mRNA_13883 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|155432
Unique NamemRNA_13883
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|155432 vs. uniprot
Match: A0A835ZAL5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAL5_9STRA)

HSP 1 Score: 489 bits (1259), Expect = 7.190e-172
Identity = 334/334 (100.00%), Postives = 334/334 (100.00%), Query Frame = 1
Query:    1 VPGSDEIDKDSDVTGKLFVGKSSGISWQTSEESLSYHFSKFGALADVALMKDKYTGQPRGFGFIKFEDPSVLDAVLAQPEHNIDGRVVDVKRAVPKSEAPGPARATRQADFNKVFVGGLAPSVTAAEFRQYFEGFGAVSDAVVMFDRQTQRSRGFGFVTFQDESVVQNVLMGTHELNGKMVEVKTAEPKESRRNASPGGGRGLPYGMQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSPYGXXXXXXXXASAXXXXXXYGXXXXXXXXXXXXXXXXXXXXXXGGYGAGAPGYSAPQAAGYAXXRAGAGGYDAAAAGAAQAGAPPPGQQPQYA 1002
            VPGSDEIDKDSDVTGKLFVGKSSGISWQTSEESLSYHFSKFGALADVALMKDKYTGQPRGFGFIKFEDPSVLDAVLAQPEHNIDGRVVDVKRAVPKSEAPGPARATRQADFNKVFVGGLAPSVTAAEFRQYFEGFGAVSDAVVMFDRQTQRSRGFGFVTFQDESVVQNVLMGTHELNGKMVEVKTAEPKESRRNASPGGGRGLPYGMQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSPYGXXXXXXXXASAXXXXXXYGXXXXXXXXXXXXXXXXXXXXXXGGYGAGAPGYSAPQAAGYAXXRAGAGGYDAAAAGAAQAGAPPPGQQPQYA
Sbjct:    1 VPGSDEIDKDSDVTGKLFVGKSSGISWQTSEESLSYHFSKFGALADVALMKDKYTGQPRGFGFIKFEDPSVLDAVLAQPEHNIDGRVVDVKRAVPKSEAPGPARATRQADFNKVFVGGLAPSVTAAEFRQYFEGFGAVSDAVVMFDRQTQRSRGFGFVTFQDESVVQNVLMGTHELNGKMVEVKTAEPKESRRNASPGGGRGLPYGMQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSPYGXXXXXXXXASAXXXXXXYGXXXXXXXXXXXXXXXXXXXXXXGGYGAGAPGYSAPQAAGYAXXRAGAGGYDAAAAGAAQAGAPPPGQQPQYA 334          
BLAST of jgi.p|Trimin1|155432 vs. uniprot
Match: A0A836CMD2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMD2_9STRA)

HSP 1 Score: 291 bits (745), Expect = 5.970e-96
Identity = 144/174 (82.76%), Postives = 158/174 (90.80%), Query Frame = 1
Query:   16 EIDKDSDVTGKLFVGKSSGISWQTSEESLSYHFSKFGALADVALMKDKYTGQPRGFGFIKFEDPSVLDAVLAQPEHNIDGRVVDVKRAVPKSEAPGPARATRQADFNKVFVGGLAPSVTAAEFRQYFEGFGAVSDAVVMFDRQTQRSRGFGFVTFQDESVVQNVLMGTHELNGK 537
            E+DKD+D+ GK+FVG   GISWQTS+ESLS +FSKFGALADVALMKDKYTGQPRGFGFIKFEDP+V+D VL Q EH+IDGR VDVKRAVPKSEAPGP+R  R AD NKVFVGGLAPSVT AEFR YFEGFGAVSDAVVMFDRQT RSRGFGFVTFQ++SVVQNVLMGTHE+NG+
Sbjct:   14 ELDKDNDILGKIFVG---GISWQTSDESLSKYFSKFGALADVALMKDKYTGQPRGFGFIKFEDPAVVDVVLTQAEHSIDGRTVDVKRAVPKSEAPGPSRTARPADTNKVFVGGLAPSVTVAEFRTYFEGFGAVSDAVVMFDRQTLRSRGFGFVTFQEDSVVQNVLMGTHEINGE 184          
BLAST of jgi.p|Trimin1|155432 vs. uniprot
Match: D7FW71_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW71_ECTSI)

