mRNA_13991 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|176561
Unique NamemRNA_13991
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|176561 vs. uniprot
Match: A0A835Z9T2_9STRA (Vacuolar protein sorting-associated protein 13A N-terminal domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9T2_9STRA)

HSP 1 Score: 181 bits (458), Expect = 1.130e-57
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1 
Query:    1 MNLSKKLANVLARTLGEYVQNVDEDSLQVGLWAGDLQLKNLELRPDALRKAELPVVLRSGSVGTVRLKVPWKSFGSGGVALVVSDLKVVLEP 276
            MNLSKKLANVLARTLGEYVQNVDEDSLQVGLWAGDLQLKNLELRPDALRKAELPVVLRSGSVGTVRLKVPWKSFGSGGVALVVSDLKVVLEP
Sbjct:    1 MNLSKKLANVLARTLGEYVQNVDEDSLQVGLWAGDLQLKNLELRPDALRKAELPVVLRSGSVGTVRLKVPWKSFGSGGVALVVSDLKVVLEP 92
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BLAST of jgi.p|Trimin1|176561 vs. uniprot
Match: A0A540KMB7_MALBA (Uncharacterized protein n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540KMB7_MALBA)

HSP 1 Score: 87.4 bits (215), Expect = 4.190e-18
Identity = 36/90 (40.00%), Postives = 66/90 (73.33%), Query Frame = 1 
Query:    7 LSKKLANVLARTLGEYVQNVDEDSLQVGLWAGDLQLKNLELRPDALRKAELPVVLRSGSVGTVRLKVPWKSFGSGGVALVVSDLKVVLEP 276
            L  ++AN+L R LG+YV+ +++++L++ +W GD++LKN++L+P+AL   ELPV +++G +G+V+LKVPW   G   V + +  + ++ EP
Sbjct:    2 LEDQVANLLQRYLGDYVRGLNKEALKISVWRGDVELKNMQLKPEALNALELPVKVKAGFLGSVKLKVPWSKLGQDPVLVSLDRIFLLAEP 91
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BLAST of jgi.p|Trimin1|176561 vs. uniprot
Match: UPI0010AAC381 (LOW QUALITY PROTEIN: uncharacterized protein LOC103437031 n=1 Tax=Malus domestica TaxID=3750 RepID=UPI0010AAC381)

HSP 1 Score: 87.0 bits (214), Expect = 5.820e-18
Identity = 36/90 (40.00%), Postives = 66/90 (73.33%), Query Frame = 1 
Query:    7 LSKKLANVLARTLGEYVQNVDEDSLQVGLWAGDLQLKNLELRPDALRKAELPVVLRSGSVGTVRLKVPWKSFGSGGVALVVSDLKVVLEP 276
            L  ++AN+L R LG+YV+ +++++L++ +W GD++LKN++L+P+AL   ELPV +++G +G+V+LKVPW   G   V + +  + ++ EP
Sbjct:    2 LEDQVANLLQRYLGDYVRGLNKEALKISVWRGDVELKNMQLKPEALNALELPVKVKAGFLGSVKLKVPWSRLGQDPVLVSLDRIFLLAEP 91
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BLAST of jgi.p|Trimin1|176561 vs. uniprot
Match: UPI001CC3D4B1 (uncharacterized protein LOC122648528 isoform X1 n=2 Tax=Telopea speciosissima TaxID=54955 RepID=UPI001CC3D4B1)

