mRNA_1393 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|130713
Unique NamemRNA_1393
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|130713 vs. uniprot
Match: A0A835Z671_9STRA (Histidine kinase-like ATPase n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z671_9STRA)

HSP 1 Score: 437 bits (1124), Expect = 8.810e-155
Identity = 219/222 (98.65%), Postives = 220/222 (99.10%), Query Frame = 1
Query:    1 ANSMLSYVNHEVRNPLNVIKGMVEYTLLTLEQCALPPELGTCVADLTVASRACDFLEHIVSDILVLQRLEAGALVLNPHPHRVSDIVEDMREAVRHKMEEKKNVVLIIECPTDITAVVDAFRLKQILLNFLSNSMKYTDQGSITVRVTKHDSGEITIGVLDTGSGIPETHQKLIFQAHVQLDADDVGRHGSHGLGLYLVSMLAQRMNWTVGFHSTVGVGSHF 666
            ANSMLSYVNHEVRNPLNVIKGMVEYTLLTLEQCALPPELGTCVADLTVASRACDFLEHIVSDILVLQRLEAGALVLN HPHRVSDIVEDMREAVRHKMEEKKNVVLIIECPTDITAVVDAF LKQILLNFLSNSMKYTDQGSITVRVTKHDSGEITIGVLDTGSGIPETHQKLIFQAHVQLDADD+GRHGSHGLGLYLVSMLAQRMNWTVGFHSTVGVGSHF
Sbjct:    9 ANSMLSYVNHEVRNPLNVIKGMVEYTLLTLEQCALPPELGTCVADLTVASRACDFLEHIVSDILVLQRLEAGALVLNLHPHRVSDIVEDMREAVRHKMEEKKNVVLIIECPTDITAVVDAFGLKQILLNFLSNSMKYTDQGSITVRVTKHDSGEITIGVLDTGSGIPETHQKLIFQAHVQLDADDIGRHGSHGLGLYLVSMLAQRMNWTVGFHSTVGVGSHF 230          
BLAST of jgi.p|Trimin1|130713 vs. uniprot
Match: A0A836CM12_9STRA (Histidine kinase-like ATPase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM12_9STRA)

HSP 1 Score: 312 bits (800), Expect = 8.990e-106
Identity = 150/209 (71.77%), Postives = 178/209 (85.17%), Query Frame = 1
Query:    4 NSMLSYVNHEVRNPLNVIKGMVEYTLLTLEQCALPPELGTCVADLTVASRACDFLEHIVSDILVLQRLEAGALVLNPHPHRVSDIVEDMREAVRHKMEEKKNVVLIIECPTDITAVVDAFRLKQILLNFLSNSMKYTDQGSITVRVTKHDSGEITIGVLDTGSGIPETHQKLIFQAHVQLDADDVGRHGSHGLGLYLVSMLAQRMNWTV 630
            N MLSYVNH+VRNPLNVIKGMV+ T+LTL QC LPPEL TC+ DLT+ASRACDFLEHIVS ILV+QR EAGAL+LN  P+R+SDIV DM+ A+ HKMEE K V L+++CP DIT VVD FRLKQ+LLN LSN+MKYT  G+IT+ V +H+ GE+TIGV DTG+GIP++ +KLIF+AHVQL+A+DVGRHG HGLGLYLVSMLA  M WTV
Sbjct:    1 NQMLSYVNHKVRNPLNVIKGMVDLTVLTLTQCQLPPELSTCIWDLTIASRACDFLEHIVSGILVIQRWEAGALMLNLRPYRISDIVADMQNAIVHKMEENKMVALVVDCPADITVVVDEFRLKQMLLNLLSNAMKYTAAGTITIEVKRHEGGEVTIGVRDTGAGIPDSQKKLIFRAHVQLNANDVGRHGYHGLGLYLVSMLADCMGWTV 209          
BLAST of jgi.p|Trimin1|130713 vs. uniprot
Match: A0A6N1NHF0_9VIRU (Histidine kinase n=1 Tax=Tupanvirus deep ocean TaxID=2126984 RepID=A0A6N1NHF0_9VIRU)

