S2UEQ3_9STRA3.080e-2741.67Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A482SPX2_9ARCH1.240e-1740.19Uncharacterized protein (Fragment) n=1 Tax=archaeo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_138contigContig_138:316161..317981 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|132449|gw1.138.13.1
Descriptionregulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization
COG categoryU
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5043@1|root,KOG1809@2759|Eukaryota
Evalue8.94e-48
Seed ortholog2880.D7G8Y9
Hectar predicted targeting categoryother localisation
TranscriptId132771
TrackFilteredModels1
ProteinId132449
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|132449gene_13993Tribonema minus UTEX_B_3156 geneContig_138 316161..317981 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13993_1exon_13993_1Tribonema minus UTEX_B_3156 exonContig_138 316161..316254 +
exon_13993_2exon_13993_2Tribonema minus UTEX_B_3156 exonContig_138 317620..317981 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13993CDS_13993Tribonema minus UTEX_B_3156 CDSContig_138 316161..316254 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|132449Trimin1|132449|gw1.138.13.1Tribonema minus UTEX_B_3156 polypeptideContig_138 316161..317981 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13993 ID=mRNA_13993|Name=jgi.p|Trimin1|132449|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=456bp|location=Sequence derived from alignment at Contig_138:316161..317981+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAGGTGCTTGTGGAAGTGCTGGCGGCACGTGGCTTGCGCGGCACGGACCT
GCAGGGTTACGCCAACCCATACTGCATCATCTACCTCAAGGCAACGGCGC
GGCGGCGGCGGCGGCAGCGCCCGCGCGGCGCCACGTACTTCTGCGAGAAG
ACGGTGTGCCCCAAGTGGGTCGACCAGCGCCTCGTGTTCACGGTGCCGGC
GGCGGCGGCGCGCAGCCAGCGCGGCTACTCGCTGCGCGTGATGATCCTCT
CGCGCGACTTCCTGCGCCCTAACGACCTCCTGGGGCAGGCGGCGGTGCCC
CTGGACCTGCTGCTCGATCAGCGCGAGCACGTGGGGTGGTTCCCGCTGAA
CCAGCGCGCGTCGCGCCTCATGGCGCTGTCGCAGATGGACAAGCCCGGCG
GCTGCGGCTCCGTGCAGCTGCGCCTGCAGTGGGTGCACACCAAGACGGCG
CTGCTG
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protein sequence of jgi.p|Trimin1|132449

>Trimin1|132449|gw1.138.13.1 ID=Trimin1|132449|gw1.138.13.1|Name=jgi.p|Trimin1|132449|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=152bp
QVLVEVLAARGLRGTDLQGYANPYCIIYLKATARRRRRQRPRGATYFCEK
TVCPKWVDQRLVFTVPAAAARSQRGYSLRVMILSRDFLRPNDLLGQAAVP
LDLLLDQREHVGWFPLNQRASRLMALSQMDKPGGCGSVQLRLQWVHTKTA
LL
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mRNA from alignment at Contig_138:316161..317981+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13993 ID=mRNA_13993|Name=jgi.p|Trimin1|132449|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1821bp|location=Sequence derived from alignment at Contig_138:316161..317981+ (Tribonema minus UTEX_B_3156 )