HSP 1 Score: 87.0 bits (214), Expect = 5.820e-18
Identity = 36/90 (40.00%), Postives = 65/90 (72.22%), Query Frame = 1 
Query:    7 LSKKLANVLARTLGEYVQNVDEDSLQVGLWAGDLQLKNLELRPDALRKAELPVVLRSGSVGTVRLKVPWKSFGSGGVALVVSDLKVVLEP 276
            L  ++AN+L R LG YV+ +++++L++ +W GD++LKN++L+P+AL   +LPV +++G +G+VRLKVPW   G   V + +  + ++ EP
Sbjct:    2 LEDQVANLLQRYLGNYVRGLNKEALKISVWQGDVELKNMQLKPEALNALKLPVKVKAGFLGSVRLKVPWSRLGQEPVVVYLDRIFILAEP 91
[Close]
BLAST of jgi.p|Trimin1|176561 vs. uniprot
Match: A0A498JUA7_MALDO (PH domain-containing protein n=1 Tax=Malus domestica TaxID=3750 RepID=A0A498JUA7_MALDO)

HSP 1 Score: 87.0 bits (214), Expect = 5.830e-18
Identity = 36/90 (40.00%), Postives = 66/90 (73.33%), Query Frame = 1 
Query:    7 LSKKLANVLARTLGEYVQNVDEDSLQVGLWAGDLQLKNLELRPDALRKAELPVVLRSGSVGTVRLKVPWKSFGSGGVALVVSDLKVVLEP 276
            L  ++AN+L R LG+YV+ +++++L++ +W GD++LKN++L+P+AL   ELPV +++G +G+V+LKVPW   G   V + +  + ++ EP
Sbjct:    2 LEDQVANLLQRYLGDYVRGLNKEALKISVWRGDVELKNMQLKPEALNALELPVKVKAGFLGSVKLKVPWSRLGQDPVLVSLDRIFLLAEP 91
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BLAST of jgi.p|Trimin1|176561 vs. uniprot
Match: R7QT58_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QT58_CHOCR)

HSP 1 Score: 86.3 bits (212), Expect = 1.060e-17
Identity = 41/92 (44.57%), Postives = 63/92 (68.48%), Query Frame = 1 
Query:   19 LANVLARTLGEYVQNVDEDSLQVGLWAGDLQLKNLELRPDALRKA------ELPVVLRSGSVGTVRLKVPWKSFGSGGVALVVSDLKVVLEP 276
            +A+VL R LG YV  +++DS+++G+W+GDL+LK+L LRPDAL         +LPV + +G +G +RL+VPWK+  S  V + + D+ VV  P
Sbjct:    6 VADVLVRVLGSYVDGLNKDSIRLGVWSGDLELKHLRLRPDALAVLFETLGLDLPVTVTAGYIGLLRLEVPWKALRSAPVRIYMHDVTVVASP 97
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BLAST of jgi.p|Trimin1|176561 vs. uniprot
Match: UPI001D1D35E6 (uncharacterized protein n=1 Tax=Ogataea philodendri TaxID=1378263 RepID=UPI001D1D35E6)

HSP 1 Score: 85.9 bits (211), Expect = 1.480e-17
Identity = 37/90 (41.11%), Postives = 61/90 (67.78%), Query Frame = 1 
Query:    7 LSKKLANVLARTLGEYVQNVDEDSLQVGLWAGDLQLKNLELRPDALRKAELPVVLRSGSVGTVRLKVPWKSFGSGGVALVVSDLKVVLEP 276
            L   +AN+L R LG YV+N D   L +G+W+GD++LKNL+L+ ++L K ELPV +R G +G + L++PW +  S  V +++ D+ ++  P
Sbjct:    2 LESLVANILNRALGAYVENFDPKQLNIGIWSGDVKLKNLKLKKESLEKFELPVDVRFGHIGELTLQIPWSNLKSKPVKVLIDDVFLLASP 91
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BLAST of jgi.p|Trimin1|176561 vs. uniprot
Match: A0A2K3L4I2_TRIPR (Pleckstrin homology domain-containing protein (Fragment) n=4 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3L4I2_TRIPR)