HSP 1 Score: 283 bits (723), Expect = 2.290e-88
Identity = 142/200 (71.00%), Postives = 169/200 (84.50%), Query Frame = 1
Query:    1 VPGSDEIDKDSDVTGKLFVGKSSGISWQTSEESLSYHFSKFGALADVALMKDKYTGQPRGFGFIKFEDPSVLDAVLAQPEHNIDGRVVDVKRAVPKSEAPGPA-RATRQADFNKVFVGGLAPSVTAAEFRQYFEGFGAVSDAVVMFDRQTQRSRGFGFVTFQDESVVQNVLMGTHELNGKMVEVKTAEPKESRRNASPGG 597
            + GS   DKD+DV GKLF+G   GISWQT+EE L +HF K+G LAD+ALMKDKYTG PRGFGFIKFED +VLD +L+Q EH IDG+VVDVKRAVPKSEAPGP+ R++R A+ NK+FVGGLAP+V  AEFR+YFE FG V DAVVMFDRQTQRSRGFGFVTFQ+++VV +++MGTHE+NGKMVEVK AEPKE+R   +P G
Sbjct:  134 IAGSVAHDKDNDVEGKLFIG---GISWQTTEEGLRHHFGKYGTLADIALMKDKYTGHPRGFGFIKFEDITVLDEILSQ-EHKIDGKVVDVKRAVPKSEAPGPSSRSSRPAETNKIFVGGLAPTVMMAEFRKYFETFGGVVDAVVMFDRQTQRSRGFGFVTFQEDAVVHDIMMGTHEINGKMVEVKRAEPKENRSGRAPRG 329          
BLAST of jgi.p|Trimin1|155432 vs. uniprot
Match: A0A6H5JV91_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV91_9PHAE)

HSP 1 Score: 224 bits (572), Expect = 6.060e-68
Identity = 112/151 (74.17%), Postives = 131/151 (86.75%), Query Frame = 1
Query:  148 MKDKYTGQPRGFGFIKFEDPSVLDAVLAQPEHNIDGRVVDVKRAVPKSEAPGPA-RATRQADFNKVFVGGLAPSVTAAEFRQYFEGFGAVSDAVVMFDRQTQRSRGFGFVTFQDESVVQNVLMGTHELNGKMVEVKTAEPKESRRNASPGG 597
            MKDKYTG PRGFGFIKFED +VLD +L+Q EH IDG+VVDVKRAVPKSEAPGP+ R++R A+ NK+FVGGLAP+V  AEFR+YFE FG V DAVVMFDRQTQRSRGFGFVTFQ+++VV  ++MGTHE+NGKMVEVK AEPKE+R   +P G
Sbjct:    1 MKDKYTGHPRGFGFIKFEDVTVLDEILSQ-EHKIDGKVVDVKRAVPKSEAPGPSSRSSRPAETNKIFVGGLAPTVMMAEFRKYFETFGGVVDAVVMFDRQTQRSRGFGFVTFQEDAVVHEIMMGTHEINGKMVEVKRAEPKENRSGRAPRG 150          
BLAST of jgi.p|Trimin1|155432 vs. uniprot
Match: A0A7S2XZ50_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZ50_9STRA)

HSP 1 Score: 214 bits (545), Expect = 8.050e-64
Identity = 108/187 (57.75%), Postives = 136/187 (72.73%), Query Frame = 1
Query:   43 GKLFVGKSSGISWQTSEESLSYHFSKFGALADVALMKDKYTGQPRGFGFIKFEDPSVLDAVLAQPEHNIDGRVVDVKRAVPKSEAPGPARATRQADFNKVFVGGLAPSVTAAEFRQYFEGFGAVSDAVVMFDRQTQRSRGFGFVTFQDESVVQNVLMGTHELNGKMVEVKTAEPKESRRNASPGGGR 603
            GK+F+G   G+SWQT+E+ L Y+F KFG L DVA+MKDK+TGQPRGFGF+ F+D SV++ VL Q  H +DGR VD KRAV + E+  P       +  K+FVGGLAPSV   +FR YF+ FG ++DAVVM DR T RSRGFGFVT+ DES V++VL G+HE+ GK VEVK AEP++ R    P GGR
Sbjct:    5 GKVFIG---GVSWQTTEDGLRYYFEKFGELTDVAVMKDKFTGQPRGFGFVTFKDTSVVEKVLGQT-HTLDGRQVDCKRAVRREESSAPRGGGYGGESKKIFVGGLAPSVEEDDFRGYFDKFGTITDAVVMMDRNTGRSRGFGFVTYDDESSVRDVLAGSHEIKGKFVEVKRAEPRQDR---GPAGGR 184          
BLAST of jgi.p|Trimin1|155432 vs. uniprot
Match: F0WG76_9STRA (Uncharacterized protein AlNc14C88G5606 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WG76_9STRA)

