mRNA_13871 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|353363
Unique NamemRNA_13871
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|353363 vs. uniprot
Match: A0A836CMC6_9STRA (LETM1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMC6_9STRA)

HSP 1 Score: 674 bits (1738), Expect = 1.500e-244
Identity = 342/342 (100.00%), Postives = 342/342 (100.00%), Query Frame = 1
Query:    1 MLPLSESGNRSSHEEGANWAADMVKDSFRRFKAGMTGQWDSFQRCKAIRERLRAPGAAPVTYEEFMALQRGKEDRNKLLQVGVVWVAVPEAIPFVLSFLPGVIPSTFENDADRAQRFRNFNAARVRAALALLDTVDKECLNKNEKKRVEFAQYREAAVRVMKAHTCEDAFGVFEAHTFALVPADTDAQQRRRARPRPPTTVEGMPGPLAKGLAKALGLCTPWMPAFLCRGPLREHLRKVAAGDAVLARTPLDALRGRELREAACARALDAAHPDERELRRRLAEWLRLTGAPLGVDDCDAGAERVFVPERAKAAMLAVNVVASARAARESELPKLLLGGPAL 1026
            MLPLSESGNRSSHEEGANWAADMVKDSFRRFKAGMTGQWDSFQRCKAIRERLRAPGAAPVTYEEFMALQRGKEDRNKLLQVGVVWVAVPEAIPFVLSFLPGVIPSTFENDADRAQRFRNFNAARVRAALALLDTVDKECLNKNEKKRVEFAQYREAAVRVMKAHTCEDAFGVFEAHTFALVPADTDAQQRRRARPRPPTTVEGMPGPLAKGLAKALGLCTPWMPAFLCRGPLREHLRKVAAGDAVLARTPLDALRGRELREAACARALDAAHPDERELRRRLAEWLRLTGAPLGVDDCDAGAERVFVPERAKAAMLAVNVVASARAARESELPKLLLGGPAL
Sbjct:    1 MLPLSESGNRSSHEEGANWAADMVKDSFRRFKAGMTGQWDSFQRCKAIRERLRAPGAAPVTYEEFMALQRGKEDRNKLLQVGVVWVAVPEAIPFVLSFLPGVIPSTFENDADRAQRFRNFNAARVRAALALLDTVDKECLNKNEKKRVEFAQYREAAVRVMKAHTCEDAFGVFEAHTFALVPADTDAQQRRRARPRPPTTVEGMPGPLAKGLAKALGLCTPWMPAFLCRGPLREHLRKVAAGDAVLARTPLDALRGRELREAACARALDAAHPDERELRRRLAEWLRLTGAPLGVDDCDAGAERVFVPERAKAAMLAVNVVASARAARESELPKLLLGGPAL 342          
BLAST of jgi.p|Trimin1|353363 vs. uniprot
Match: A0A7S0IMW7_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0IMW7_9EUKA)

HSP 1 Score: 113 bits (283), Expect = 3.980e-25
Identity = 95/315 (30.16%), Postives = 154/315 (48.89%), Query Frame = 1
Query:   67 MVKDSFRRFKAGMTGQWDSFQRCKAIRERLRAPGAAPVTYEEFMALQRGKEDRNKLLQVGVVWVAVPEAIPFVLSFLPGVIPSTFENDADRAQRFRNFNAARVRAALALLDTVDKECLNKNEKKRVEFAQYREAAVRVMKAHTCEDAFGVFEAHTFALVPADTDAQQRRRARPRPPTTVEGMPGPLAKGLAKALGLCTPWMPAFLCRGPLREHLRKVAAGDAVLARTPLDALRGRELREAACARALDAAHPDERELRRRLAEWLRLTGAPLGVDDCDAGAERVFVPERAKAAMLAVNVVASARAARE-SELPKLL 1008
             +  + R+F+ GM G   ++Q   AI +R++  G AP +Y+E   L++  ED  KLLQ G V++A PE    VL F P ++PSTFE +  R  R+R  +  R  A + LL  +D E + K  ++ +  A+  E A +++ A +   A  V E +T  +      + Q+   +P     ++G+P PL     + +G+    +P+   R  L +HL+ +   DA LART   +L   EL +A   R L      ++ELR  L  W  LT     V +          P+ A+  + A+ V A     RE ++LP +L