HSP 1 Score: 80.1 bits (196), Expect = 1.740e-17
Identity = 35/84 (41.67%), Postives = 58/84 (69.05%), Query Frame = 1 
Query:   25 NVLARTLGEYVQNVDEDSLQVGLWAGDLQLKNLELRPDALRKAELPVVLRSGSVGTVRLKVPWKSFGSGGVALVVSDLKVVLEP 276
            ++L R LGEYV  +  ++L++ +W GD+ LK+L+L+ +AL   +LPV +++G VGT+ LKVPWKS G   V +++  + V+  P
Sbjct:    8 HLLRRYLGEYVHGLSSEALRISVWKGDVVLKDLKLKSEALNALKLPVTVKAGFVGTITLKVPWKSLGKEPVIVLIDRVFVLANP 91
[Close]
BLAST of jgi.p|Trimin1|176561 vs. uniprot
Match: G5AIH1_PHYSP (Chorein N-terminal domain-containing protein (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5AIH1_PHYSP)

HSP 1 Score: 79.3 bits (194), Expect = 1.850e-17
Identity = 34/86 (39.53%), Postives = 58/86 (67.44%), Query Frame = 1 
Query:   19 LANVLARTLGEYVQNVDEDSLQVGLWAGDLQLKNLELRPDALRKAELPVVLRSGSVGTVRLKVPWKSFGSGGVALVVSDLKVVLEP 276
            + ++L   LG+YV  +  DSL VGLW+G+L+L++L L+P +L + +LPV + SGSVG V +++PW   GS  +A+ +  +  ++ P
Sbjct:    6 ILSILEAQLGKYVAGLRSDSLVVGLWSGELELRDLSLKPHSLAELQLPVAVTSGSVGRVLVRLPWNQLGSASMAITLEGVLALVVP 91
[Close]
BLAST of jgi.p|Trimin1|176561 vs. uniprot
Match: A0A7I8LAC7_SPIIN (Hypothetical protein n=2 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8LAC7_SPIIN)

HSP 1 Score: 80.5 bits (197), Expect = 2.050e-17
Identity = 32/90 (35.56%), Postives = 64/90 (71.11%), Query Frame = 1 
Query:    7 LSKKLANVLARTLGEYVQNVDEDSLQVGLWAGDLQLKNLELRPDALRKAELPVVLRSGSVGTVRLKVPWKSFGSGGVALVVSDLKVVLEP 276
            L  ++A++L R LG YV+ +++++L++ +W GD++L N++L+P+AL   +LPV +++G +G+VR++VPW   G   V + +  + ++ EP
Sbjct:    2 LEDQVASLLQRYLGNYVRGLNKEALKISVWKGDVELTNMQLKPEALNALKLPVKVKAGFLGSVRIEVPWSRLGQEPVLVYLDRILILAEP 91
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|176561 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z9T2_9STRA1.130e-57100.00Vacuolar protein sorting-associated protein 13A N-... [more]
A0A540KMB7_MALBA4.190e-1840.00Uncharacterized protein n=1 Tax=Malus baccata TaxI... [more]
UPI0010AAC3815.820e-1840.00LOW QUALITY PROTEIN: uncharacterized protein LOC10... [more]
UPI001CC3D4B15.820e-1840.00uncharacterized protein LOC122648528 isoform X1 n=... [more]
A0A498JUA7_MALDO5.830e-1840.00PH domain-containing protein n=1 Tax=Malus domesti... [more]
R7QT58_CHOCR1.060e-1744.57Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
UPI001D1D35E61.480e-1741.11uncharacterized protein n=1 Tax=Ogataea philodendr... [more]
A0A2K3L4I2_TRIPR1.740e-1741.67Pleckstrin homology domain-containing protein (Fra... [more]
G5AIH1_PHYSP1.850e-1739.53Chorein N-terminal domain-containing protein (Frag... [more]
A0A7I8LAC7_SPIIN2.050e-1735.56Hypothetical protein n=2 Tax=Spirodela intermedia ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_138contigContig_138:290326..290601 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|176561|e_gw1.138.22.1
Descriptionregulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization
COG categoryU
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5043@1|root,KOG1809@2759|Eukaryota
Evalue2.76e-24
Seed ortholog2880.D7G8Y9
Hectar predicted targeting categoryother localisation
TranscriptId176883
TrackFilteredModels1
ProteinId176561
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|176561gene_13991Tribonema minus UTEX_B_3156 geneContig_138 290326..290601 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13991_1exon_13991_1Tribonema minus UTEX_B_3156 exonContig_138 290326..290601 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13991CDS_13991Tribonema minus UTEX_B_3156 CDSContig_138 290326..290601 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|176561Trimin1|176561|e_gw1.138.22.1Tribonema minus UTEX_B_3156 polypeptideContig_138 290326..290601 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13991 ID=mRNA_13991|Name=jgi.p|Trimin1|176561|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=276bp|location=Sequence derived from alignment at Contig_138:290326..290601+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAATTTGAGCAAGAAGCTTGCCAACGTGTTGGCTCGCACCTTGGGAGA
GTATGTCCAGAATGTGGACGAGGACAGCCTGCAGGTTGGTCTATGGGCTG
GCGATCTGCAGCTCAAGAACCTGGAACTGCGGCCCGATGCTCTGCGCAAG
GCCGAGCTGCCGGTGGTGCTCAGGTCCGGGTCTGTCGGCACTGTCAGGCT
CAAAGTGCCGTGGAAGAGCTTCGGCAGCGGTGGAGTTGCGTTGGTGGTGT
CCGATCTGAAGGTCGTTCTGGAGCCC
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protein sequence of jgi.p|Trimin1|176561