HSP 1 Score: 180 bits (457), Expect = 1.510e-49
Identity = 98/231 (42.42%), Postives = 142/231 (61.47%), Query Frame = 1
Query:    1 ANSMLSYVNHEVRNPLNVIKGMVEYTLLTLEQ---------CALPPELGTCVADLTVASRACDFLEHIVSDILVLQRLEAGALVLNPHPHRVSDIVEDMREAVRHKMEEKKNVVLIIECPTDITAVVDAFRLKQILLNFLSNSMKYTDQGSITVRVTKHDSGEITIGVLDTGSGIPETHQKLIFQAHVQLDADDVGRHGSHGLGLYLVSMLAQRMNWTVGFHSTVGVGSHF 666
            A  ML YVNHE+RNPLNVIKG+VE+TL  + +         C       T V+DL+  S +C+ LEHIV+DIL + +L++G L L+    ++   V D+ + +  K++EK+ + L +    D+    D +R+KQILLNFL+N++KYT +GSIT+++ + + G     V DTG GI +  +  IFQ   Q + +D  R+G  GLGLYL  ML +RM   +GF ST GVGS F
Sbjct:  396 ATQMLGYVNHEIRNPLNVIKGLVEFTLHNMNKLDENKLDRICMDKMFYDTIVSDLSTVSGSCNMLEHIVTDILDINKLDSGKLELDNKWVKIRSFVNDISKTISQKIDEKQTIKLDVVYEHDLVLYFDIYRMKQILLNFLTNAVKYTLKGSITIKIEELN-GNYRFSVTDTGRGIKDEAKFRIFQPFNQTNPEDASRYGGIGLGLYLCKMLTERMGGKIGFESTYGVGSTF 625          
BLAST of jgi.p|Trimin1|130713 vs. uniprot
Match: A0A6N1NZN1_9VIRU (Histidine kinase n=1 Tax=Tupanvirus soda lake TaxID=2126985 RepID=A0A6N1NZN1_9VIRU)

HSP 1 Score: 172 bits (436), Expect = 1.500e-46
Identity = 94/231 (40.69%), Postives = 139/231 (60.17%), Query Frame = 1
Query:    1 ANSMLSYVNHEVRNPLNVIKGMVEYTLLTLEQ---------CALPPELGTCVADLTVASRACDFLEHIVSDILVLQRLEAGALVLNPHPHRVSDIVEDMREAVRHKMEEKKNVVLIIECPTDITAVVDAFRLKQILLNFLSNSMKYTDQGSITVRVTKHDSGEITIGVLDTGSGIPETHQKLIFQAHVQLDADDVGRHGSHGLGLYLVSMLAQRMNWTVGFHSTVGVGSHF 666
            A  ML YVNHE+RNPLNVIKG+VE+TL  + +         C       T V+DL+  S +C+ LEHIV+DIL + +L++G L L+    ++   + D+ + +  K++EK+ + L +    D+    D +R+KQILLNFL+N++KYT +G I +++ + + G     V DTG GI +  +  IFQ   Q + +D  R+G  GLGLYL  ML +RM   +GF ST  VGS F
Sbjct:  396 ATQMLGYVNHEIRNPLNVIKGLVEFTLHNISKLDQNKVDRICMDKMFYDTIVSDLSTVSGSCNMLEHIVTDILDINKLDSGKLELDNKWVKIRTFMNDISKTISQKIDEKQTIKLEVIYEYDLVLYFDIYRMKQILLNFLTNAVKYTIKGKIIIKIEELN-GNYRFSVTDTGRGIKDDAKSRIFQPFNQTNPEDSSRYGGIGLGLYLCKMLTERMGGKIGFESTFEVGSTF 625          
BLAST of jgi.p|Trimin1|130713 vs. uniprot
Match: A0A3G4ZXL8_9VIRU (Histidine kinase n=1 Tax=Edafosvirus sp. TaxID=2487765 RepID=A0A3G4ZXL8_9VIRU)

HSP 1 Score: 152 bits (385), Expect = 2.210e-39
Identity = 91/236 (38.56%), Postives = 133/236 (56.36%), Query Frame = 1
