mRNA_13950 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|175184
Unique NamemRNA_13950
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|175184 vs. uniprot
Match: A0A835ZET1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZET1_9STRA)

HSP 1 Score: 217 bits (552), Expect = 2.220e-71
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 1 
Query:    1 MLVLTVDEIYYLRGRSDSVLQALFGWACAPNSRLILIGVANGINFTEKADLGVPSDAVKSVVFPTYTAKQLEEIVATRAGSVFQPRATELCVKRTATYSGDARIALQLAQSA 336
            MLVLTVDEIYYLRGRSDSVLQALFGWACAPNSRLILIGVANGINFTEKADLGVPSDAVKSVVFPTYTAKQLEEIVATRAGSVFQPRATELCVKRTATYSGDARIALQLAQSA
Sbjct:    1 MLVLTVDEIYYLRGRSDSVLQALFGWACAPNSRLILIGVANGINFTEKADLGVPSDAVKSVVFPTYTAKQLEEIVATRAGSVFQPRATELCVKRTATYSGDARIALQLAQSA 112
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BLAST of jgi.p|Trimin1|175184 vs. uniprot
Match: A0A835Z562_9STRA (AAA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z562_9STRA)

HSP 1 Score: 182 bits (462), Expect = 5.830e-54
Identity = 93/112 (83.04%), Postives = 100/112 (89.29%), Query Frame = 1 
Query:    1 MLVLTVDEIYYLRGRSDSVLQALFGWACAPNSRLILIGVANGINFTEKADLGVPSDAVKSVVFPTYTAKQLEEIVATRAGSVFQPRATELCVKRTATYSGDARIALQLAQSA 336
            MLVLT+DE+ YLRGR D VLQALFGWACAPNSRLILIGVANGINFT+KADLGVPSDAVK++VFPTYTA QL+EIVA RAGSVFQPRA  +CVKR A  SGDAR  LQLAQSA
Sbjct:  115 MLVLTIDEVNYLRGRGDPVLQALFGWACAPNSRLILIGVANGINFTKKADLGVPSDAVKTLVFPTYTAAQLKEIVAVRAGSVFQPRAAAVCVKRVAARSGDAREMLQLAQSA 226
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BLAST of jgi.p|Trimin1|175184 vs. uniprot
Match: A0A835YJC9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJC9_9STRA)

HSP 1 Score: 171 bits (432), Expect = 3.680e-50
Identity = 85/112 (75.89%), Postives = 94/112 (83.93%), Query Frame = 1 
Query:    1 MLVLTVDEIYYLRGRSDSVLQALFGWACAPNSRLILIGVANGINFTEKADLGVPSDAVKSVVFPTYTAKQLEEIVATRAGSVFQPRATELCVKRTATYSGDARIALQLAQSA 336
            MLVLT++E+ YLRGR D+VLQALFGWACAPNSRL+LIGVAN IN TE AD+GVPSDAVKSV+FPTYTA QLEEI+  RAG +F PRA  LC KR A  SGDAR ALQLAQ A
Sbjct:  138 MLVLTIEEVNYLRGRGDAVLQALFGWACAPNSRLVLIGVANNINLTETADIGVPSDAVKSVLFPTYTAVQLEEILTARAGGIFDPRAAALCAKRVAVRSGDARDALQLAQGA 249
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BLAST of jgi.p|Trimin1|175184 vs. uniprot
Match: A0A835YIZ8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIZ8_9STRA)