HSP 1 Score: 215 bits (548), Expect = 1.050e-62
Identity = 112/201 (55.72%), Postives = 141/201 (70.15%), Query Frame = 1
Query:   43 GKLFVGKSSGISWQTSEESLSYHFSKFGALADVALMKDKYTGQPRGFGFIKFEDPSVLDAVLAQPEHNIDGRVVDVKRAVPKSE-APGPARATRQA------------DFNKVFVGGLAPSVTAAEFRQYFEGFGAVSDAVVMFDRQTQRSRGFGFVTFQDESVVQNVLMGTHELNGKMVEVKTAEPKESRRNASPGGGRG 606
            GKLF+G   G+SW+T+EE+L  HF K+G L D ALMKDK++GQPRGFGF+ F D +VLD VL +  H IDGR V+VKRA+P+ + A GP+                  +  KVFVGGL PSVT  +FR+YFE FG ++DAVVMFDR+TQRSRGFGFVTF++E  V  V+  THEL+GK+VE+K AEPKE+R      GG G
Sbjct:  102 GKLFIG---GVSWETTEETLRDHFGKYGPLTDAALMKDKFSGQPRGFGFVTFADVAVLDRVLEE-SHTIDGRTVEVKRAIPRDKTASGPSDVRSSGAHGRGNSGGVITESKKVFVGGLPPSVTEQDFRRYFEEFGRITDAVVMFDRETQRSRGFGFVTFEEEGAVAEVISKTHELHGKVVEIKRAEPKEARSGGGYSGGYG 298          
BLAST of jgi.p|Trimin1|155432 vs. uniprot
Match: A0A7S3UWI8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWI8_HETAK)

HSP 1 Score: 205 bits (521), Expect = 1.010e-61
Identity = 100/184 (54.35%), Postives = 134/184 (72.83%), Query Frame = 1
Query:   22 DKDSDVTGKLFVGKSSGISWQTSEESLSYHFSKFGALADVALMKDKYTGQPRGFGFIKFEDPSVLDAVLAQPEHNIDGRVVDVKRAVPKSEAPGPARATRQADFNKVFVGGLAPSVTAAEFRQYFEGFGAVSDAVVMFDRQTQRSRGFGFVTFQDESVVQNVLMGTHELNGKMVEVKTAEPKES 573
            ++ +DVTGKLF+G   G+SWQT+E+ L ++F KFG L D A+MKDK+TGQPRGFGF++FED S +D VLA+ EH IDGRV+D+K+A+ +  AP     + + D  K+FVGGL  +VT  +F+ YF  FG ++DAVVM DR T RSRGFGFVT+ D   V  V+  TH L  K+VE+K AEP++S
Sbjct:    7 ERSNDVTGKLFLG---GVSWQTTEDGLKFYFEKFGKLKDCAVMKDKFTGQPRGFGFVQFEDASAVDKVLAE-EHTIDGRVLDIKKAISREHAP--RAISEKIDVKKIFVGGLEQAVTEGDFKDYFGKFGDITDAVVMMDRNTNRSRGFGFVTYADAESVNRVMNETHTLRDKVVEIKRAEPRDS 184          
BLAST of jgi.p|Trimin1|155432 vs. uniprot
Match: A0A0P1AWA8_PLAHL (Heterogeneous nuclear ribonucleoprotein 1-like isoform x1 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AWA8_PLAHL)