CAGGTGCTTGTGGAAGTGCTGGCGGCACGTGGCTTGCGCGGCACGGACCT
GCAGGGTTACGCCAACCCATACTGCATCATCTACCTCAAGGCAAGTTACG
ACCGCGCGTATAGGGTCAGGGTTAGGGCTAGGTTTTAATTTCTATGCCTG
CATGCGTAGGGTACGGTTAGGGTTCGAGGTTAGTTGCACATACAGCATCC
GCTCATGTTGCGATGCGCGCGGTTCGTTGCATTTGCAAGACGGTACTACA
TTGGCTCTACGCATGCACGGCCTGCAGGGCTACGCCAACCCATGCTGCAT
CATCTACCTCAAGGCAAGAGATGGTCGCGCGCGTGTAGGGTTAGGGTTAG
GGCTACGCTGATTGTGTAGGGTTAGGGTTAGAGCTAGGCTAATACTATAT
ACATGCGTAGGATCAGGGTTAGAGTTAAGCTAACACCATTTGGGTAAGGG
TTAGGCTAACACCATTTGCACTGTCCGTGTGCATCGGTAGGTGTCTTGCT
GCTGGTTTCAATTGTGCCCCCCAACTTATGTCAAACCGTACTGCATGATG
CATGTGCCTCAGACGGCTGCTTGCTTGGGGTTAGGGTCAGCGCTACCTCA
ATGGCCTTCAACCTTGTGCATCACCGCCTTGCTATGGCATTGAGTGGTGA
CTGGTGCTGTCATAACTGCACAGTGCAAGGTGCTGAAACCTCGTATGTTG
TGAACAGCCGCGTCCCTCAGGATTAGGGTTGGGGTTGTGTCTGAGCAGTT
TAGCGGAAAATGTGCATTGGCATGTCTTTACTTCGAATCAATAGTGTCTG
CAAGCAGCAGTATTGACAACGCATCAGTCTGTGTGCCACTAGAGGATGGC
GCCTATGACAGTGGCATGCTTGTAAAGCTGTCAATCAATTGCCGACCATA
CCGAGCCCCATTTACGTTTTGATCGTAGCGACTCGCCAACGTTATGAACT
GTGGAATAACATCGCGTGGTATCACAACAGGGCTGCTGCAGATGCAGTAC
CGCCTGTCGCAGGAGCTCCTGCAGTAGGTGCTGCACGACAGGAGCAGCTG
GTGAACGCCCCCCCCTGTGCGGGTGACACACAGCACATCTTCAACTGATC
CATCTTCAAAGGTTTCGTCTAGCTTTCGTCTGTCCAGGCCTATGACGCTC
AGAGCCACCTGAACAGGCCACCAGGCAGCACAGCACACCACGCGCTTCCT
CGCCACCCCTATCAAGCCCTAGCACCTCACCACAGTCAGTGGCACCCTGC
CTGTCCCCTACCTCCTCCCGCCCCCTTCCCTTACCCCCCCCCCAACCGCC
GCAACTGCCACGTAACTGCCCATGCAGATGCCCTACGAGGCCAAGGGCGT
CGCCTCCCTGCGCAGCCTGCACCGCAGCCCCGCCGCCGCCTCCGCAGCAC
CCGCAGCAGCACCGGCGGCGCCGCGCACGTCCACGCGGACGCCGCGGCGG
CGGCGGCAGCGGCGCGGCGGCGGCGGCGGCAGCGCCCGCGCGGCGCCACG
TACTTCTGCGAGAAGACGGTGTGCCCCAAGTGGGTCGACCAGCGCCTCGT
GTTCACGGTGCCGGCGGCGGCGGCGCGCAGCCAGCGCGGCTACTCGCTGC
GCGTGATGATCCTCTCGCGCGACTTCCTGCGCCCTAACGACCTCCTGGGG
CAGGCGGCGGTGCCCCTGGACCTGCTGCTCGATCAGCGCGAGCACGTGGG
GTGGTTCCCGCTGAACCAGCGCGCGTCGCGCCTCATGGCGCTGTCGCAGA
TGGACAAGCCCGGCGGCTGCGGCTCCGTGCAGCTGCGCCTGCAGTGGGTG
CACACCAAGACGGCGCTGCTG
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Coding sequence (CDS) from alignment at Contig_138:316161..317981+

>mRNA_13993 ID=mRNA_13993|Name=jgi.p|Trimin1|132449|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=456bp|location=Sequence derived from alignment at Contig_138:316161..317981+ (Tribonema minus UTEX_B_3156 )
CAGGTGCTTGTGGAAGTGCTGGCGGCACGTGGCTTGCGCGGCACGGACCT
GCAGGGTTACGCCAACCCATACTGCATCATCTACCTCAAGGCAACGGCGC
GGCGGCGGCGGCGGCAGCGCCCGCGCGGCGCCACGTACTTCTGCGAGAAG
ACGGTGTGCCCCAAGTGGGTCGACCAGCGCCTCGTGTTCACGGTGCCGGC
GGCGGCGGCGCGCAGCCAGCGCGGCTACTCGCTGCGCGTGATGATCCTCT
CGCGCGACTTCCTGCGCCCTAACGACCTCCTGGGGCAGGCGGCGGTGCCC
CTGGACCTGCTGCTCGATCAGCGCGAGCACGTGGGGTGGTTCCCGCTGAA
CCAGCGCGCGTCGCGCCTCATGGCGCTGTCGCAGATGGACAAGCCCGGCG
GCTGCGGCTCCGTGCAGCTGCGCCTGCAGTGGGTGCACACCAAGACGGCG
CTGCTG
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