Query:    1 ANSMLSYVNHEVRNPLNVIKGMVEYTLLTLEQCA-----------LPPELGTCVADLTVASRACDFLEHIVSDILVLQRLEAGALVLNPHPHRVSDIVEDMREAVRHKMEEKKNVVLIIECPTDI---TAVVDAFRLKQILLNFLSNSMKYTDQGSITVRVTKHDSGEITIGVLDTGSGIPETHQKLIFQAHVQLDADDVGRHGSHGLGLYLVSMLAQRMNWTVGFHSTVGVGSHF 666
            AN ML YVNHE+RNPLNVI GMV+ T+ TL                  EL + ++DL  A  +C+ L HIV+D+L +++LE   LV++     +    + + + +  K+ EK +V   +E   ++      +D  RL QILLN + NS+K+T  G+I +++ K++S  I   V DTG GIP+  +  IFQ   Q D +D  R+G  GLGLYL +ML   M  T+ F S  G+GS F
Sbjct:  378 ANKMLGYVNHEIRNPLNVINGMVDITIETLNNKIEKNTGGTNVQIQKDELSSVISDLYTAEGSCNMLRHIVNDVLDIRKLEDDKLVIDNEYINLDLFCKSIHKTIIPKLREKIDVSFSMEFKDNLENENIYIDKNRLSQILLNLIFNSIKFTIVGNIILKIRKNNSN-IIFEVNDTGRGIPDEAKSYIFQPFHQADKEDSSRYGGIGLGLYLCNMLVNCMGGTINFESKFGIGSSF 612          
BLAST of jgi.p|Trimin1|130713 vs. uniprot
Match: A0A1S7LGA7_MAGMO (Histidine kinase n=1 Tax=Magnetococcus massalia (strain MO-1) TaxID=451514 RepID=A0A1S7LGA7_MAGMO)

HSP 1 Score: 130 bits (327), Expect = 3.500e-31
Identity = 81/226 (35.84%), Postives = 129/226 (57.08%), Query Frame = 1
Query:   13 LSYVNHEVRNPLNVIKGMVEY---TLLTLEQCALPPELGTCVADLTVASRACDFLEHIVSDILVLQRLEAGALVLNPHPHRVSDIVEDMREAVRHKMEEKK-NVVLIIECPTDITAVVDAFRLKQILLNFLSNSMKYTDQGSITVRVT-KHDSGE---ITIGVLDTGSGIPETHQKLIFQAHVQLDADDVGRHGSHGLGLYLVSMLAQRMNWTVGFHSTVGVGSHF 666
            L+ ++HE+R P+N I GM E    T LT++Q             L V   + + L  I++DIL + R+EAG LV++  P  +  IV+D  E +R + +EK  N ++ ++       + DA R++QIL+NFL N++K+T+ G+I   VT +HD  +   +T  V+DTG G+P+++Q+ IF A  Q+D+    RHG  GLGL +   L   M+  +   S  G+GS F
Sbjct:  414 LATMSHEIRTPMNAILGMTELLGETELTVDQRNY----------LAVCRSSGENLLQIINDILDISRVEAGRLVVHAKPFNLRRIVKDAGEVIRFRSQEKGLNQLVSVDSNVPQWFIGDAARIRQILINFLGNAVKFTESGTIATLVTCEHDKADRYAVTFRVVDTGVGVPKSYQEHIFNAFQQVDSSSHRRHGGTGLGLAICQKLVDLMDGYISLKSDEGIGSAF 629          
BLAST of jgi.p|Trimin1|130713 vs. uniprot
Match: A0A349TZ44_9PROT (Histidine kinase n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A349TZ44_9PROT)

HSP 1 Score: 127 bits (320), Expect = 2.660e-30
Identity = 79/226 (34.96%), Postives = 125/226 (55.31%), Query Frame = 1
Query:   13 LSYVNHEVRNPLNVIKGMVEYTLLTLEQCALPPELGTCVADLTVASRACDFLEHIVSDILVLQRLEAGALVLNPHPHRVSDIVEDMREAVRHKMEEKKNVVLIIECPTDITAVV--DAFRLKQILLNFLSNSMKYTDQGSITVRVTKHDSGE------ITIGVLDTGSGIPETHQKLIFQAHVQLDADDVGRHGSHGLGLYLVSMLAQRMNWTVGFHSTVGVGSHF 666