HSP 1 Score: 207 bits (527), Expect = 6.950e-61
Identity = 106/194 (54.64%), Postives = 135/194 (69.59%), Query Frame = 1
Query:   43 GKLFVGKSSGISWQTSEESLSYHFSKFGALADVALMKDKYTGQPRGFGFIKFEDPSVLDAVLAQPEHNIDGRVVDVKRAVPKSE-APGPA--RATRQA-------------DFNKVFVGGLAPSVTAAEFRQYFEGFGAVSDAVVMFDRQTQRSRGFGFVTFQDESVVQNVLMGTHELNGKMVEVKTAEPKESR 576
            GKLF+G   G+SW+T+E++L  HF K+GAL D ALMKDKYTGQPRGFGF+ F D S +D VL +  H +DGR V+VKRA+P+   APG +  R  R               +  K+FVGGLAP++   +FR YFE FG ++DAVVM DR TQRSRGFGF+TF+DES V  V+   HE++GK VE+K AEPKE+R
Sbjct:  127 GKLFIG---GVSWETTEDTLRQHFGKYGALTDAALMKDKYTGQPRGFGFVTFADASAIDRVLEET-HTLDGRSVEVKRAIPRERTAPGSSEFRGARSGYSSNGXXXXGIFTESKKIFVGGLAPTIAEQDFRHYFEEFGRITDAVVMIDRDTQRSRGFGFITFEDESSVAEVISKNHEIHGKSVEIKRAEPKEAR 316          
BLAST of jgi.p|Trimin1|155432 vs. uniprot
Match: A0A484E761_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E761_BRELC)

HSP 1 Score: 210 bits (535), Expect = 1.440e-60
Identity = 108/194 (55.67%), Postives = 138/194 (71.13%), Query Frame = 1
Query:   43 GKLFVGKSSGISWQTSEESLSYHFSKFGALADVALMKDKYTGQPRGFGFIKFEDPSVLDAVLAQPEHNIDGRVVDVKRAVPKSE-APGPA--RATR-------QADFNKVFVGGLAPSVTAAEFRQYFEGFGAVSDAVVMFDRQTQRSRGFGFVTFQDESVVQNVLMGTHELNGKMVEVKTAEPKESRRNASPG 594
            GKLF+G   G+SW+T+E++L  HF K+G L D ALMKDKYTGQPRGFGF+ F D   +D VL +  H +DGR V+VKRA+P+   APGP+  R  R         +  K+FVGGLAP+V   +FR YFE FG ++DAVVM DR TQRSRGFGF+TF+DES V  V+  +HE++GK VE+K AEPKE+R  +S G
Sbjct:  119 GKLFIG---GVSWETTEDTLRQHFGKYGVLTDAALMKDKYTGQPRGFGFVTFADALAIDRVLEET-HTLDGRSVEVKRAIPRERTAPGPSDFRGGRGNNSSGGYTEQKKIFVGGLAPTVAEEDFRHYFEEFGKITDAVVMIDRDTQRSRGFGFITFEDESSVVEVISKSHEIHGKTVEIKRAEPKEARAGSSTG 308          
BLAST of jgi.p|Trimin1|155432 vs. uniprot
Match: A0A6G0XAN2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XAN2_9STRA)

