mRNA_13956 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|176575 vs. uniprot
Match: A0A835Z8Q8_9STRA (Ferredoxin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8Q8_9STRA) HSP 1 Score: 459 bits (1181), Expect = 6.550e-164 Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 1
Query: 1 MRWIGGSVVALSLASCCQGFVPAAVPAGRLCAAAAGPNTAARQKHPRHTCRMAYDVRYSPNSWPNQPLEPGVGGIWPGDPNAQTHKAMRLPLQVTIKNKAGEVVAQMDVPDDRYIYFAFEDEGHDLPLQNGRRMCRNGCCTTCAMHVQEGKVKMEGGLGLLKDLRRDGWTLTCCSYATTDVTLQLQDEDEVYLKQWGETFESGGVEWGGFLPEED 645
MRWIGGSVVALSLASCCQGFVPAAVPAGRLCAAAAGPNTAARQKHPRHTCRMAYDVRYSPNSWPNQPLEPGVGGIWPGDPNAQTHKAMRLPLQVTIKNKAGEVVAQMDVPDDRYIYFAFEDEGHDLPLQNGRRMCRNGCCTTCAMHVQEGKVKMEGGLGLLKDLRRDGWTLTCCSYATTDVTLQLQDEDEVYLKQWGETFESGGVEWGGFLPEED
Sbjct: 1 MRWIGGSVVALSLASCCQGFVPAAVPAGRLCAAAAGPNTAARQKHPRHTCRMAYDVRYSPNSWPNQPLEPGVGGIWPGDPNAQTHKAMRLPLQVTIKNKAGEVVAQMDVPDDRYIYFAFEDEGHDLPLQNGRRMCRNGCCTTCAMHVQEGKVKMEGGLGLLKDLRRDGWTLTCCSYATTDVTLQLQDEDEVYLKQWGETFESGGVEWGGFLPEED 215
BLAST of jgi.p|Trimin1|176575 vs. uniprot
Match: A0A6H5L1Z1_9PHAE (2Fe-2S ferredoxin-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L1Z1_9PHAE) HSP 1 Score: 221 bits (563), Expect = 1.540e-69 Identity = 119/221 (53.85%), Postives = 149/221 (67.42%), Query Frame = 1
Query: 1 MRWIGGSVVALSLASCCQGFVPAAVPAGRLC---AAAAGPNTAARQKHPRHTCRMAYDVRYSPNSWPNQP-LEPGVGGIWPGDPNAQTHKAMRLPLQVTIKNKAGEVVAQMDVPDDRYIYFAFEDEGHDLPLQNGRRMCRNGCCTTCAMHVQEGK--VKMEGGLGLLKDLRRDGWTLTCCSYATTDVTLQLQDEDEVYLKQWGETFESGGVEWGGFLPEED 645
MR G++V L +A + F+ A G +C AAA T+A MAYDV+YSPN W ++ + PG GGIWPGDP+A+TH VT NKAGE VA DVP DRYI+FA ED G D+P+ N +RMCRNGCCTTCA+ V EGK VK EG LGLLK+LR++G+ LTCCSY +D+ +QLQ+ED+VY+KQ+G FE GGVEWGGF +ED
Sbjct: 28 MRARAGALVWLLMAVQSRAFLVAPAVGGGVCRPRAAAGAARTSAASP------LMAYDVKYSPNKWWDEDDIVPGFGGIWPGDPDAETH-------HVTYVNKAGEEVASADVPVDRYIFFATEDAGVDVPIINKKRMCRNGCCTTCAVKVLEGKARVKQEGALGLLKNLRQEGYALTCCSYPKSDLVVQLQEEDDVYMKQFGNDFEGGGVEWGGFFLDED 235
BLAST of jgi.p|Trimin1|176575 vs. uniprot
Match: A0A4D9CSH6_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CSH6_9STRA) HSP 1 Score: 220 bits (560), Expect = 2.460e-69 Identity = 102/178 (57.30%), Postives = 129/178 (72.47%), Query Frame = 1
Query: 118 AARQKHPRHTCRMAYDVRYSPNSWPN--QPLEPGVGGIWPGDPNAQTHKAMRLPLQVTIKNKAGEVVAQMDVPDDRYIYFAFEDEGHDLPLQNGRRMCRNGCCTTCAMHVQEGKVKMEGGLGLLKDLRRDGWTLTCCSYATTDVTLQLQDEDEVYLKQWGETFESGGVEWGGFLPEED 645