            L+ ++HE+R PLN I G+V   L T       P       +L     + D L  IV+DIL + +++AG + L   P     +   + + ++ +  EKK + + ++C   I ++V  DA R++QILLNFLSN++K+T++GS+ + + + +SG       +   V DTG GIPE HQK +F  + Q DA   G++G  GLGL +   L   M+  +G  ST G+GS F
Sbjct:  227 LAMMSHEIRTPLNGILGIVAMLLDT-------PSTPEQKENLETIKYSGDALLTIVNDILDISKIDAGKMELEIAPFSPEKLAGSIAQLMQSRAREKK-IEISVQCAPGIPSIVKGDASRIRQILLNFLSNAIKFTEEGSVGIFMDRLESGSTHKNARLRFAVRDTGIGIPEAHQKKLFSEYNQADASISGKYGGTGLGLAISKKLVMAMDGEIGLDSTPGMGSTF 444          
BLAST of jgi.p|Trimin1|130713 vs. uniprot
Match: UPI00166A911A (ATP-binding protein n=2 Tax=Dyella nitratireducens TaxID=1849580 RepID=UPI00166A911A)

HSP 1 Score: 126 bits (317), Expect = 6.650e-30
Identity = 76/223 (34.08%), Postives = 125/223 (56.05%), Query Frame = 1
Query:   13 LSYVNHEVRNPLNVIKGMVEYTLLTLEQCALPPELGTCVADLTVASRACDFLEHIVSDILVLQRLEAGALVLNPHPHRVSDIVEDMREAVRHKMEEKK-NVVLIIECPTDITAVVDAFRLKQILLNFLSNSMKYTDQGSITVRVTKHDSG------EITIGVLDTGSGIPETHQKLIFQAHVQLDADDVGRHGSHGLGLYLVSMLAQRMNWTVGFHSTVGVGS 660
            L+ ++HE+R PL+ +   VE   LT         L T       AS + D L  +V D+L L +LEA  L+L+  P  V  +V+DM + +RH+++EK   + L I  P D+  ++D  R++Q+++N L+N++K+T+QGS+T+ V  + S       ++++ V DTG GIP      +F A+VQ D+    R+G  GLGL +   L + M  T+   S + VG+
Sbjct:  326 LAVMSHEIRVPLSAVLSSVELLKLTRVNKNQRELLVT-------ASSSADALLRLVDDVLDLSKLEADGLMLDSTPTDVGKLVQDMVQIIRHRVDEKGLQLNLNINVPEDVCVLLDVTRIQQVMINLLTNAIKFTNQGSVTLDVALNRSSGDAASRKLSVSVCDTGIGIPPEQHTRLFHAYVQADSTIARRYGGTGLGLSISRQLIELMGGTITLRSELNVGT 541          
BLAST of jgi.p|Trimin1|130713 vs. uniprot
Match: A0A2E2NXJ2_9DELT (Histidine kinase n=2 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A2E2NXJ2_9DELT)

HSP 1 Score: 125 bits (315), Expect = 9.180e-30
Identity = 78/226 (34.51%), Postives = 124/226 (54.87%), Query Frame = 1
Query:    7 SMLSYVNHEVRNPLNVIKGMVEYTLLTLEQCALPPELGTCVADLTVASRACDFLEHIVSDILVLQRLEAGALVLNPHPHRVSDIVEDMREAVRHKMEEKKNVVLIIECPTDITAVV--DAFRLKQILLNFLSNSMKYTDQGSITVRVTKH--DSGE--ITIGVLDTGSGIPETHQKLIFQAHVQLDADDVGRHGSHGLGLYLVSMLAQRMNWTVGFHSTVGVGSHF 666
            + L+ V+HE+RNPL  I G       T++   LP E     A + +  R+   L  +V D+L   ++EA  + +NP     + ++E++  + R +  EK N+ L++E   +I + V  D  R++Q+L+N +SN++K+T +GSIT+ + KH  D G   I  GV DTG GIPE     IF+ + Q +     ++G  GLGL + S L   M    GF +T GVG+ F
