mRNA_13912 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|140648
Unique NamemRNA_13912
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|140648 vs. uniprot
Match: A0A835ZD57_9STRA (ZnF_CDGSH domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD57_9STRA)

HSP 1 Score: 139 bits (349), Expect = 6.660e-42
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1 
Query:    1 GRINSRIQMDSPKVADSMELGAGEKKVLCRCWKSETFPICNGAHTSHNQLTGDNVGPISVSVKK 192
            GRINSRIQMDSPKVADSMELGAGEKKVLCRCWKSETFPICNGAHTSHNQLTGDNVGPISVSVKK
Sbjct:    1 GRINSRIQMDSPKVADSMELGAGEKKVLCRCWKSETFPICNGAHTSHNQLTGDNVGPISVSVKK 64
[Close]
BLAST of jgi.p|Trimin1|140648 vs. uniprot
Match: B8CEB8_THAPS (ZnF_CDGSH domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CEB8_THAPS)

HSP 1 Score: 96.7 bits (239), Expect = 4.340e-25
Identity = 41/63 (65.08%), Postives = 52/63 (82.54%), Query Frame = 1 
Query:    4 RINSRIQMDSPKVADSMELGAGEKKVLCRCWKSETFPICNGAHTSHNQLTGDNVGPISVSVKK 192
            RIN++I +DSPKVA   ++  GEKKV CRCWKSETFP+C+ AH +HN+ TGDNVGP+ VSV+K
Sbjct:    3 RINNKIDLDSPKVATMDKICDGEKKVYCRCWKSETFPLCDAAHVAHNKETGDNVGPLIVSVEK 65
[Close]
BLAST of jgi.p|Trimin1|140648 vs. uniprot
Match: A0A835ZBW8_9STRA (CDGSH iron sulfur domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBW8_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 2.840e-24
Identity = 41/63 (65.08%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:    4 RINSRIQMDSPKVADSMELGAGEKKVLCRCWKSETFPICNGAHTSHNQLTGDNVGPISVSVKK 192
            RIN++I ++SPKVA    L AG KKV CRCWKS TFP+CNGAH  HN+  GDNVGP+ VSV+K
Sbjct:   34 RINNKIDLESPKVATMETLPAGGKKVYCRCWKSATFPLCNGAHVKHNEEVGDNVGPLIVSVEK 96
[Close]
BLAST of jgi.p|Trimin1|140648 vs. uniprot
Match: A0A813IN66_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813IN66_POLGL)

HSP 1 Score: 95.9 bits (237), Expect = 1.840e-23
Identity = 40/63 (63.49%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:    4 RINSRIQMDSPKVADSMELGAGEKKVLCRCWKSETFPICNGAHTSHNQLTGDNVGPISVSVKK 192
            +IN +I+ +SPKV    +L AG+KKV CRCW S+TFP+CNGAH  HN  TGDNVGP+ VSVKK
Sbjct:  117 KINKKIEPESPKVVTKEDLDAGDKKVYCRCWLSDTFPLCNGAHAKHNGQTGDNVGPLIVSVKK 179
[Close]
BLAST of jgi.p|Trimin1|140648 vs. uniprot
Match: A0A7S3HKP5_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HKP5_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 5.490e-23
Identity = 38/63 (60.32%), Postives = 50/63 (79.37%), Query Frame = 1 
Query:    4 RINSRIQMDSPKVADSMELGAGEKKVLCRCWKSETFPICNGAHTSHNQLTGDNVGPISVSVKK 192
            +IN++I +DS KV    +L AG+KKV CRCW S+TFP+CNGAH  HN+ TGDNVGP+ V+V+K
Sbjct:   76 KINNKIDLDSAKVVTQDKLKAGDKKVYCRCWLSDTFPLCNGAHAKHNEATGDNVGPLIVAVEK 138
[Close]
BLAST of jgi.p|Trimin1|140648 vs. uniprot
Match: A0A7S2UEE3_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UEE3_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 7.250e-23
Identity = 38/63 (60.32%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:    4 RINSRIQMDSPKVADSMELGAGEKKVLCRCWKSETFPICNGAHTSHNQLTGDNVGPISVSVKK 192
            RIN+++ +DSPKVA   +L  G KKV CRCW+S TFP+C+G+H  HN+ TGDNVGP+ VSV K
Sbjct:   35 RINTQVDLDSPKVATMEKLEPGTKKVYCRCWQSGTFPLCDGSHMKHNEATGDNVGPLIVSVPK 97
[Close]
BLAST of jgi.p|Trimin1|140648 vs. uniprot
Match: L1J777_GUITC (ZnF_CDGSH domain-containing protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1J777_GUITC)