HSP 1 Score: 208 bits (529), Expect = 3.080e-60
Identity = 110/208 (52.88%), Postives = 141/208 (67.79%), Query Frame = 1
Query:   43 GKLFVGKSSGISWQTSEESLSYHFSKFGALADVALMKDKYTGQPRGFGFIKFEDPSVLDAVLAQPEHNIDGRVVDVKRAVPKSE----------------APGPARATRQADFNKVFVGGLAPSVTAAEFRQYFEGFGAVSDAVVMFDRQTQRSRGFGFVTFQDESVVQNVLMGTHELNGKMVEVKTAEPKESRRNASPGGGRGLPYG 618
            GK+FVG   G+SW+T+E++L  HFS++G L D ALMKDKY+GQPRGFGF+ FEDPSV+D VL +  HN+DGR V+VKRAVP+                  + G +   R  +  K+FVGGL P+VT  +FR YFE FG ++DAVVM DR TQRSRGFGFV+F++E  V  V+  +HEL+GK+VE+K AEPK   R     GGRG   G
Sbjct:   76 GKIFVG---GVSWETTEDNLRAHFSQYGNLTDAALMKDKYSGQPRGFGFVTFEDPSVVDRVLNET-HNLDGRNVEVKRAVPRDSMVGGRSGGPSTSGSGYSDGRSGGGRTIESKKIFVGGLPPTVTNEDFRSYFEDFGKITDAVVMMDRDTQRSRGFGFVSFEEEGAVAEVISKSHELHGKVVEIKRAEPKGEIR-----GGRGYDMG 274          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|155432 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZAL5_9STRA7.190e-172100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836CMD2_9STRA5.970e-9682.76Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FW71_ECTSI2.290e-8871.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JV91_9PHAE6.060e-6874.17RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S2XZ50_9STRA8.050e-6457.75Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
F0WG76_9STRA1.050e-6255.72Uncharacterized protein AlNc14C88G5606 n=1 Tax=Alb... [more]
A0A7S3UWI8_HETAK1.010e-6154.35Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A0P1AWA8_PLAHL6.950e-6154.64Heterogeneous nuclear ribonucleoprotein 1-like iso... [more]
A0A484E761_BRELC1.440e-6055.67Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A6G0XAN2_9STRA3.080e-6052.88Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_159contigContig_159:267329..269075 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|155432|gw1.159.83.1
BRITEko00000,ko00001,ko03019
KEGG Pathwayko03015,map03015
KEGG koko:K14411
Descriptionpoly(U) RNA binding
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGsKOG4205@1|root,KOG4205@2759|Eukaryota
Evalue3.75e-89
Seed ortholog2880.D7FW71
Hectar predicted targeting categoryother localisation
TranscriptId155754
TrackFilteredModels1
ProteinId155432
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|155432gene_13883Tribonema minus UTEX_B_3156 geneContig_159 267329..269075 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|155432Trimin1|155432|gw1.159.83.1Tribonema minus UTEX_B_3156 polypeptideContig_159 267329..269075 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13883_5exon_13883_5Tribonema minus UTEX_B_3156 exonContig_159 267329..267798 -
exon_13883_4exon_13883_4Tribonema minus UTEX_B_3156 exonContig_159 268080..268377 -
exon_13883_3exon_13883_3Tribonema minus UTEX_B_3156 exonContig_159 268530..268659 -
exon_13883_2exon_13883_2Tribonema minus UTEX_B_3156 exonContig_159 268842..268878 -
exon_13883_1exon_13883_1Tribonema minus UTEX_B_3156 exonContig_159 269009..269075 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13883CDS_13883Tribonema minus UTEX_B_3156 CDSContig_159 269009..269075 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13883 ID=mRNA_13883|Name=jgi.p|Trimin1|155432|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1002bp|location=Sequence derived from alignment at Contig_159:267329..269075- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTGCCTGGATCTGATGAAATAGACAAGGACAGCGACGTGACTGGCAAACT
CTTTGTAGGCAAGTCAAGCGGCATCAGCTGGCAGACGTCGGAGGAGAGCC
TCAGCTACCACTTCAGCAAGTTCGGAGCACTGGCGGATGTAGCTTTGATG
AAGGACAAATACACTGGCCAGCCCCGCGGATTCGGCTTCATAAAGTTCGA
GGACCCGTCAGTGCTGGACGCAGTGCTGGCGCAGCCCGAGCACAACATCG
ATGGGCGAGTGGTAGATGTGAAGCGCGCAGTGCCGAAGTCGGAGGCGCCT
GGTCCTGCGCGGGCCACACGGCAAGCAGACTTCAACAAGGTGTTCGTGGG
CGGCCTGGCTCCGTCAGTCACGGCGGCGGAGTTCCGCCAGTACTTTGAGG
GGTTCGGCGCGGTGTCAGATGCGGTGGTGATGTTTGATAGACAGACGCAG
CGCTCCCGGGGCTTTGGGTTCGTGACCTTCCAGGACGAGTCCGTGGTGCA
GAACGTGCTCATGGGCACACACGAGCTGAATGGGAAAATGGTGGAGGTGA
AAACGGCGGAGCCGAAGGAGAGCCGCCGGAACGCGTCCCCCGGCGGCGGG
CGTGGCCTCCCCTACGGCATGCAGCCGTACGGCATGCCGATGGCGGGGCG
CGGCATGGGCGGCCGGCACGTGTATGGCCGCAACGGCGGCGGCGGCGCGG
CGGGCGCCGGCGCGACGTCGCCGTACGGCGCCGCCGGCTACGGCGTCTAC
GGCGCGAGCGCCGCCGCCGCCGCCGCGGCGTACGGCAGCGCGTACGGCGC
CGCCGCCGCCGCGGCGTACGGCAGCTACCCCGCGTACGCGGCGTACACGA
CGGGCGGGTACGGGGCGGGCGCGCCAGGCTACAGCGCGCCGCAGGCAGCG
GGCTACGCGGCGTACCGGGCGGGGGCGGGGGGGTACGACGCCGCGGCCGC
GGGGGCGGCGCAGGCTGGGGCGCCGCCCCCCGGGCAGCAGCCGCAGTACG
CG
back to top

