mRNA_13965 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|176511
Unique NamemRNA_13965
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|176511 vs. uniprot
Match: A0A836CNG4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNG4_9STRA)

HSP 1 Score: 333 bits (854), Expect = 6.690e-116
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 1 
Query:    1 MKGTALLLVCGAAFVSAAVDPCGSDVCQFKGNDTANCSVIGQLGDGVLRAYTACSQDCADDLNIKREAIDPDLLETLFPFPDGTGGSASGLVNYLRFDGSSVVMSLRAGFPTFFIEDPRLLKRVQKVGACKLWWHIRSRFAYSVSWCHSSPLAPRHTHV 477
            MKGTALLLVCGAAFVSAAVDPCGSDVCQFKGNDTANCSVIGQLGDGVLRAYTACSQDCADDLNIKREAIDPDLLETLFPFPDGTGGSASGLVNYLRFDGSSVVMSLRAGFPTFFIEDPRLLKRVQKVGACKLWWHIRSRFAYSVSWCHSSPLAPRHTHV
Sbjct:    1 MKGTALLLVCGAAFVSAAVDPCGSDVCQFKGNDTANCSVIGQLGDGVLRAYTACSQDCADDLNIKREAIDPDLLETLFPFPDGTGGSASGLVNYLRFDGSSVVMSLRAGFPTFFIEDPRLLKRVQKVGACKLWWHIRSRFAYSVSWCHSSPLAPRHTHV 159
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BLAST of jgi.p|Trimin1|176511 vs. uniprot
Match: A0A836CPJ5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPJ5_9STRA)

HSP 1 Score: 220 bits (560), Expect = 1.660e-69
Identity = 107/124 (86.29%), Postives = 110/124 (88.71%), Query Frame = 1 
Query:    1 MKGTALLLVCGAAFVSAAVDPCGSDVCQFKGNDTANCSVIGQLGDGVLRAYTACSQDCADDLNIKREAIDPDLLETLFPFPDGTGGSASGLVNYLRFDGSSVVMSLRAGFPTFFIEDPRLLKRV 372
            MK TALL VCGAA V AAVDPCGSDVCQFKG D ANCS IGQLGDGVLRAYTACSQDC DDLNIKREAIDPDLL TLFP PDGTGGSASGLVNYLRFDGSSV MSLRAGFPTFF+EDP +  +V
Sbjct:    1 MKSTALLFVCGAALVGAAVDPCGSDVCQFKGKDAANCSAIGQLGDGVLRAYTACSQDCLDDLNIKREAIDPDLLATLFPNPDGTGGSASGLVNYLRFDGSSVAMSLRAGFPTFFMEDPDVAGKV 124
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|176511 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A836CNG4_9STRA6.690e-116100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CPJ5_9STRA1.660e-6986.29Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_138contigContig_138:83475..83954 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|176511|e_gw1.138.43.1
Hectar predicted targeting categorysignal peptide
TranscriptId176833
TrackFilteredModels1
ProteinId176511
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|176511gene_13965Tribonema minus UTEX_B_3156 geneContig_138 83475..83954 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13965_1exon_13965_1Tribonema minus UTEX_B_3156 exonContig_138 83475..83954 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13965CDS_13965Tribonema minus UTEX_B_3156 CDSContig_138 83475..83954 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|176511Trimin1|176511|e_gw1.138.43.1Tribonema minus UTEX_B_3156 polypeptideContig_138 83475..83954 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13965 ID=mRNA_13965|Name=jgi.p|Trimin1|176511|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=480bp|location=Sequence derived from alignment at Contig_138:83475..83954- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAGGCACAGCACTATTGCTCGTGTGCGGCGCCGCATTTGTCAGCGC
TGCAGTGGACCCCTGTGGATCAGATGTGTGTCAGTTCAAGGGCAACGATA
CGGCGAATTGCAGTGTGATAGGGCAGCTTGGCGATGGCGTCCTCAGAGCG
TACACAGCCTGCTCTCAAGACTGCGCGGATGATCTGAACATCAAACGGGA
AGCGATCGACCCTGATCTGCTGGAGACCCTGTTTCCCTTTCCGGATGGCA
CCGGTGGGTCAGCCTCTGGCCTGGTGAACTACCTCCGATTTGATGGCTCC
AGTGTTGTCATGTCGCTGCGCGCAGGCTTCCCCACATTTTTCATAGAGGA
TCCAAGGTTGTTGAAGAGAGTGCAGAAAGTCGGCGCATGCAAGCTATGGT
GGCACATCAGGTCTAGGTTTGCGTATTCAGTGTCTTGGTGCCACAGTTCG
CCATTGGCGCCAAGGCATACACATGTATGA
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protein sequence of jgi.p|Trimin1|176511

