mRNA_13992 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|128835
Unique NamemRNA_13992
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|128835 vs. uniprot
Match: A0A835ZCW3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCW3_9STRA)

HSP 1 Score: 286 bits (732), Expect = 8.400e-98
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 1
Query:    1 YTVVVHPPLVVENLLPHEGTFELADEGRNPLWAARLEPGTSVGVYSVGMDVPLLLLLNLGFCRNMDGVHVHDGLRGGXXXXXXXEDGGDECASGITLTDAVGQRIALRVENRRGGGGQRHVTVYAPYWMVNTSHYRMRFRQDGS 432
            YTVVVHPPLVVENLLPHEGTFELADEGRNPLWAARLEPGTSVGVYSVGMDVPLLLLLNLGFCRNMDGVHVHDGLRGGXXXXXXXEDGGDECASGITLTDAVGQRIALRVENRRGGGGQRHVTVYAPYWMVNTSHYRMRFRQDGS
Sbjct:    1 YTVVVHPPLVVENLLPHEGTFELADEGRNPLWAARLEPGTSVGVYSVGMDVPLLLLLNLGFCRNMDGVHVHDGLRGGXXXXXXXEDGGDECASGITLTDAVGQRIALRVENRRGGGGQRHVTVYAPYWMVNTSHYRMRFRQDGS 144          
BLAST of jgi.p|Trimin1|128835 vs. uniprot
Match: D7G8Y9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Y9_ECTSI)

HSP 1 Score: 149 bits (376), Expect = 6.500e-39
Identity = 82/216 (37.96%), Postives = 106/216 (49.07%), Query Frame = 1
Query:    1 YTVVVHPPLVVENLLPHEGTFELADEGRNPLWAARLEPGTSVGVYSVGMDVPLLLLLNLGFCRNMDGVHVHDGLRGGXXXXXXXE-DGGD------------------------------------------------------------------------ECASGITLTDAVGQRIALRVENRRGGGGQRHVTVYAPYWMVNTSHYRMRFRQDG 429
            YT+++HPPLVVENLLP+ G+FEL D+ +  LW A+L+ G S+GVY+ G+D PL + +NLGFCR  + V +HDG RG           GGD                                                                        E  S + LTD+VGQR+ + +ENR G GGQR+VTVY P WMVNTSHYR+R+RQDG
Sbjct: 4742 YTMMLHPPLVVENLLPYAGSFELVDQSKTVLWRAQLDSGASIGVYTAGLDTPLKMFINLGFCRTHEAVLIHDGRRGARGSLGGFNLAGGDGLNSINTRFSTNGHTRPKSGSGSGSGNIGDWISAAGSAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPAAELGSSVALTDSVGQRVEVYLENRLGDGGQRNVTVYCPVWMVNTSHYRLRYRQDG 4957          
BLAST of jgi.p|Trimin1|128835 vs. uniprot
Match: B8CBY6_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CBY6_THAPS)

HSP 1 Score: 116 bits (290), Expect = 2.460e-27
Identity = 72/218 (33.03%), Postives = 99/218 (45.41%), Query Frame = 1
Query:    1 YTVVVHPPLVVENLLPHEGTFELADE-GRNPLWAARLEPGTSVGVYSVGMDVPLLLLLNLGFCRNM--DGVHVHDG---------------------------------------------LRGGXXXXXXXED----------------------------GGDECASGITLTDAVGQRIALRVENRRGGGGQRHVTVYAPYWMVNTSHYRMRFRQD 426
            YT+V+HPP+V+ENLLP  G FEL D   RN LW   LE G  V VY+VG+D PL+LLLNLGFCR    +G  +H G                                             L+GG                                     G ++ AS   + D++GQR+ L ++N  GGGGQR V++Y PYW+VNT+ + +++RQ+
Sbjct: 3144 YTLVIHPPIVIENLLPERGRFELMDATNRNVLWHGVLEAGQKVPVYTVGLDSPLMLLLNLGFCRTPVGEGALIHHGGGDGLFRAGWNTLGNAMKTSKEKVKRTLYTMTESKDIRGAGRLSILKGGMKKAASGSRKVGRLGFDTENEAIEESARGGMWRGDGFGAEDVASETNVVDSLGQRLTLLIDNVIGGGGQRRVSLYCPYWIVNTTEHSLKYRQE 3361          
BLAST of jgi.p|Trimin1|128835 vs. uniprot
Match: K0SGL5_THAOC (PDZ domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SGL5_THAOC)