AA P + ++ SPN W QPLEPGVGGIWPG P+A+ +K VT+ + + MDVP+DRYI+FAFED G DLP+ NG+RMCRNGCCTTCA+ ++EGKVKME LGLL+D++ G+ L+CCS +D+ +LQDEDEVY++QWGETFESGGVEWGGFLPE+D
Sbjct: 47 AALHASPPKRLTVTEQLQLSPNRWKRNGQPLEPGVGGIWPGKPDAKKYK-------VTVVDPRTKTNYTMDVPEDRYIFFAFEDSGVDLPMVNGKRMCRNGCCTTCAVKMKEGKVKMEAALGLLRDMKNKGYALSCCSLPRSDIVCELQDEDEVYVRQWGETFESGGVEWGGFLPEDD 217
BLAST of jgi.p|Trimin1|176575 vs. uniprot
Match: A0A7S2V5A4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5A4_9STRA) HSP 1 Score: 211 bits (538), Expect = 1.820e-65 Identity = 103/181 (56.91%), Postives = 127/181 (70.17%), Query Frame = 1
Query: 109 PNTAARQKHPRHTCRMAYDVRYSPNSWPNQ-PLEPGVGGIWPGDPNAQTHKAMRLPLQVTIKN-KAGEVVAQMDVPDDRYIYFAFEDEGHDLPLQNGRRMCRNGCCTTCAMHVQEGKVKMEGGLGLLKDLRRDGWTLTCCSYATTDVTLQLQDEDEVYLKQWGETFESGGVEWGGFLPEED 645
P++ PR + AYD R SPN W P+EPG GG WPGDPNA T V ++N GE V +MDVP DRYIYFAFED G +LPL N R CRNGCCTTCA+ +EGK+KM+ LGLLK++++ G+ L CCSY +D+ +++Q EDEVY KQWG+TFESGGVEWGGFLPE+D
Sbjct: 84 PSSKQESSTPRVPIKSAYDWRTSPNKWGRGIPIEPGFGGPWPGDPNAPT-------FNVKVRNVDTGEEV-EMDVPADRYIYFAFEDAGIELPLINKERACRNGCCTTCAVKTKEGKMKMDPQLGLLKEMKKQGYGLLCCSYPRSDLVVEVQKEDEVYRKQWGDTFESGGVEWGGFLPEDD 256
BLAST of jgi.p|Trimin1|176575 vs. uniprot
Match: A0A7S3YL42_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YL42_HETAK) HSP 1 Score: 192 bits (489), Expect = 1.550e-58 Identity = 94/168 (55.95%), Postives = 118/168 (70.24%), Query Frame = 1
Query: 160 YDVRYSPNSWP--NQPLEPGVGGIWPGDPNAQTHKAMRLPLQVTIKN-KAGEVVAQMDVPDDRYIYFAFEDEGHDLPL---QNGRRMCRNGCCTTCAMHVQEGKVKMEGGLGLLKDLRRDGWTLTCCSYATTDVTLQLQDEDEVYLKQWGETFESGGVEWGGFLPEED 645
YD R SPN W ++P EPG GG WPGDPNA K VT+KN G V M VP DRYI+F FE++ +P+ Q G RMCRNGCCTTCA+ V EGKVK + +GL+K+LR++G+ L CC+Y +D+ L++ EDE Y+KQWGE+FESGGVEWGGFLPE+D
Sbjct: 61 YDWRRSPNKWTVTDKPAEPGFGGPWPGDPNAPKFK-------VTVKNVDEGTEVTHM-VPIDRYIFFQFEEDDIPVPIISGQRGERMCRNGCCTTCAVKVVEGKVKQDAQIGLMKELRKEGYALMCCAYPRSDLVLEVTAEDECYIKQWGESFESGGVEWGGFLPEDD 220
BLAST of jgi.p|Trimin1|176575 vs. uniprot
Match: A0A482T133_9ARCH (2Fe-2S iron-sulfur cluster binding domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T133_9ARCH) HSP 1 Score: 189 bits (481), Expect = 1.390e-57 Identity = 88/149 (59.06%), Postives = 109/149 (73.15%), Query Frame = 1