Sbjct:   47 QMGSALRKFQTGMGGIRRNWQEADAINKRVKR-GGAPASYQEVTLLRKKSEDNMKLLQAGFVYLAAPELATAVLYFSPKMLPSTFEGEEGRLNRWRQLSRLRSTAVVQLLWALDDEAVRKG-RRGLRGAERVERARQLLLARSPLRAARVVEDYTRPV-----SSSQQVAKKP-----LDGIPKPLLVAACRMIGIKFAPLPSMR-RQALHKHLQNLIDEDAALARTDWASLSHSELMDACLDRGLGGLGDSDKELRELLRGWRELTDEARFVSEA-------VPPDAARLRLAALAVCAVGSCRREKAKLPSVL 341          
BLAST of jgi.p|Trimin1|353363 vs. uniprot
Match: A0A7S0L1P3_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L1P3_9EUKA)

HSP 1 Score: 104 bits (260), Expect = 7.490e-22
Identity = 92/310 (29.68%), Postives = 143/310 (46.13%), Query Frame = 1
Query:   79 SFRRFKAGMTGQWDSFQRCKAIRERLRAPGAAPVTYEEFMALQRGKEDRNKLLQVGVVWVAVPEAIPFVLSFLPGVIPSTFENDADRAQRFRNFNAARVRAALALLDTVDKECLNKNEK--KRVEFAQYREAAVRVMKAHTCEDAFGVFEAHTFALVPADTDAQQRRRARPRPPTTVEGMPGPLAKGLAKALGLCTPWMPAFLCRGP----LREHLRKVAAGDAVLARTPLDALRGRELREAACARALDAAHPDERELRRRLAEWLRLT-----GAPLGVDDCDAGAERVFVPERAKAAMLAVNVVASAR 975
            +F++FK GM G  ++++    IR+R++  GA   T +E   L++  ED  KLLQ G V++ VPE    +L   P ++PSTFE D  R  R+R     R  A + LL  +++E + K ++  +  E  Q  E  +R     + +   GV     F      +  Q  ++        VEG+P P+ K   + +G+       F   G     LR+HL+ +   DA LART    L   +L +A   RAL      ++E+R+ L  W  LT       P GV            P R + A ++V+ VAS R
Sbjct:   58 AFKKFKMGMGGIRNNWRAAGTIRKRIKRGGAL-TTLQETTLLRKQGEDSMKLLQAGFVYLTVPEMATLMLCIYPKMLPSTFEGDEGRLNRWRQLQRMRTSAVMQLLWDLEEESVKKGKRGMRGSERVQIAEGLLR-----SRQPLQGVRVVEEFTRPTEGSSVQVAKKP-------VEGIPKPVLKAACRLIGI------QFALPGTRPAALRKHLQMLVEEDAALARTDWSTLSHTDLADACFDRALGCIGDSDKEMRQMLRCWCELTDESRFATPDGVTPD---------PARLRLAAMSVSAVASCR 339          
BLAST of jgi.p|Trimin1|353363 vs. uniprot
Match: A0A4D9CT86_9STRA (LETM1 domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CT86_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 1.690e-14
Identity = 80/322 (24.84%), Postives = 140/322 (43.48%), Query Frame = 1
Query:   70 VKDSFRRFKAGMTGQWDSFQRCKAIRERLRAPGAAPVTYEEFMALQRGKEDRNKLLQVGVVWVAVPEAIPFVLSFLPGVIPSTFENDADRAQRFRNFNAARVRAALALLDTVDKECLNKNEKKRVEFAQYREAAVRVMKAHTCEDAFGVFEAHTFALVPADTDAQQRRRARPRPPTTVEGMPGPLAKGLAKALGLCTPWMPAFLCRGPLREHLRKVAAGDAVLARTPLDALRGRELREAACARALDAAHPDERELRRRLAEWLRLTG----APLGVDDCDAGAERVFVP---ERAKAAMLAVNVVASARAARESELPKLLLG 1014
            + +S RR + G    W + ++   ++ R  A G   +T+ E+  +Q+   D  K + + +  ++ PE  PF+ SF P V+PST+ N  ++ QR +  N ARVR  +  L ++ +E +  + K   E  + R         HT   A           +      + +R  + R    +  +P P    +  A+G+   ++PA   R  L ++L K+   D VL  T +D L   +L +A   RAL         +R  L  +L+       AP  V   ++  E   V       + A+L +N+V   R A+E+   + L G