HSP 1 Score: 110 bits (274), Expect = 3.450e-25
Identity = 71/218 (32.57%), Postives = 102/218 (46.79%), Query Frame = 1
Query:    1 YTVVVHPPLVVENLLPHEGTFELADEG-RNPLWAARLEPGTSVGVYSVGMDVPLLLLLNLGFCRNM-DGVHVHDG---------------------------------------------LRGGXXXXXXXE--------------------------DGG---DECASGITLTDAVGQRIALRVENRRGGGGQRHVTVYAPYWMVNTSHYRMRFRQD 426
            YT+V+HPP+V+ENLLP  G FEL D   RN LW A LEPG  V V++VG+D PLLLL+N  +C+ + DG  VH G                                             L+ G       E                          DGG   ++ AS +T+ D+ GQ++ L ++N  G GGQR V+VY P+W+VNT+ + ++++Q+
Sbjct: 2093 YTLVIHPPIVIENLLPERGRFELMDGNTRNVLWWAILEPGEIVPVHTVGLDSPLLLLVNFVYCKTIGDGALVHRGEAEGILRAGWNTIGTAVKTSRDRVKKTLNTITDTKDNRGVTKFNMLQAGGKTPAKGEQLGFSSENDSIIESTGLSTSARRISGDGGFGSEDVASELTVVDSQGQKLTLLLDNESGRGGQRRVSVYCPFWIVNTTEHSLKYKQE 2310          
BLAST of jgi.p|Trimin1|128835 vs. uniprot
Match: A0A7R9UEG4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UEG4_9STRA)

HSP 1 Score: 101 bits (251), Expect = 4.340e-22
Identity = 55/148 (37.16%), Postives = 81/148 (54.73%), Query Frame = 1
Query:    1 YTVVVHPPLVVENLLPHEGTFELADEGRNPL-WAARLEPGTSVGVYSVGMDVPLLLLLNLGFCRNMDGVH-VHDGLRGGXXXXXXX---EDGGDECASGITLTDAVGQRIALRVENRRGGGGQRHVTVYAPYWMVNTSHYRMRFRQDG 429
            Y ++VHPP+V+ENLLP    F+L    +  + W+  L  G  V V++VG++ PL LL+ L F  ++     +H G              +   +  A  I L D  GQ++ L +EN  GGGGQR V VY PYWMVNT+   +R+ ++G
Sbjct: 1281 YRLIVHPPIVLENLLPRPAVFKLMHGIQERIVWSGTLRAGERVPVHTVGLEAPLRLLMKLDFAESVAPYALIHTGAESSTQTGFGLLLSQIINESVAKQIVLRDIQGQKLHLAIENTLGGGGQRQVVVYCPYWMVNTTGMDIRYHEEG 1428          
BLAST of jgi.p|Trimin1|128835 vs. uniprot
Match: A0A1Z5JFP8_FISSO (PDZ domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JFP8_FISSO)