>Trimin1|176511|e_gw1.138.43.1 ID=Trimin1|176511|e_gw1.138.43.1|Name=jgi.p|Trimin1|176511|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=160bp
MKGTALLLVCGAAFVSAAVDPCGSDVCQFKGNDTANCSVIGQLGDGVLRA
YTACSQDCADDLNIKREAIDPDLLETLFPFPDGTGGSASGLVNYLRFDGS
SVVMSLRAGFPTFFIEDPRLLKRVQKVGACKLWWHIRSRFAYSVSWCHSS
PLAPRHTHV*
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mRNA from alignment at Contig_138:83475..83954-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13965 ID=mRNA_13965|Name=jgi.p|Trimin1|176511|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=480bp|location=Sequence derived from alignment at Contig_138:83475..83954- (Tribonema minus UTEX_B_3156 )
ATGAAAGGCACAGCACTATTGCTCGTGTGCGGCGCCGCATTTGTCAGCGC
TGCAGTGGACCCCTGTGGATCAGATGTGTGTCAGTTCAAGGGCAACGATA
CGGCGAATTGCAGTGTGATAGGGCAGCTTGGCGATGGCGTCCTCAGAGCG
TACACAGCCTGCTCTCAAGACTGCGCGGATGATCTGAACATCAAACGGGA
AGCGATCGACCCTGATCTGCTGGAGACCCTGTTTCCCTTTCCGGATGGCA
CCGGTGGGTCAGCCTCTGGCCTGGTGAACTACCTCCGATTTGATGGCTCC
AGTGTTGTCATGTCGCTGCGCGCAGGCTTCCCCACATTTTTCATAGAGGA
TCCAAGGTTGTTGAAGAGAGTGCAGAAAGTCGGCGCATGCAAGCTATGGT
GGCACATCAGGTCTAGGTTTGCGTATTCAGTGTCTTGGTGCCACAGTTCG
CCATTGGCGCCAAGGCATACACATGTATGA
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Coding sequence (CDS) from alignment at Contig_138:83475..83954-

>mRNA_13965 ID=mRNA_13965|Name=jgi.p|Trimin1|176511|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=480bp|location=Sequence derived from alignment at Contig_138:83475..83954- (Tribonema minus UTEX_B_3156 )
ATGAAAGGCACAGCACTATTGCTCGTGTGCGGCGCCGCATTTGTCAGCGC
TGCAGTGGACCCCTGTGGATCAGATGTGTGTCAGTTCAAGGGCAACGATA
CGGCGAATTGCAGTGTGATAGGGCAGCTTGGCGATGGCGTCCTCAGAGCG
TACACAGCCTGCTCTCAAGACTGCGCGGATGATCTGAACATCAAACGGGA
AGCGATCGACCCTGATCTGCTGGAGACCCTGTTTCCCTTTCCGGATGGCA
CCGGTGGGTCAGCCTCTGGCCTGGTGAACTACCTCCGATTTGATGGCTCC
AGTGTTGTCATGTCGCTGCGCGCAGGCTTCCCCACATTTTTCATAGAGGA
TCCAAGGTTGTTGAAGAGAGTGCAGAAAGTCGGCGCATGCAAGCTATGGT
GGCACATCAGGTCTAGGTTTGCGTATTCAGTGTCTTGGTGCCACAGTTCG
CCATTGGCGCCAAGGCATACACATGTATGA
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