HSP 1 Score: 90.9 bits (224), Expect = 8.450e-23
Identity = 38/64 (59.38%), Postives = 49/64 (76.56%), Query Frame = 1 
Query:    1 GRINSRIQMDSPKVADSMELGAGEKKVLCRCWKSETFPICNGAHTSHNQLTGDNVGPISVSVKK 192
            G+IN +I++D+PKVA +  +  G+K V CRCWKS TFP C+GAH  HNQ TGDNVGP+ V+V K
Sbjct:    3 GKINHKIELDNPKVATTDTIEPGQKVVYCRCWKSATFPKCDGAHNKHNQETGDNVGPLIVNVPK 66
[Close]
BLAST of jgi.p|Trimin1|140648 vs. uniprot
Match: A0A812JQ04_9DINO (Cisd1 protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812JQ04_9DINO)

HSP 1 Score: 92.0 bits (227), Expect = 1.440e-22
Identity = 38/64 (59.38%), Postives = 48/64 (75.00%), Query Frame = 1 
Query:    1 GRINSRIQMDSPKVADSMELGAGEKKVLCRCWKSETFPICNGAHTSHNQLTGDNVGPISVSVKK 192
            G+IN++I  + PKV    +L AG+KKV CRCW S TFP+C+G H  HN+ TGDNVGP+ VSVKK
Sbjct:   59 GKINNKIDPEVPKVVTKEDLKAGDKKVYCRCWLSGTFPLCDGTHAKHNEATGDNVGPLIVSVKK 122
[Close]
BLAST of jgi.p|Trimin1|140648 vs. uniprot
Match: A0A8J6CAC4_DIALT (ZnF_CDGSH domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CAC4_DIALT)

HSP 1 Score: 90.9 bits (224), Expect = 2.260e-22
Identity = 39/63 (61.90%), Postives = 48/63 (76.19%), Query Frame = 1 
Query:    4 RINSRIQMDSPKVADSMELGAGEKKVLCRCWKSETFPICNGAHTSHNQLTGDNVGPISVSVKK 192
            RIN++I +DSPKV + +EL    K V CRCWKS TFP+CNGAH  HN+ TGDNVGP+ V+ KK
Sbjct:   41 RINTQIDLDSPKVVNMLELEG--KAVYCRCWKSATFPLCNGAHAKHNEATGDNVGPLIVTAKK 101
[Close]
BLAST of jgi.p|Trimin1|140648 vs. uniprot
Match: A0A7S2I006_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2I006_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 4.010e-22
Identity = 38/64 (59.38%), Postives = 48/64 (75.00%), Query Frame = 1 
Query:    1 GRINSRIQMDSPKVADSMELGAGEKKVLCRCWKSETFPICNGAHTSHNQLTGDNVGPISVSVKK 192
            G+IN    +DSPKV    +L AG+KKV CRCW+S TFP+C+G+H  HN+ TGDNVGP+ VSV K
Sbjct:   58 GKINFEKDLDSPKVVTQEKLEAGDKKVYCRCWQSGTFPLCDGSHVKHNEETGDNVGPLIVSVAK 121
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|140648 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZD57_9STRA6.660e-42100.00ZnF_CDGSH domain-containing protein (Fragment) n=1... [more]
B8CEB8_THAPS4.340e-2565.08ZnF_CDGSH domain-containing protein (Fragment) n=1... [more]
A0A835ZBW8_9STRA2.840e-2465.08CDGSH iron sulfur domain-containing protein n=1 Ta... [more]
A0A813IN66_POLGL1.840e-2363.49Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A7S3HKP5_9STRA5.490e-2360.32Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S2UEE3_9STRA7.250e-2360.32Hypothetical protein n=1 Tax=Attheya septentrional... [more]
L1J777_GUITC8.450e-2359.38ZnF_CDGSH domain-containing protein n=2 Tax=Guilla... [more]
A0A812JQ04_9DINO1.440e-2259.38Cisd1 protein n=1 Tax=Symbiodinium natans TaxID=87... [more]
A0A8J6CAC4_DIALT2.260e-2261.90ZnF_CDGSH domain-containing protein n=1 Tax=Diacro... [more]
A0A7S2I006_9STRA4.010e-2259.38Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_122contigContig_122:121009..121688 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|140648|gw1.122.63.1
DescriptionIron-binding zinc finger CDGSH type
COG categoryS
Max annot lvl2836|Bacillariophyta
EggNOG OGsKOG3461@1|root,KOG3461@2759|Eukaryota,2XDXE@2836|Bacillariophyta
Evalue7.12e-26
Seed ortholog35128.Thaps20194
Hectar predicted targeting categoryother localisation
TranscriptId140970
TrackFilteredModels1
ProteinId140648
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|140648gene_13912Tribonema minus UTEX_B_3156 geneContig_122 121009..121688 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|140648Trimin1|140648|gw1.122.63.1Tribonema minus UTEX_B_3156 polypeptideContig_122 121009..121688 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13912_2exon_13912_2Tribonema minus UTEX_B_3156 exonContig_122 121009..121133 -
exon_13912_1exon_13912_1Tribonema minus UTEX_B_3156 exonContig_122 121622..121688 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13912CDS_13912Tribonema minus UTEX_B_3156 CDSContig_122 121622..121688 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13912 ID=mRNA_13912|Name=jgi.p|Trimin1|140648|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=192bp|location=Sequence derived from alignment at Contig_122:121009..121688- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGCAGGATAAATTCTCGGATCCAGATGGATTCGCCCAAGGTTGCCGACAG
CATGGAGCTCGGAGCAGGCGAGAAGAAGGTGCTCTGCCGATGCTGGAAGT
CGGAGACGTTCCCCATCTGCAACGGCGCGCACACTTCCCACAACCAGCTC
ACCGGCGACAACGTTGGCCCAATTTCCGTCTCAGTCAAGAAG
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protein sequence of jgi.p|Trimin1|140648