HSP 1 Score: 100 bits (250), Expect = 5.900e-22
Identity = 68/224 (30.36%), Postives = 97/224 (43.30%), Query Frame = 1
Query:    1 YTVVVHPPLVVENLLPHEGTFELADE-GRNPLWAARLEPGTSVGVYSVGMDVPLLLLLNLGFCRNM--DGVHVHDG------LR------------------------------------------------------------GGXXXXXXXEDGG-----------DECASGITLTDAVGQRIALRVENRRGGGGQRHVTVYAPYWMVNTSHYRMRFRQDGS 432
            Y++ +HPP VV NLLP  G FEL     +  LW   +EPG  V V+S+G+D PL+L +NLGFCR    +G  VH G      LR                                                            G         DG            ++ A G T+ D++GQ++ L++EN RGGGGQR ++VY P+W+VNT+   +R++Q+ S
Sbjct: 2619 YSLSIHPPFVVVNLLPKIGRFELMHAVHKKVLWFKDVEPGEEVSVHSLGLDSPLMLYINLGFCRTPVGEGALVHHGADHNARLRENLVGLKSIGKAGKAVTKQIGKTLTSIGDSPDKRAQNKIFKAQNPHLKERTSSKQKRVRIGNTNDSQGAADGKTYRVDSSSYSPEDVADGATVVDSLGQKLRLQIENIRGGGGQRRISVYCPFWVVNTTELPLRYKQENS 2842          
BLAST of jgi.p|Trimin1|128835 vs. uniprot
Match: W7TRD9_9STRA (Vacuolar protein sorting-associated protein 13 family protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TRD9_9STRA)

HSP 1 Score: 100 bits (250), Expect = 5.960e-22
Identity = 54/144 (37.50%), Postives = 83/144 (57.64%), Query Frame = 1
Query:    1 YTVVVHPPLVVENLLPHEGTFELAD-EGRNPLWAARLEPGTSVGVYSVGMDVPLLLLLNLGFCRNMDGVHVHDGLRGGXXXXXXXEDGGDECASGITLTDAVGQRIALRVENRRGGGGQRHVTVYAPYWMVNTSHYRMRFRQDG 429
            Y +V+HPPLV+ENLLP    F L D   +  LW A L+ G S+ ++ V +D  +LL +    CR+ + V +H G  GG        D   + A  IT+ DA  Q++ L++E++ GG GQR   +Y PYW+VN ++  + + Q+G
Sbjct: 2982 YMIVIHPPLVLENLLPEACVFRLYDFTSKAMLWKAHLQAGQSMPIHDVRVDCSVLLDVQTEDCRSTESVLIHKG--GGALRGMEAID--HDVAKFITMMDAENQKLLLQLEHQVGGAGQRRTILYCPYWLVNNTNCLLTYIQEG 3121          
BLAST of jgi.p|Trimin1|128835 vs. uniprot
Match: A0A1Z5KNZ8_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KNZ8_FISSO)

HSP 1 Score: 100 bits (248), Expect = 1.110e-21
Identity = 67/224 (29.91%), Postives = 97/224 (43.30%), Query Frame = 1
Query:    1 YTVVVHPPLVVENLLPHEGTFELADE-GRNPLWAARLEPGTSVGVYSVGMDVPLLLLLNLGFCRNM--DGVHVHDG------LR------------------------------------------------------------GGXXXXXXXEDGG-----------DECASGITLTDAVGQRIALRVENRRGGGGQRHVTVYAPYWMVNTSHYRMRFRQDGS 432
            Y++ +HPP VV NLLP +G FEL     +  LW   +EPG  V V+S+G+D PL+L +NLGFCR    +G  VH G      LR                                                            G         DG             + A  +T+ D++GQ++ L++EN RGGGGQR ++VY P+W+VNT+   +R++Q+ S
Sbjct: 2622 YSLSIHPPFVVINLLPKKGRFELVHAVHKKVLWVKDVEPGEEVAVHSLGLDSPLVLYINLGFCRTPVGEGALVHHGADHNARLRENLIGLKSIGKAGKAVTKQIGKTLTAIGDSPDKRAQNKISRAQNPHLLQRKSPQQKQVRIGNTNDSQGAADGKTYRVDSSSYSPQDVADVVTVVDSLGQKLRLQIENIRGGGGQRRISVYCPFWVVNTTELPLRYKQENS 2845          
BLAST of jgi.p|Trimin1|128835 vs. uniprot
Match: A0A7S2Y632_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y632_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 5.170e-21
Identity = 70/229 (30.57%), Postives = 93/229 (40.61%), Query Frame = 1
Query:    1 YTVVVHPPLVVENLLPHEGTFELADEGRNP-LWAARLEPGTSVGVYSVGMDVPLLLLLNLGFCRNM--DGVHVHDGL---------------------------------------RGGXXXXXXXED----------------------GGDE---------------------CASGITLTDAVGQRIALRVENRRGGGGQRHVTVYAPYWMVNTSHYRMRFRQDGS 432
            YT+ V+ P VV NLLP  G FEL    R   LW A LEPG  V V+SVG+D PLLLL+NL FCR    +G  VH G+                                       + G       ++                       GD                      C     + D VGQR+ L +EN RGGGGQR ++VY P+W++NT+ + + +RQ+ S
Sbjct:  953 YTLSVYAPFVVANLLPEPGRFELMHAVRKTVLWFADLEPGQQVSVHSVGLDAPLLLLINLRFCRTPIGEGALVHHGVDPPPEAREHLGRLRSIGKAGKAVTMQLGKTLTALGESPDKRGHDRLYLAQNKENQPIHDKKGHHNTKRVAKVSAGDSATEDVDGKTYRVDTTIFFPENCVDETVVVDGVGQRLTLGIENIRGGGGQRRISVYCPFWIINTTEHALAYRQERS 1181          
BLAST of jgi.p|Trimin1|128835 vs. uniprot
Match: A0A482SP39_9ARCH (SHR-BD domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SP39_9ARCH)