HSP 1 Score: 169 bits (427), Expect = 6.370e-48
Identity = 85/112 (75.89%), Postives = 93/112 (83.04%), Query Frame = 1 
Query:    1 MLVLTVDEIYYLRGRSDSVLQALFGWACAPNSRLILIGVANGINFTEKADLGVPSDAVKSVVFPTYTAKQLEEIVATRAGSVFQPRATELCVKRTATYSGDARIALQLAQSA 336
            MLVLT++E+ YLRGR D+VLQALFGWACAPNSRL+LIGVAN IN TE AD+GVPSDAV SV+FPTYTA QLEEI+  RAG VF PRA  LC KR A  SGDAR ALQLAQ A
Sbjct:  212 MLVLTIEEVNYLRGRGDAVLQALFGWACAPNSRLVLIGVANNINLTETADIGVPSDAVTSVLFPTYTAVQLEEILTARAGGVFDPRAAALCAKRVAVRSGDARDALQLAQGA 323
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BLAST of jgi.p|Trimin1|175184 vs. uniprot
Match: D7FJK0_ECTSI (AAA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJK0_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 1.560e-14
Identity = 44/112 (39.29%), Postives = 63/112 (56.25%), Query Frame = 1 
Query:    1 MLVLTVDEIYYLRGRSDSVLQALFGWACAPNSRLILIGVANGINFTEKADLGVPSDAVKSVVFPTYTAKQLEEIVATRAGSVFQPRATELCVKRTATYSGDARIALQLAQSA 336
            MLV+ +DEI  L   +  VL+ LF WA AP SRL+L+G+AN ++F           A + ++F +YT + L  I+  R GS   P A + C K+ A  +GDAR AL   + A
Sbjct:  676 MLVVVLDEIDQLMTENRQVLRKLFQWADAPKSRLVLVGLANSLDFN--ISFSGLKKAPQRLLFQSYTPEDLASILTERVGSTVHPSAIQFCAKKAAATTGDARRALNTCREA 785
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BLAST of jgi.p|Trimin1|175184 vs. uniprot
Match: A0A852K9A9_UROIN (CDC6 protein (Fragment) n=1 Tax=Urocolius indicus TaxID=458196 RepID=A0A852K9A9_UROIN)

HSP 1 Score: 75.1 bits (183), Expect = 5.890e-14
Identity = 44/120 (36.67%), Postives = 69/120 (57.50%), Query Frame = 1 
Query:    1 MLVLTVDEIYYLRGRSDSVLQALFGWACAPNSRLILIGVANGINFTEK--ADLGV-PSDAVKSVVFPTYTAKQLEEIVATRAGSV-----FQPRATELCVKRTATYSGDARIALQLAQSA 336
            M++L +DE+  L  +   VL  LF W+  PNSRL+L+G+AN ++ T++  A LG  P+ + + + FP YT +QL  I+  R G V         A + C ++ +  SGDAR AL + + A
Sbjct:  125 MVLLVLDELDQLESKGQDVLYTLFEWSRLPNSRLVLVGLANTLDLTDRGLARLGAHPAGSPRLLHFPPYTREQLSTILQERLGQVAGDPVLDAAALQFCARKVSAVSGDARKALDVCRRA 244
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BLAST of jgi.p|Trimin1|175184 vs. uniprot
Match: A0A7K6N4E0_PEDTO (CDC6 protein (Fragment) n=1 Tax=Pedionomus torquatus TaxID=227192 RepID=A0A7K6N4E0_PEDTO)

HSP 1 Score: 72.4 bits (176), Expect = 7.000e-14
Identity = 42/116 (36.21%), Postives = 66/116 (56.90%), Query Frame = 1 
Query:    7 VLTVDEIYYLRGRSDSVLQALFGWACAPNSRLILIGVANGINFTEK--ADLGV-PSDAVKSVVFPTYTAKQLEEIVATR---AGSVFQPRATELCVKRTATYSGDARIALQLAQSA 336
            +L +DE+  L  +   VL  LF W   P SRL+L+G+AN ++ T++  A LG  P+   + + FP YT +QL  I+  R    G+V +  A + C ++ +  SGDAR AL + + A
Sbjct:    4 LLVLDELDQLESKGQDVLYTLFEWPRMPGSRLVLVGLANALDLTDRSLARLGAHPAGGPRLLHFPPYTKEQLSAILQERLGQVGTVLEAAALQFCARKVSAVSGDARKALDVCRRA 119
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BLAST of jgi.p|Trimin1|175184 vs. uniprot
Match: A0A7K7GM24_ERIRU (CDC6 protein (Fragment) n=3 Tax=Passeriformes TaxID=9126 RepID=A0A7K7GM24_ERIRU)

HSP 1 Score: 74.7 bits (182), Expect = 1.090e-13
Identity = 44/120 (36.67%), Postives = 68/120 (56.67%), Query Frame = 1 
Query:    1 MLVLTVDEIYYLRGRSDSVLQALFGWACAPNSRLILIGVANGINFTEK--ADLGV-PSDAVKSVVFPTYTAKQLEEIVATRAGSV-----FQPRATELCVKRTATYSGDARIALQLAQSA 336
            M++L +DE+  L  +   VL  LF W   PNSRL+L+G+AN ++ T++  A LG  P+ + + + FP YT +QL  I+  R G V         A + C ++ +  SGDAR AL + + A
Sbjct:  150 MVLLVLDELDQLESKGQDVLYTLFEWPQLPNSRLVLVGLANALDLTDRSLARLGAHPAGSPQLLHFPPYTKEQLTRILQERLGQVAGDPVLDSAALQFCARKVSAVSGDARKALDVCRRA 269
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BLAST of jgi.p|Trimin1|175184 vs. uniprot
Match: A0A7K9ECZ2_BARMA (CDC6 protein (Fragment) n=1 Tax=Baryphthengus martii TaxID=176943 RepID=A0A7K9ECZ2_BARMA)