Sbjct:  238 TFLAQVSHEIRNPLTAIMG-------TIDLLELPAEPAVREARIDILRRSATSLLELVDDVLDYSKMEADRIEINPKAIDPALLIEEIERSYRPQAVEK-NLDLLLEIDPEIPSEVIGDPLRIRQVLVNLISNALKFTPEGSITLELWKHTLDDGREGIVFGVEDTGIGIPEDAHSQIFEPYGQAERSTTEKYGGTGLGLPICSRLVSLMGGQFGFETTDGVGTRF 455          
BLAST of jgi.p|Trimin1|130713 vs. uniprot
Match: A0A257PRE8_9PROT (Histidine kinase (Fragment) n=1 Tax=Rhodospirillales bacterium 20-64-7 TaxID=1970566 RepID=A0A257PRE8_9PROT)

HSP 1 Score: 124 bits (312), Expect = 1.190e-29
Identity = 82/224 (36.61%), Postives = 119/224 (53.12%), Query Frame = 1
Query:   13 LSYVNHEVRNPLNVIKGMVEYTLLTLEQCALPPELGTCVADLTVASRACDFLEHIVSDILVLQRLEAGALVLNPHPHRVSDIVEDMREAVRHKMEEKKNVVLIIECPTDITAVV--DAFRLKQILLNFLSNSMKYTDQGSITVRVTKHDSGEITIGV----LDTGSGIPETHQKLIFQAHVQLDADDVGRHGSHGLGLYLVSMLAQRMNWTVGFHSTVGVGSHF 666
            L+ ++HE+R PLN + GM+E   +T     L P L   V     A+++   L  +V DIL L R+EAG L L   P  +  I+ D+R     +    K++ L+     D+  VV  D  RL+QIL N + N++K+T +G++TVR +     E TI V     DTG G+P   Q +IF A  Q D+    R+G  GLGL +   L   M+  +G  STVG+GS F
Sbjct:  104 LANMSHEIRTPLNGVVGMIELMQMT----ELTPSLQRHVE---TAAQSSQSLLRLVDDILDLSRIEAGRLQLVAVPFHLPSILHDVRLLFTEQAR-TKSLTLLTAITQDMNTVVAGDKHRLQQILTNLVGNAIKFTPEGTVTVRCSGQPEDEKTIRVRFEVTDTGIGVPAERQAVIFDAFAQADSSMTRRYGGTGLGLSIARQLVHMMDGDIGVQSTVGIGSTF 319          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|130713 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z671_9STRA8.810e-15598.65Histidine kinase-like ATPase n=2 Tax=Tribonema min... [more]
A0A836CM12_9STRA8.990e-10671.77Histidine kinase-like ATPase (Fragment) n=1 Tax=Tr... [more]
A0A6N1NHF0_9VIRU1.510e-4942.42Histidine kinase n=1 Tax=Tupanvirus deep ocean Tax... [more]
A0A6N1NZN1_9VIRU1.500e-4640.69Histidine kinase n=1 Tax=Tupanvirus soda lake TaxI... [more]
A0A3G4ZXL8_9VIRU2.210e-3938.56Histidine kinase n=1 Tax=Edafosvirus sp. TaxID=248... [more]
A0A1S7LGA7_MAGMO3.500e-3135.84Histidine kinase n=1 Tax=Magnetococcus massalia (s... [more]
A0A349TZ44_9PROT2.660e-3034.96Histidine kinase n=2 Tax=Alphaproteobacteria TaxID... [more]
UPI00166A911A6.650e-3034.08ATP-binding protein n=2 Tax=Dyella nitratireducens... [more]
A0A2E2NXJ2_9DELT9.180e-3034.51Histidine kinase n=2 Tax=Deltaproteobacteria bacte... [more]
A0A257PRE8_9PROT1.190e-2936.61Histidine kinase (Fragment) n=1 Tax=Rhodospirillal... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_18contigContig_18:926772..927437 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|130713|gw1.18.28.1