HSP 1 Score: 89.0 bits (219), Expect = 3.600e-20
Identity = 45/102 (44.12%), Postives = 60/102 (58.82%), Query Frame = 1
Query:  157 LLLLLNLGFCRNMDGVHVH-DGLRGGXXXXXXX----------EDGGDECASGITLTDAVGQRIALRVENRRGGGGQRHVTVYAPYWMVNTSHYRMRFRQDG 429
            +LL++NL +CR  +GV +H   L G                  +D G++    I LTD VGQ++ L VEN +GGGGQRHV VY PYW+VNTS Y  R R++G
Sbjct:    1 MLLIINLRYCRASEGVLIHRPNLAGNPPLSLVNRLQKAIEGILDDSGEDDVYSIVLTDTVGQKLRLNVENTQGGGGQRHVVVYCPYWVVNTSQYAFRVREEG 102          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|128835 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A835ZCW3_9STRA8.400e-98100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
D7G8Y9_ECTSI6.500e-3937.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
B8CBY6_THAPS2.460e-2733.03Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
K0SGL5_THAOC3.450e-2532.57PDZ domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A7R9UEG4_9STRA4.340e-2237.16Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A1Z5JFP8_FISSO5.900e-2230.36PDZ domain-containing protein n=1 Tax=Fistulifera ... [more]
W7TRD9_9STRA5.960e-2237.50Vacuolar protein sorting-associated protein 13 fam... [more]
A0A1Z5KNZ8_FISSO1.110e-2129.91Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A7S2Y632_9STRA5.170e-2130.57Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A482SP39_9ARCH3.600e-2044.12SHR-BD domain-containing protein n=1 Tax=archaeon ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_138contigContig_138:306219..306650 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|128835|gw1.138.1.1
Descriptionregulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization
COG categoryU
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5043@1|root,KOG1809@2759|Eukaryota
Evalue1.07e-39
Seed ortholog2880.D7G8Y9
Hectar predicted targeting categoryother localisation
TranscriptId129157
TrackFilteredModels1
ProteinId128835
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|128835gene_13992Tribonema minus UTEX_B_3156 geneContig_138 306219..306650 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13992_1exon_13992_1Tribonema minus UTEX_B_3156 exonContig_138 306219..306650 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13992CDS_13992Tribonema minus UTEX_B_3156 CDSContig_138 306219..306650 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|128835Trimin1|128835|gw1.138.1.1Tribonema minus UTEX_B_3156 polypeptideContig_138 306219..306650 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13992 ID=mRNA_13992|Name=jgi.p|Trimin1|128835|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=432bp|location=Sequence derived from alignment at Contig_138:306219..306650+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TACACGGTCGTCGTGCACCCGCCGCTGGTCGTGGAGAACCTGCTGCCGCA
CGAGGGGACGTTCGAGCTGGCGGACGAGGGGCGCAACCCGCTGTGGGCGG
CGCGCCTCGAGCCGGGGACGTCCGTCGGCGTCTACTCCGTGGGCATGGAC
GTGCCGCTGCTGCTGCTGCTGAACCTCGGCTTCTGCAGGAACATGGACGG
CGTGCACGTGCACGACGGGCTGCGCGGCGGCGGCGGCGGCGGCGGCGCGC
GCGAGGACGGCGGCGACGAGTGCGCGAGCGGCATCACGCTCACGGACGCC
GTCGGCCAGCGCATCGCGCTGCGCGTGGAGAACCGGCGCGGCGGCGGCGG
GCAGCGCCACGTCACCGTGTACGCGCCGTACTGGATGGTCAACACGTCGC
ACTACCGCATGCGCTTCCGCCAGGACGGCTCC
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protein sequence of jgi.p|Trimin1|128835