>Trimin1|140648|gw1.122.63.1 ID=Trimin1|140648|gw1.122.63.1|Name=jgi.p|Trimin1|140648|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=64bp
GRINSRIQMDSPKVADSMELGAGEKKVLCRCWKSETFPICNGAHTSHNQL
TGDNVGPISVSVKK
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mRNA from alignment at Contig_122:121009..121688-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13912 ID=mRNA_13912|Name=jgi.p|Trimin1|140648|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=680bp|location=Sequence derived from alignment at Contig_122:121009..121688- (Tribonema minus UTEX_B_3156 )
GGCAGGATAAATTCTCGGATCCAGATGGATTCGCCCAAGGTTGCCGACAG
CATGGAGCTCGGAGCAGGTGCGCTGCCGATGTCGTTGCAGACCACGTGCT
GCGATGACTTCATTCGAACACAGTCAGCATGGAGGTACACAGCGCAGTAG
TAGTCAGGGTGAGACATCATGTAGGTCGTGTACTAAGAGGGCGTAGCCTT
TGCCAAGCGATCAAGATCCATCTTTGGGTGGATTCGTGCGAAGGATGGAT
CCATTCCTGCACTTCCTAAATTGTAGAATGCTTTTTGGAGTGATCAACAT
TCCCCGGCTGTTATGCACCTTGTCATTGCACCAACAGCAACTGCAACATC
ATGTACTAGAAATGCCAAGTGCTTAGACCCAATGTTTACCTCACGCAGCA
AAACTGGCTGAACTGCTGCTGAGTTGCCATCAGCGTTTAACCTACCACCT
GCTGCAATAATGTTAACAGCTTACCTCAACTCACATTCCAGTATTGTGGA
TATCTCATACATCTACATGCCTTTTGCTACACGCCTCTTTGTTGTTGGTG
TGCAGGCGAGAAGAAGGTGCTCTGCCGATGCTGGAAGTCGGAGACGTTCC
CCATCTGCAACGGCGCGCACACTTCCCACAACCAGCTCACCGGCGACAAC
GTTGGCCCAATTTCCGTCTCAGTCAAGAAG
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Coding sequence (CDS) from alignment at Contig_122:121009..121688-

>mRNA_13912 ID=mRNA_13912|Name=jgi.p|Trimin1|140648|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=192bp|location=Sequence derived from alignment at Contig_122:121009..121688- (Tribonema minus UTEX_B_3156 )
GGCAGGATAAATTCTCGGATCCAGATGGATTCGCCCAAGGTTGCCGACAG
CATGGAGCTCGGAGCAGGCGAGAAGAAGGTGCTCTGCCGATGCTGGAAGT
CGGAGACGTTCCCCATCTGCAACGGCGCGCACACTTCCCACAACCAGCTC
ACCGGCGACAACGTTGGCCCAATTTCCGTCTCAGTCAAGAAG
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