protein sequence of jgi.p|Trimin1|155432

>Trimin1|155432|gw1.159.83.1 ID=Trimin1|155432|gw1.159.83.1|Name=jgi.p|Trimin1|155432|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=334bp
VPGSDEIDKDSDVTGKLFVGKSSGISWQTSEESLSYHFSKFGALADVALM
KDKYTGQPRGFGFIKFEDPSVLDAVLAQPEHNIDGRVVDVKRAVPKSEAP
GPARATRQADFNKVFVGGLAPSVTAAEFRQYFEGFGAVSDAVVMFDRQTQ
RSRGFGFVTFQDESVVQNVLMGTHELNGKMVEVKTAEPKESRRNASPGGG
RGLPYGMQPYGMPMAGRGMGGRHVYGRNGGGGAAGAGATSPYGAAGYGVY
GASAAAAAAAYGSAYGAAAAAAYGSYPAYAAYTTGGYGAGAPGYSAPQAA
GYAAYRAGAGGYDAAAAGAAQAGAPPPGQQPQYA
back to top

mRNA from alignment at Contig_159:267329..269075-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13883 ID=mRNA_13883|Name=jgi.p|Trimin1|155432|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1747bp|location=Sequence derived from alignment at Contig_159:267329..269075- (Tribonema minus UTEX_B_3156 )
GTGCCTGGATCTGATGAAATAGACAAGGACAGCGACGTGACTGGCAAACT CTTTGTAGGCAAGTCAAGTGCTTTTTTTGGATGCTCATGATCATGTTTCT GGAGCGCCTGGTTTGCCGTGCGACACACGCTTGCTGGCGCGTATGCGACA GCATCGGTCGGCCAACAAACTCTGTGCACTGCTCTCTTGTCTTCCAGGCG GCATCAGCTGGCAGACGTCGGAGGAGAGCCTCAGGTAGGTTTCTGCAACG TACGTGCGTTGCATGGACCCTGTCGAGGCATCTCACCACTACGTCGCGAC CTGCCGCTCCTGCATGTGTCCTGTTGATCGCATCAGCGTTCTTGCGTCTT TCTGGCTTCGAATATCCTGCCAGCTAATCGTTGTAAGCCTCCCCTGCGCT TTCCCGCTTGTTGCAGCTACCACTTCAGCAAGTTCGGAGCACTGGCGGAT GTAGCTTTGATGAAGGACAAATACACTGGCCAGCCCCGCGGATTCGGCTT CATAAAGTTCGAGGACCCGTCAGTGCTGGACGCAGTGCTGGCGCAGGTGA GCGCAGCCTGCTCTGCCGCCTTGAGCCGACTGCAACATGCCCTGCGCGCG CAGCTGCCGCTGCCGTAGGCCCACAGATCATGCAGCCCTGACGATGCATG CTTGCTCTGCCGCTCCTGCTGCTGCTTTTCCTGACTTGCTGTACGCAGCC CGAGCACAACATCGATGGGCGAGTGGTAGATGTGAAGCGCGCAGTGCCGA AGTCGGAGGCGCCTGGTCCTGCGCGGGCCACACGGCAAGCAGACTTCAAC AAGGTGTTCGTGGGCGGCCTGGCTCCGTCAGTCACGGCGGCGGAGTTCCG CCAGTACTTTGAGGGGTTCGGCGCGGTGTCAGATGCGGTGGTGATGTTTG ATAGACAGACGCAGCGCTCCCGGGGCTTTGGGTTCGTGACCTTCCAGGAC GAGTCCGTGGTGCAGAACGTGCTCATGGGCACACACGAGCTGAATGGTGA GTGCGCGCGCACGCCGCGGCACGGCACGTGCATATAGATGAGTCGTTCGC TTCCCTCACTCGCAGCAGCGCTTGCTTATTCGCGCACGCAACCCATTTTT GGCTGCGGAACAGACCTCCTGCTGTCGCTCAACCGCGATGCGCTGCCGCA CACACTCGTAGCTTAGCAGCACAACAAACGCCGCTGCCGTGCTCGCTCAG ACGCCCATACGCGCTCACCGCAAGCGCGCACCCCCTAACGCCCCCCCCCC CTCCCCCCCCTGACCCCCCTCCCACAGGGAAAATGGTGGAGGTGAAAACG GCGGAGCCGAAGGAGAGCCGCCGGAACGCGTCCCCCGGCGGCGGGCGTGG CCTCCCCTACGGCATGCAGCCGTACGGCATGCCGATGGCGGGGCGCGGCA TGGGCGGCCGGCACGTGTATGGCCGCAACGGCGGCGGCGGCGCGGCGGGC GCCGGCGCGACGTCGCCGTACGGCGCCGCCGGCTACGGCGTCTACGGCGC GAGCGCCGCCGCCGCCGCCGCGGCGTACGGCAGCGCGTACGGCGCCGCCG CCGCCGCGGCGTACGGCAGCTACCCCGCGTACGCGGCGTACACGACGGGC GGGTACGGGGCGGGCGCGCCAGGCTACAGCGCGCCGCAGGCAGCGGGCTA CGCGGCGTACCGGGCGGGGGCGGGGGGGTACGACGCCGCGGCCGCGGGGG CGGCGCAGGCTGGGGCGCCGCCCCCCGGGCAGCAGCCGCAGTACGCG
back to top