Query: 202 LEPGVGGIWPGDPNAQTHKAMRLPLQVTIKNK-AGEVVAQMDVPDDRYIYFAFEDEGHDLPLQNGRRMCRNGCCTTCAMHVQEGKVKMEGGLGLLKDLRRDGWTLTCCSYATTDVTLQLQDEDEVYLKQWGETFESGGVEWGGFLPEED 645
+PGVGGIWPGDP+A+ + QVT+K+K GE QM VP+DRYIYF FE++G +LP+ N RMCR GCCT C + V EGKVKM+ LGLLK+ R DG+ L+CC+Y +DV +LQDEDE+Y+KQW E FE GGV WGG LPE D
Sbjct: 61 FKPGVGGIWPGDPSAKKY-------QVTVKSKKTGEEFVQM-VPEDRYIYFYFEEQGVELPIHNKARMCRQGCCTICTVKVSEGKVKMDAPLGLLKEFRNDGYALSCCAYPKSDVVCELQDEDEMYIKQWAEGFEGGGVIWGGVLPEHD 201
BLAST of jgi.p|Trimin1|176575 vs. uniprot
Match: W7TUL4_9STRA (Ferredoxin (2fe-2s) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TUL4_9STRA) HSP 1 Score: 172 bits (435), Expect = 2.110e-50 Identity = 82/155 (52.90%), Postives = 106/155 (68.39%), Query Frame = 1
Query: 118 AARQKHPRHTCRMAYDVRYSPNSWPN--QPLEPGVGGIWPGDPNAQTHKAMRLPLQVTIKNKAGEVVAQMDVPDDRYIYFAFEDEGHDLPLQNGRRMCRNGCCTTCAMHVQEGKVKMEGGLGLLKDLRRDGWTLTCCSYATTDVTLQLQDEDEVY 576
AA P + ++ SPN W QPLEPGVGGIWPG P+A+ +K VT+ + + MDVP+DRYI+FAFED G DLP+ NG+RMCRNGCCTTCA+ ++EGKVKME LGLL+D++ G+ L+CCS +D+ +LQDEDEVY
Sbjct: 47 AALHASPPKRLTVTEQLQLSPNRWKRNGQPLEPGVGGIWPGKPDAKKYK-------VTVVDPRTKTNYTMDVPEDRYIFFAFEDSGVDLPMVNGKRMCRNGCCTTCAVKMKEGKVKMEAALGLLRDMKNKGYALSCCSLPRSDIVCELQDEDEVY 194
BLAST of jgi.p|Trimin1|176575 vs. uniprot
Match: A0A0G4HZN2_9ALVE (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HZN2_9ALVE) HSP 1 Score: 157 bits (396), Expect = 4.080e-44 Identity = 74/162 (45.68%), Postives = 110/162 (67.90%), Query Frame = 1
Query: 160 YDVRYSPNSWPNQPLEPGVGGIWPGDPNAQTHKAMRLPLQVTIKNKAGEVVAQMDVPDDRYIYFAFEDEGHDLPLQNGRRMCRNGCCTTCAMHVQEGKVKMEGGLGLLKDLRRDGWTLTCCSYATTDVTLQLQDEDEVYLKQWGETFESGGVEWGGFLPEED 645
+D+ SP W Q L P GG +PGDP+A+ + I +K GE + +DV +DRYI+FAFE+ G LP++N ++MCRNGCCTTC + ++EG V+M+ +GL+K++ ++G+ L+C S +DV + QDEDEVY+KQW E+FE G V++G +P ED
Sbjct: 98 FDLNKSPMRWQGQTLVPPKGGAFPGDPDAKKYNV------TLIDSKTGESYS-LDVAEDRYIFFAFEEAGIKLPIRNIKKMCRNGCCTTCTVRMREGDVEMDPQIGLVKEMTKNGYRLSCVSMPRSDVVAEFQDEDEVYVKQWAESFEKGKVDFG--IPIED 250
BLAST of jgi.p|Trimin1|176575 vs. uniprot
Match: A0A0G4ELQ0_VITBC (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4ELQ0_VITBC) HSP 1 Score: 152 bits (383), Expect = 8.740e-42 Identity = 76/162 (46.91%), Postives = 106/162 (65.43%), Query Frame = 1
Query: 163 DVRYSPNSWP-NQPLEPGVGGIWPGDPNAQTHKAMRLPLQVTIKNKAGEVVAQMDVPDDRYIYFAFEDEGHDLPLQNGRRMCRNGCCTTCAMHVQEGKVKMEGGLGLLKDLRRDGWTLTCCSYATTDVTLQLQDEDEVYLKQWGETFESGGVEWGGFLPEED 645