Sbjct:   73 IGNSLRRLQEGTVDLWGNTKQLGGLKRRF-ARGET-LTFPEYNLMQKTSGDIAKFVGLALFTMSKPEFTPFLCSFFPAVVPSTYLNSDEKLQRCQQRNFARVRGVVTHLMSLQQEAVAPHRK---ENDRMRHLRTMERLLHTTTKAGPGKALKQVGDLEYVLFCRPKRDGKGRQKADLRAVPRPFLVSVCNAIGMFHKFIPAAGLRTMLSDYLWKIDESDQVLLNTNVDKLGRDDLLDACAQRALSLGDASPDAMRANLKSYLKCVSRPSLAPPVVKKKESEQEGNVVALNENNMRFALLGLNMVGLVRDAKENSALRALFG 389          
BLAST of jgi.p|Trimin1|353363 vs. uniprot
Match: A0A1Z5JSS5_FISSO (LETM1 domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JSS5_FISSO)

HSP 1 Score: 82.0 bits (201), Expect = 1.120e-13
Identity = 82/299 (27.42%), Postives = 134/299 (44.82%), Query Frame = 1
Query:   70 VKDSFRRFKAGMTGQWDSFQRCKAIRERLRAPGAA---PVTYEEFMALQRGKEDRNKLLQVGVVWVAVPEAIPFVLSFLPGVIPSTFENDADRA--------QRFRNFNAARVRAALALLDTVDK--------ECLN------KNEKKRVEFAQYREAAVRVMKAHTCEDAFGVFEAHTFALVPADTDAQQRRRARPRPPTTVEGMPGPLAKGLAKAL------GLCTPWMPAFLCRGPLREHLRKVAAGDAVLARTPLD--ALRGRELREAACARALDAAHPDERELRRRLAEWLRLT 867
            ++   + F+ G   +W+S Q     R+ L+   ++    +++++++ LQ+GKEDR K+L +  +    P  +P+ L F P ++PSTF+NDA  A        QRF       + + LA L+   K          LN      K  K+    A Y +    +M     ED    F +  +   P  T A+Q+          + G+P  + KGL +A+      G+     P FL RG    HLRKV+  D  L +  +D  ++  + L E  C   +   + D  ELR +L EWL +T
Sbjct:   55 IRKQQKSFRDGCIERWES-QGAPETRKELQKKASSIQGGISFDDYIFLQKGKEDRGKVLNMVFLMWGAPRFLPYALWFNPDLLPSTFKNDAANADTTYETTAQRFARERTVSILSTLANLERQAKTQAAGGFLSSLNVLGGSAKKNKQTTLVAVYNQTKSLLMNPLQQEDIMQPFRSLVYKNEPF-TRAEQK----------LVGVPSCIVKGLNQAISGKPASGILNQLTPHFLVRGAFVNHLRKVSDTDDFLVQAGIDLESIPSKLLHET-CRERMLYGNCDT-ELRAQLHEWLSVT 339          
BLAST of jgi.p|Trimin1|353363 vs. uniprot
Match: B7FW20_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FW20_PHATC)

HSP 1 Score: 80.1 bits (196), Expect = 6.840e-13
Identity = 85/321 (26.48%), Postives = 140/321 (43.61%), Query Frame = 1
Query:  142 IRERLRAPGA--APVTYEEFMALQRGKEDRNKLLQVGVVWVAVPEAIPFVLSFLPGVIPSTFENDADRA---QRFRNFNAARVRAALAL------LDTVDKECLNKNEKKRVEFAQ---YREAAVRVMKAHTCEDAFGVF----EAHTFALVPADTDAQQR-------RRARPRPPTTVEGMPGPLAKGLAKALGLCTPWMPAFLCRGPLREHLRKVAAGDAVLARTPLD--ALRGRELREAACARALDAAHPDERELRRRLAEWLRLTGAPLGVDDCDAGAERVFVPERAKAAMLAVNVVASARAARESE--LPKLLLGG 1017
            ++ER +A  A  A + YEE+M LQ+GKEDR KL+ V  +    P  +P+ L F P ++PS F +    +   ++ R  + A +   L L      +  + K  +   +K++V+      + E     + + +C+   G      E   +  +P D DA  R       +R    PPT ++G    L   +  A G      P FL RG +  H++K+A  D  L +  +D   +  R L+EA   R +  A     EL+  L+ WLRL        D        F    A+ +++  + + + R  R     LP+LL  G