>Trimin1|176561|e_gw1.138.22.1 ID=Trimin1|176561|e_gw1.138.22.1|Name=jgi.p|Trimin1|176561|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=92bp
MNLSKKLANVLARTLGEYVQNVDEDSLQVGLWAGDLQLKNLELRPDALRK
AELPVVLRSGSVGTVRLKVPWKSFGSGGVALVVSDLKVVLEP
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mRNA from alignment at Contig_138:290326..290601+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13991 ID=mRNA_13991|Name=jgi.p|Trimin1|176561|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=276bp|location=Sequence derived from alignment at Contig_138:290326..290601+ (Tribonema minus UTEX_B_3156 )
ATGAATTTGAGCAAGAAGCTTGCCAACGTGTTGGCTCGCACCTTGGGAGA
GTATGTCCAGAATGTGGACGAGGACAGCCTGCAGGTTGGTCTATGGGCTG
GCGATCTGCAGCTCAAGAACCTGGAACTGCGGCCCGATGCTCTGCGCAAG
GCCGAGCTGCCGGTGGTGCTCAGGTCCGGGTCTGTCGGCACTGTCAGGCT
CAAAGTGCCGTGGAAGAGCTTCGGCAGCGGTGGAGTTGCGTTGGTGGTGT
CCGATCTGAAGGTCGTTCTGGAGCCC
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Coding sequence (CDS) from alignment at Contig_138:290326..290601+

>mRNA_13991 ID=mRNA_13991|Name=jgi.p|Trimin1|176561|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=276bp|location=Sequence derived from alignment at Contig_138:290326..290601+ (Tribonema minus UTEX_B_3156 )
ATGAATTTGAGCAAGAAGCTTGCCAACGTGTTGGCTCGCACCTTGGGAGA
GTATGTCCAGAATGTGGACGAGGACAGCCTGCAGGTTGGTCTATGGGCTG
GCGATCTGCAGCTCAAGAACCTGGAACTGCGGCCCGATGCTCTGCGCAAG
GCCGAGCTGCCGGTGGTGCTCAGGTCCGGGTCTGTCGGCACTGTCAGGCT
CAAAGTGCCGTGGAAGAGCTTCGGCAGCGGTGGAGTTGCGTTGGTGGTGT
CCGATCTGAAGGTCGTTCTGGAGCCC
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