HSP 1 Score: 73.9 bits (180), Expect = 1.600e-13
Identity = 43/120 (35.83%), Postives = 68/120 (56.67%), Query Frame = 1 
Query:    1 MLVLTVDEIYYLRGRSDSVLQALFGWACAPNSRLILIGVANGINFTEK--ADLGV-PSDAVKSVVFPTYTAKQLEEIVATRAGSV-----FQPRATELCVKRTATYSGDARIALQLAQSA 336
            M++L +DE+  L  +   VL  LF W   P+SRL+L+G+AN ++ T++  A LG  P+ + + + FP YT +QL  I+  R G V         A + C ++ +  SGDAR AL + + A
Sbjct:  125 MVLLVLDELDQLESKGQDVLYTLFEWTRLPHSRLVLVGLANALDLTDRSLARLGAHPAGSPRLLHFPPYTREQLSAILTDRLGQVAGDPVLDAAALQFCARKVSAVSGDARKALDVCRRA 244
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BLAST of jgi.p|Trimin1|175184 vs. uniprot
Match: D8RWX8_SELML (Origin recognition complex subunit 1 (Fragment) n=8 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RWX8_SELML)

HSP 1 Score: 75.1 bits (183), Expect = 1.830e-13
Identity = 47/113 (41.59%), Postives = 66/113 (58.41%), Query Frame = 1 
Query:    7 VLTVDEIYYLRGRSDSVLQALFGWACAPNSRLILIGVANGINFTEKADLGVPSD-AVKSVVFPTYTAKQLEEIVATRAGSV--FQPRATELCVKRTATYSGDARIALQLAQSA 336
            +L VDE+  L  RS SVL  LF W C PNSRL++IG+AN I+  E+    + S   ++ V F  Y+  QL+EI++ R      F+  A E   ++ A  SGDAR AL+L + A
Sbjct:  446 ILLVDELDLLVTRSQSVLYNLFDWPCRPNSRLMVIGIANTIDLPERLLPRIASRMGLQRVSFSPYSYIQLQEIISFRLSGTEAFEKAAVEFASRKVAAVSGDARRALELCRRA 558
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|175184 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZET1_9STRA2.220e-71100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835Z562_9STRA5.830e-5483.04AAA domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A835YJC9_9STRA3.680e-5075.89Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YIZ8_9STRA6.370e-4875.89Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FJK0_ECTSI1.560e-1439.29AAA domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A852K9A9_UROIN5.890e-1436.67CDC6 protein (Fragment) n=1 Tax=Urocolius indicus ... [more]
A0A7K6N4E0_PEDTO7.000e-1436.21CDC6 protein (Fragment) n=1 Tax=Pedionomus torquat... [more]
A0A7K7GM24_ERIRU1.090e-1336.67CDC6 protein (Fragment) n=3 Tax=Passeriformes TaxI... [more]
A0A7K9ECZ2_BARMA1.600e-1335.83CDC6 protein (Fragment) n=1 Tax=Baryphthengus mart... [more]
D8RWX8_SELML1.830e-1341.59Origin recognition complex subunit 1 (Fragment) n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_122contigContig_122:401116..401451 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|175184|e_gw1.122.26.1
BRITEko00000,ko00001,ko00002,ko03032,ko03036,ko04147
KEGG ModuleM00284
KEGG Pathwayko04110,ko04111,ko04113,map04110,map04111,map04113
KEGG koko:K02603,ko:K18260
GOsGO:0000082,GO:0000083,GO:0000228,GO:0000278,GO:0000808,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005664,GO:0005694,GO:0005730,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006277,GO:0006355,GO:0006725,GO:0006807,GO:0007049,GO:0008150,GO:0008152,GO:0008283,GO:0008284,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0010564,GO:0016020,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022402,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0042127,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044770,GO:0044772,GO:0044843,GO:0045787,GO:0046483,GO:0048518,GO:0048522,GO:0048660,GO:0048661,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0051726,GO:0060255,GO:0065007,GO:0070013,GO:0070316,GO:0070318,GO:0071704,GO:0071897,GO:0071944,GO:0080090,GO:0090068,GO:0090304,GO:0097159,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1903047,GO:1903506,GO:2000112,GO:2001141
Preferred nameORC1
DescriptionDNA replication
COG categoryLO
Max annot lvl2759|Eukaryota
EggNOG OGsCOG1474@1|root,KOG1514@2759|Eukaryota
Evalue7.22e-16
Seed ortholog529818.AMSG_01130T0
Hectar predicted targeting categoryother localisation
TranscriptId175506
TrackFilteredModels1
ProteinId175184
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|175184gene_13950Tribonema minus UTEX_B_3156 geneContig_122 401116..401451 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13950_1exon_13950_1Tribonema minus UTEX_B_3156 exonContig_122 401116..401451 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13950CDS_13950Tribonema minus UTEX_B_3156 CDSContig_122 401116..401451 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|175184Trimin1|175184|e_gw1.122.26.1Tribonema minus UTEX_B_3156 polypeptideContig_122 401116..401451 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13950 ID=mRNA_13950|Name=jgi.p|Trimin1|175184|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=336bp|location=Sequence derived from alignment at Contig_122:401116..401451- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGGTGCTGACGGTCGACGAGATCTACTACCTGCGAGGCCGCAGCGA
TTCCGTGCTGCAGGCCCTGTTTGGCTGGGCATGCGCGCCCAACTCTCGCC
TCATTCTCATTGGCGTCGCCAACGGCATCAACTTCACCGAGAAAGCGGAC
CTCGGCGTTCCTAGCGACGCTGTGAAGAGCGTAGTGTTCCCCACGTACAC
GGCTAAGCAGCTCGAGGAGATAGTGGCGACGCGCGCCGGCAGTGTGTTCC
AGCCACGCGCCACAGAATTGTGCGTCAAGAGGACGGCGACGTACAGCGGC
GATGCACGCATCGCGCTGCAGCTGGCGCAGAGCGCT
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protein sequence of jgi.p|Trimin1|175184