D +P W ++P GG WPGDPNA+T+K VTI + DVP+DRYI+F+FE+ + P++N ++MCRNGCCTTCA+ V+EG+VKM+ +GL +++ R G+ LTC SY +DV L+LQDEDEVY KQ+G+TF+S +P ED
Sbjct: 129 DADDTPMKWEMGDRIKPYKGGPWPGDPNAKTYK-------VTIIDPVSGERHTQDVPEDRYIFFSFEESRNLPPIKNIKKMCRNGCCTTCAVRVREGEVKMDPQIGLTREMERAGYALTCVSYPRSDVVLELQDEDEVYKKQFGDTFDSMSKNPTWEIPIED 283
BLAST of jgi.p|Trimin1|176575 vs. uniprot
Match: A0A2V3IXT2_9FLOR (Ferredoxin-2 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IXT2_9FLOR) HSP 1 Score: 144 bits (364), Expect = 3.170e-40 Identity = 75/160 (46.88%), Postives = 99/160 (61.88%), Query Frame = 1
Query: 184 SWPNQPLEPGV------GGIWPGDPNAQTHKAMRLPLQVTIKNKAGEVVAQMDVPDDRYIYFAFEDEGHDLPLQNGRRMCRNGCCTTCAMHVQEGKVKMEGGLGLLKDLRRDGWTLTCCSYATTDVTLQLQDEDEVYLKQWGETFESGGVEWGGFLPEED 645
S P PL P G +P P A+T+ QV I++ +V VP+DRYI+ + D+G DLP CRNGCCTTCA+ + G+V+ E LGLLKD+R G+ L C SYA +D+ LQ +DEVY+KQ+G +FESGGVEWGGF+PE+D
Sbjct: 30 SSPLTPLNPSETRIKKRDGSFPSRPGAKTY-------QVKIEDPRKGIVHTYTVPEDRYIWHSITDQGADLPAS-----CRNGCCTTCAVKMSTGEVQQEEALGLLKDMRAKGYALLCVSYARSDIDCVLQGKDEVYVKQFGSSFESGGVEWGGFVPEDD 177 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|176575 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_13956 ID=mRNA_13956|Name=jgi.p|Trimin1|176575|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=648bp|location=Sequence derived from alignment at Contig_138:21789..24047- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGAGGTGGATAGGAGGCAGCGTCGTGGCGCTGTCGCTGGCGTCCTGCTGback to top protein sequence of jgi.p|Trimin1|176575 >Trimin1|176575|e_gw1.138.70.1 ID=Trimin1|176575|e_gw1.138.70.1|Name=jgi.p|Trimin1|176575|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=216bp MRWIGGSVVALSLASCCQGFVPAAVPAGRLCAAAAGPNTAARQKHPRHTCback to top mRNA from alignment at Contig_138:21789..24047- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_13956 ID=mRNA_13956|Name=jgi.p|Trimin1|176575|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2259bp|location=Sequence derived from alignment at Contig_138:21789..24047- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_138:21789..24047- >mRNA_13956 ID=mRNA_13956|Name=jgi.p|Trimin1|176575|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=648bp|location=Sequence derived from alignment at Contig_138:21789..24047- (Tribonema minus UTEX_B_3156 )back to top |