DescriptionPAS fold
COG categoryT
Max annot lvl28211|Alphaproteobacteria
EggNOG OGsCOG5002@1|root,COG5002@2|Bacteria,1R5EN@1224|Proteobacteria,2TWD2@28211|Alphaproteobacteria,43RR9@69277|Phyllobacteriaceae
Evalue2.31e-32
Seed ortholog1116369.KB890024_gene4083
Hectar predicted targeting categoryother localisation
TranscriptId131035
TrackFilteredModels1
ProteinId130713
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|130713gene_1393Tribonema minus UTEX_B_3156 geneContig_18 926772..927437 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1393_1exon_1393_1Tribonema minus UTEX_B_3156 exonContig_18 926772..927437 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1393CDS_1393Tribonema minus UTEX_B_3156 CDSContig_18 926772..927437 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|130713Trimin1|130713|gw1.18.28.1Tribonema minus UTEX_B_3156 polypeptideContig_18 926772..927437 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1393 ID=mRNA_1393|Name=jgi.p|Trimin1|130713|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=666bp|location=Sequence derived from alignment at Contig_18:926772..927437+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GCAAACTCAATGCTCTCGTATGTGAATCACGAGGTCCGCAACCCCTTAAA
TGTTATCAAGGGAATGGTCGAATACACATTGTTGACGCTAGAGCAATGTG
CACTCCCCCCTGAGCTAGGCACCTGCGTGGCAGACCTTACGGTTGCCTCT
AGAGCATGCGACTTTTTAGAACACATTGTCAGTGACATCCTCGTCTTACA
AAGACTGGAGGCTGGAGCTCTCGTGCTCAACCCGCACCCACACCGTGTCA
GTGATATTGTCGAAGACATGCGGGAAGCAGTGAGACACAAGATGGAAGAG
AAGAAGAATGTTGTGCTGATTATAGAGTGCCCCACTGACATAACAGCAGT
AGTTGATGCATTCAGGTTGAAGCAGATCTTGTTGAACTTTTTAAGCAATT
CCATGAAGTACACTGATCAGGGAAGCATTACAGTCAGAGTAACAAAACAT
GACAGCGGTGAAATCACCATTGGAGTTCTCGACACCGGCTCAGGCATACC
TGAGACCCACCAGAAGCTCATATTTCAGGCACATGTGCAGCTGGATGCTG
ATGATGTCGGGAGGCACGGCTCTCATGGCCTAGGGCTATACTTGGTCAGC
ATGCTAGCTCAGCGCATGAACTGGACAGTTGGCTTTCACTCCACCGTAGG
AGTCGGCTCACATTTC
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protein sequence of jgi.p|Trimin1|130713

>Trimin1|130713|gw1.18.28.1 ID=Trimin1|130713|gw1.18.28.1|Name=jgi.p|Trimin1|130713|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=222bp
ANSMLSYVNHEVRNPLNVIKGMVEYTLLTLEQCALPPELGTCVADLTVAS