>Trimin1|128835|gw1.138.1.1 ID=Trimin1|128835|gw1.138.1.1|Name=jgi.p|Trimin1|128835|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=144bp
YTVVVHPPLVVENLLPHEGTFELADEGRNPLWAARLEPGTSVGVYSVGMD
VPLLLLLNLGFCRNMDGVHVHDGLRGGGGGGGAREDGGDECASGITLTDA
VGQRIALRVENRRGGGGQRHVTVYAPYWMVNTSHYRMRFRQDGS
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mRNA from alignment at Contig_138:306219..306650+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13992 ID=mRNA_13992|Name=jgi.p|Trimin1|128835|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=432bp|location=Sequence derived from alignment at Contig_138:306219..306650+ (Tribonema minus UTEX_B_3156 )
TACACGGTCGTCGTGCACCCGCCGCTGGTCGTGGAGAACCTGCTGCCGCA CGAGGGGACGTTCGAGCTGGCGGACGAGGGGCGCAACCCGCTGTGGGCGG CGCGCCTCGAGCCGGGGACGTCCGTCGGCGTCTACTCCGTGGGCATGGAC GTGCCGCTGCTGCTGCTGCTGAACCTCGGCTTCTGCAGGAACATGGACGG CGTGCACGTGCACGACGGGCTGCGCGGCGGCGGCGGCGGCGGCGGCGCGC GCGAGGACGGCGGCGACGAGTGCGCGAGCGGCATCACGCTCACGGACGCC GTCGGCCAGCGCATCGCGCTGCGCGTGGAGAACCGGCGCGGCGGCGGCGG GCAGCGCCACGTCACCGTGTACGCGCCGTACTGGATGGTCAACACGTCGC ACTACCGCATGCGCTTCCGCCAGGACGGCTCC
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Coding sequence (CDS) from alignment at Contig_138:306219..306650+

>mRNA_13992 ID=mRNA_13992|Name=jgi.p|Trimin1|128835|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=432bp|location=Sequence derived from alignment at Contig_138:306219..306650+ (Tribonema minus UTEX_B_3156 )
TACACGGTCGTCGTGCACCCGCCGCTGGTCGTGGAGAACCTGCTGCCGCA
CGAGGGGACGTTCGAGCTGGCGGACGAGGGGCGCAACCCGCTGTGGGCGG
CGCGCCTCGAGCCGGGGACGTCCGTCGGCGTCTACTCCGTGGGCATGGAC
GTGCCGCTGCTGCTGCTGCTGAACCTCGGCTTCTGCAGGAACATGGACGG
CGTGCACGTGCACGACGGGCTGCGCGGCGGCGGCGGCGGCGGCGGCGCGC
GCGAGGACGGCGGCGACGAGTGCGCGAGCGGCATCACGCTCACGGACGCC
GTCGGCCAGCGCATCGCGCTGCGCGTGGAGAACCGGCGCGGCGGCGGCGG
GCAGCGCCACGTCACCGTGTACGCGCCGTACTGGATGGTCAACACGTCGC
ACTACCGCATGCGCTTCCGCCAGGACGGCTCC
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