Sbjct:  128 LKERKKALSAVEAGIEYEEYMFLQKGKEDRGKLMNVVFLMWGAPRFLPYALMFNPEMLPSPFLSPGPESVLEKKSRQRSTAVLECLLQLEQQAKAVPALSKLNIFGGKKQQVKMNAMHTFNERVASFLISSSCQGHEGASRVLQEIGAYLYLPVDEDAPDRGDFSRKAKRLCDVPPTVIKG----LGSAIGNA-GFFASVSPNFLNRGKILGHVKKIADADHFLVQANIDLTTISWRLLQEACSDRLIGNAASTPDELQSMLSSWLRLVVYEPAKHD-----SMHFNSNLARTSLMGYHALQATRDGRSDSAVLPRLLFAG 438          
BLAST of jgi.p|Trimin1|353363 vs. uniprot
Match: A0A1E7F5N8_9STRA (LETM1 domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F5N8_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 5.000e-9
Identity = 91/368 (24.73%), Postives = 144/368 (39.13%), Query Frame = 1
Query:   70 VKDSFRRFKAGMTGQWDSFQRCKAIR-------ERLRAP------GAAP-------------VTYEEFMALQRGKEDRNKLLQVGVVWVAVPEAIPFVLSFLPGVIPSTFENDAD---RAQRFRNFNAARVRAALALLDTVDKEC--------LN-----KNEKKRVEFAQYREAAVRVMKAH--TCEDAFGVFEAHTF--ALVPADTDAQQRRRARPRPPTTVEGMPGPLAKGLAKAL---GLCTPWMPAFLCRGPLREHLRKVAAGDAVLA--RTPLDALRGRELREAACARALDAAHPDERELRRRLAEWLRLTGAPLGVDDCDAGAERVFVPERAKAAMLAVNVVASARAARESELPKLLLGGP 1020
            VKDS  R   G    W +  RC  IR       E+L+        G  P             VTY+EF+ L +GKEDR+KL+ V  +    P   P+ L F P ++P  F    D   +  +    +  R  A +  L +++ E         LN     K  ++  E     +   ++M A     +D   V   +T   AL   DT  +  +R        +  +P  +  G+  A+    +    MP F+ RG +  H++K+   D  L   +  LD L    L EA   R +      + E+R+ L  WL L+   +  +  +   E  F    AK A++    V+ AR  R +     L+  P
Sbjct:   53 VKDSVVRTVDGSKEMWGNHGRCNQIRAKQKDYREKLQKQWEFEEQGLTPKEMKGRLSKINGGVTYDEFIFLMKGKEDRSKLMNVAFMMWGAPRVFPYALMFYPNILPGPFAPQQDMSAKESKLEKLSRERTHAVIKTLVSLENEAKAVPALAKLNIFGKKKQARRMDEMDSMGKTIGQIMIASGPDSDDDGAVIAMNTMEDALYRPDTVTRAEQR--------LVNVPKCITNGILSAIDGSNILQVVMPHFMKRGQVLSHIQKLNDIDNFLVHEKVNLDDLSTFRLLEACSDRMIGGPGRTDEEMRKCLTNWLDLS-VNIPTERIEKTGE-YFNTNLAKTALMGYYSVSGARDDRSASYLSRLMFNP 410          
BLAST of jgi.p|Trimin1|353363 vs. uniprot
Match: UPI001E26F6F5 (mitochondrial proton/calcium exchanger protein isoform X1 n=2 Tax=Melitaea cinxia TaxID=113334 RepID=UPI001E26F6F5)

HSP 1 Score: 65.9 bits (159), Expect = 4.180e-8
Identity = 60/210 (28.57%), Postives = 99/210 (47.14%), Query Frame = 1
Query:  247 VVWVAVPE---AIPFVLSFLPGVIPSTFENDADRAQRFRNFNAARVRAALALLDTVDKECLNKNEKKRVEFAQYREAAVRVMKAHTCEDAFGVFEAHTFALVPADTDAQQRRRARPRPPTTVEGMPGPLAKGLAKALGLCTPWMPAFLCRGPLREHLRKVAAGDAVLARTPLDALRGRELREAACARALDAAHPDERELRRRLAEWLRLT 867
