mRNA_13945 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|13256
Unique NamemRNA_13945
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|13256 vs. uniprot
Match: A0A835ZAL7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAL7_9STRA)

HSP 1 Score: 141 bits (356), Expect = 3.200e-42
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 2 
Query:   35 MWLRTRLCSHLLPFCKLVYSRQPEAASKLYLGLSRYRTLVSRLQLSGCCGLSHSLQEASSTTSTSTKSRRR 247
            MWLRTRLCSHLLPFCKLVYSRQPEAASKLYLGLSRYRTLVSRLQLSGCCGLSHSLQEASSTTSTSTKSRRR
Sbjct:    1 MWLRTRLCSHLLPFCKLVYSRQPEAASKLYLGLSRYRTLVSRLQLSGCCGLSHSLQEASSTTSTSTKSRRR 71
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|13256 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835ZAL7_9STRA3.200e-42100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_122contigContig_122:356663..356968 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|13256|CE13255_4
Hectar predicted targeting categorysignal peptide
TranscriptId13578
TrackFilteredModels1
ProteinId13256
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|13256gene_13945Tribonema minus UTEX_B_3156 geneContig_122 356663..356968 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13945_1exon_13945_1Tribonema minus UTEX_B_3156 exonContig_122 356663..356968 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_13945UTR5_13945Tribonema minus UTEX_B_3156 five_prime_UTRContig_122 356663..356696 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13945CDS_13945Tribonema minus UTEX_B_3156 CDSContig_122 356697..356912 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_13945UTR3_13945Tribonema minus UTEX_B_3156 three_prime_UTRContig_122 356913..356968 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|13256Trimin1|13256|CE13255_4Tribonema minus UTEX_B_3156 polypeptideContig_122 356697..356912 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13945 ID=mRNA_13945|Name=jgi.p|Trimin1|13256|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=306bp|location=Sequence derived from alignment at Contig_122:356663..356968+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAAAGCTGGCACTACAGTAACTACTGGTAGTAGTATGTGGCTGCGCACGC
GGTTGTGCTCGCATTTGCTACCATTTTGCAAGCTTGTGTATAGCCGGCAG
CCTGAGGCAGCTTCCAAGCTGTACCTCGGCCTGAGTCGGTACAGAACCTT
AGTCAGCCGGCTGCAGCTCAGCGGCTGCTGTGGCCTGTCACATAGTTTGC
AAGAGGCTAGTAGTACGACTAGCACCAGTACAAAGAGCAGGCGGCGGTGA
TAATGCTACTATAATAGTAGTACTAGAGATTATTTCCAGCCCTGAACAAA
TGCTGG
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protein sequence of jgi.p|Trimin1|13256

>Trimin1|13256|CE13255_4 ID=Trimin1|13256|CE13255_4|Name=jgi.p|Trimin1|13256|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=72bp
MWLRTRLCSHLLPFCKLVYSRQPEAASKLYLGLSRYRTLVSRLQLSGCCG
LSHSLQEASSTTSTSTKSRRR*
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mRNA from alignment at Contig_122:356663..356968+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13945 ID=mRNA_13945|Name=jgi.p|Trimin1|13256|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=306bp|location=Sequence derived from alignment at Contig_122:356663..356968+ (Tribonema minus UTEX_B_3156 )
CAAAGCTGGCACTACAGTAACTACTGGTAGTAGTATGTGGCTGCGCACGC
GGTTGTGCTCGCATTTGCTACCATTTTGCAAGCTTGTGTATAGCCGGCAG
CCTGAGGCAGCTTCCAAGCTGTACCTCGGCCTGAGTCGGTACAGAACCTT
AGTCAGCCGGCTGCAGCTCAGCGGCTGCTGTGGCCTGTCACATAGTTTGC
AAGAGGCTAGTAGTACGACTAGCACCAGTACAAAGAGCAGGCGGCGGTGA
TAATGCTACTATAATAGTAGTACTAGAGATTATTTCCAGCCCTGAACAAA
TGCTGG
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Coding sequence (CDS) from alignment at Contig_122:356663..356968+

>mRNA_13945 ID=mRNA_13945|Name=jgi.p|Trimin1|13256|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=216bp|location=Sequence derived from alignment at Contig_122:356663..356968+ (Tribonema minus UTEX_B_3156 )
ATGTGGCTGCGCACGCGGTTGTGCTCGCATTTGCTACCATTTTGCAAGCT
TGTGTATAGCCGGCAGCCTGAGGCAGCTTCCAAGCTGTACCTCGGCCTGA
GTCGGTACAGAACCTTAGTCAGCCGGCTGCAGCTCAGCGGCTGCTGTGGC
CTGTCACATAGTTTGCAAGAGGCTAGTAGTACGACTAGCACCAGTACAAA
GAGCAGGCGGCGGTGA
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