RACDFLEHIVSDILVLQRLEAGALVLNPHPHRVSDIVEDMREAVRHKMEE
KKNVVLIIECPTDITAVVDAFRLKQILLNFLSNSMKYTDQGSITVRVTKH
DSGEITIGVLDTGSGIPETHQKLIFQAHVQLDADDVGRHGSHGLGLYLVS
MLAQRMNWTVGFHSTVGVGSHF
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mRNA from alignment at Contig_18:926772..927437+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1393 ID=mRNA_1393|Name=jgi.p|Trimin1|130713|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=666bp|location=Sequence derived from alignment at Contig_18:926772..927437+ (Tribonema minus UTEX_B_3156 )
GCAAACTCAATGCTCTCGTATGTGAATCACGAGGTCCGCAACCCCTTAAA TGTTATCAAGGGAATGGTCGAATACACATTGTTGACGCTAGAGCAATGTG CACTCCCCCCTGAGCTAGGCACCTGCGTGGCAGACCTTACGGTTGCCTCT AGAGCATGCGACTTTTTAGAACACATTGTCAGTGACATCCTCGTCTTACA AAGACTGGAGGCTGGAGCTCTCGTGCTCAACCCGCACCCACACCGTGTCA GTGATATTGTCGAAGACATGCGGGAAGCAGTGAGACACAAGATGGAAGAG AAGAAGAATGTTGTGCTGATTATAGAGTGCCCCACTGACATAACAGCAGT AGTTGATGCATTCAGGTTGAAGCAGATCTTGTTGAACTTTTTAAGCAATT CCATGAAGTACACTGATCAGGGAAGCATTACAGTCAGAGTAACAAAACAT GACAGCGGTGAAATCACCATTGGAGTTCTCGACACCGGCTCAGGCATACC TGAGACCCACCAGAAGCTCATATTTCAGGCACATGTGCAGCTGGATGCTG ATGATGTCGGGAGGCACGGCTCTCATGGCCTAGGGCTATACTTGGTCAGC ATGCTAGCTCAGCGCATGAACTGGACAGTTGGCTTTCACTCCACCGTAGG AGTCGGCTCACATTTC
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Coding sequence (CDS) from alignment at Contig_18:926772..927437+

>mRNA_1393 ID=mRNA_1393|Name=jgi.p|Trimin1|130713|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=666bp|location=Sequence derived from alignment at Contig_18:926772..927437+ (Tribonema minus UTEX_B_3156 )
GCAAACTCAATGCTCTCGTATGTGAATCACGAGGTCCGCAACCCCTTAAA
TGTTATCAAGGGAATGGTCGAATACACATTGTTGACGCTAGAGCAATGTG
CACTCCCCCCTGAGCTAGGCACCTGCGTGGCAGACCTTACGGTTGCCTCT
AGAGCATGCGACTTTTTAGAACACATTGTCAGTGACATCCTCGTCTTACA
AAGACTGGAGGCTGGAGCTCTCGTGCTCAACCCGCACCCACACCGTGTCA
GTGATATTGTCGAAGACATGCGGGAAGCAGTGAGACACAAGATGGAAGAG
AAGAAGAATGTTGTGCTGATTATAGAGTGCCCCACTGACATAACAGCAGT
AGTTGATGCATTCAGGTTGAAGCAGATCTTGTTGAACTTTTTAAGCAATT
CCATGAAGTACACTGATCAGGGAAGCATTACAGTCAGAGTAACAAAACAT
GACAGCGGTGAAATCACCATTGGAGTTCTCGACACCGGCTCAGGCATACC
TGAGACCCACCAGAAGCTCATATTTCAGGCACATGTGCAGCTGGATGCTG
ATGATGTCGGGAGGCACGGCTCTCATGGCCTAGGGCTATACTTGGTCAGC
ATGCTAGCTCAGCGCATGAACTGGACAGTTGGCTTTCACTCCACCGTAGG
AGTCGGCTCACATTTC
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