Coding sequence (CDS) from alignment at Contig_159:267329..269075-

>mRNA_13883 ID=mRNA_13883|Name=jgi.p|Trimin1|155432|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1002bp|location=Sequence derived from alignment at Contig_159:267329..269075- (Tribonema minus UTEX_B_3156 )
GTGCCTGGATCTGATGAAATAGACAAGGACAGCGACGTGACTGGCAAACT
CTTTGTAGGCAAGTCAAGCGGCATCAGCTGGCAGACGTCGGAGGAGAGCC
TCAGCTACCACTTCAGCAAGTTCGGAGCACTGGCGGATGTAGCTTTGATG
AAGGACAAATACACTGGCCAGCCCCGCGGATTCGGCTTCATAAAGTTCGA
GGACCCGTCAGTGCTGGACGCAGTGCTGGCGCAGCCCGAGCACAACATCG
ATGGGCGAGTGGTAGATGTGAAGCGCGCAGTGCCGAAGTCGGAGGCGCCT
GGTCCTGCGCGGGCCACACGGCAAGCAGACTTCAACAAGGTGTTCGTGGG
CGGCCTGGCTCCGTCAGTCACGGCGGCGGAGTTCCGCCAGTACTTTGAGG
GGTTCGGCGCGGTGTCAGATGCGGTGGTGATGTTTGATAGACAGACGCAG
CGCTCCCGGGGCTTTGGGTTCGTGACCTTCCAGGACGAGTCCGTGGTGCA
GAACGTGCTCATGGGCACACACGAGCTGAATGGGAAAATGGTGGAGGTGA
AAACGGCGGAGCCGAAGGAGAGCCGCCGGAACGCGTCCCCCGGCGGCGGG
CGTGGCCTCCCCTACGGCATGCAGCCGTACGGCATGCCGATGGCGGGGCG
CGGCATGGGCGGCCGGCACGTGTATGGCCGCAACGGCGGCGGCGGCGCGG
CGGGCGCCGGCGCGACGTCGCCGTACGGCGCCGCCGGCTACGGCGTCTAC
GGCGCGAGCGCCGCCGCCGCCGCCGCGGCGTACGGCAGCGCGTACGGCGC
CGCCGCCGCCGCGGCGTACGGCAGCTACCCCGCGTACGCGGCGTACACGA
CGGGCGGGTACGGGGCGGGCGCGCCAGGCTACAGCGCGCCGCAGGCAGCG
GGCTACGCGGCGTACCGGGCGGGGGCGGGGGGGTACGACGCCGCGGCCGC
GGGGGCGGCGCAGGCTGGGGCGCCGCCCCCCGGGCAGCAGCCGCAGTACG
CG
back to top