>Trimin1|175184|e_gw1.122.26.1 ID=Trimin1|175184|e_gw1.122.26.1|Name=jgi.p|Trimin1|175184|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=112bp
MLVLTVDEIYYLRGRSDSVLQALFGWACAPNSRLILIGVANGINFTEKAD
LGVPSDAVKSVVFPTYTAKQLEEIVATRAGSVFQPRATELCVKRTATYSG
DARIALQLAQSA
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mRNA from alignment at Contig_122:401116..401451-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13950 ID=mRNA_13950|Name=jgi.p|Trimin1|175184|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=336bp|location=Sequence derived from alignment at Contig_122:401116..401451- (Tribonema minus UTEX_B_3156 )
ATGCTGGTGCTGACGGTCGACGAGATCTACTACCTGCGAGGCCGCAGCGA
TTCCGTGCTGCAGGCCCTGTTTGGCTGGGCATGCGCGCCCAACTCTCGCC
TCATTCTCATTGGCGTCGCCAACGGCATCAACTTCACCGAGAAAGCGGAC
CTCGGCGTTCCTAGCGACGCTGTGAAGAGCGTAGTGTTCCCCACGTACAC
GGCTAAGCAGCTCGAGGAGATAGTGGCGACGCGCGCCGGCAGTGTGTTCC
AGCCACGCGCCACAGAATTGTGCGTCAAGAGGACGGCGACGTACAGCGGC
GATGCACGCATCGCGCTGCAGCTGGCGCAGAGCGCT
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Coding sequence (CDS) from alignment at Contig_122:401116..401451-

>mRNA_13950 ID=mRNA_13950|Name=jgi.p|Trimin1|175184|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=336bp|location=Sequence derived from alignment at Contig_122:401116..401451- (Tribonema minus UTEX_B_3156 )
ATGCTGGTGCTGACGGTCGACGAGATCTACTACCTGCGAGGCCGCAGCGA
TTCCGTGCTGCAGGCCCTGTTTGGCTGGGCATGCGCGCCCAACTCTCGCC
TCATTCTCATTGGCGTCGCCAACGGCATCAACTTCACCGAGAAAGCGGAC
CTCGGCGTTCCTAGCGACGCTGTGAAGAGCGTAGTGTTCCCCACGTACAC
GGCTAAGCAGCTCGAGGAGATAGTGGCGACGCGCGCCGGCAGTGTGTTCC
AGCCACGCGCCACAGAATTGTGCGTCAAGAGGACGGCGACGTACAGCGGC
GATGCACGCATCGCGCTGCAGCTGGCGCAGAGCGCT
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