            +V++ VP    A+PFV+ F PG++PSTFE+ + +    +     ++  A    +T+D +   + + +  E A  +E +V   K  T  D     E   F+ +  D               T++ +  P    L K L + T  M A L R  L+  LR +AA D ++A+  +D+L   EL++A  AR + A    E  LR+ L  WL L+
Sbjct:  173 IVFILVPFLEFALPFVIKFFPGMLPSTFESKSQKEAVLKQHLKVKLEMAKFFQETLD-QMAPQAKNRHSELA--KEFSVFFNKIRTSGDVATSEEIMKFSKLFEDE-------------ITLDSLQRPHLVALCKVLNVSTIGMSALL-RFNLKMKLRSLAADDKMIAKEGVDSLNFSELQQACRARGMRAYGVSEERLRKELKNWLDLS 365          
BLAST of jgi.p|Trimin1|353363 vs. uniprot
Match: A0A448YUP1_9STRA (LETM1 domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YUP1_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 6.700e-8
Identity = 85/359 (23.68%), Postives = 134/359 (37.33%), Query Frame = 1
Query:   46 GANWAADM---VKDSFRRFKAGMTGQWDSFQRCKAIR-------ERLRAP------GAAP-------------VTYEEFMALQRGKEDRNKLLQVGVVWVAVPEAIPFVLSFLPGVIPSTFENDAD---RAQRFRNFNAARVRAALALLDTVDKECLNK---------NEKKRVEFAQYREAAVRVMKAHTCEDAFGVFEAHTFALV---PADTDAQQRRRARPRPPTTVEGMPGPLAKGLAKAL---GLCTPWMPAFLCRGPLREHLRKVAAGDAVLAR--TPLDALRGRELREAACARALDAAHPDERELRRRLAEWLRLTGAPLGVDDCDAGAERVFVPERAKAAMLAVNVVASAR 975
            G N+   M   VKDS  R   G    W +  RCK IR       E+L+        G  P             +TY+EF+ L +GKEDR KL+ +  +    P   P+ L F P ++P  F    D   +  + +  +  R  A +  +  ++ E  +           +KK+       ++  + +         G    +T   V   P      Q R  +         +P  +  G+  A+        +MP F+ RG +  H++K+   D  L      LD+L    L EA   R +     ++ E+R  L  WL L G       C    E  F    AK A++    V+ AR
Sbjct:   43 GGNFVVQMFGYVKDSLVRTVDGTKEMWANHGRCKQIRVKQKEYREKLQKQWEFEEKGLTPKEMRQRLSKVNGGITYDEFVFLVKGKEDRGKLMNMVFLMWGAPRFFPYALMFYPEILPGPFAPLPDASGKESKLQKLSRERTHAVIRTMLAIETEARSVPALAKLNIFGKKKQARQMDNMDSLGKTISQIMVTPGGGALAMNTMEDVLYSPGKITRAQERLVK---------VPKCITNGIMAAIDGPNAFQSFMPQFMKRGQILNHIQKLNDIDNFLIDEGVDLDSLSTARLLEACSDRMIGGPGQNDEEMREHLKNWLNL-GVIQPAQRCKETGE-FFNYNLAKMALMGFYCVSGAR 390          
BLAST of jgi.p|Trimin1|353363 vs. uniprot
Match: A0A8H7V6Z0_9FUNG (Letm1 RBD domain-containing protein n=1 Tax=Mucor saturninus TaxID=64648 RepID=A0A8H7V6Z0_9FUNG)

HSP 1 Score: 58.2 bits (139), Expect = 7.440e-6
Identity = 58/265 (21.89%), Postives = 105/265 (39.62%), Query Frame = 1
Query:   73 KDSFRRFKAGMTGQWDSFQRCKAIRERLRAPGAAPVTYEEFMALQRGKEDRNKLLQVGVVWVAVPEAIPFVLSFLPGVIPSTFENDADRAQRFRNFNAARVRAALALLDTVDKECLNKNEKKRVEFAQYREAAVRVMKAHTCEDAFGVFEAHTFALVPADTDAQQRRRARPRPPTTVEGMPGPLAKGLAKALGLCTPWMPAFLCRGPLREHLRKVAAGDAVLARTPLDALRGRELREAACARALDAAHPDERELRRRLAEWLRLT 867
            KD  R +K G+   W + +  KA++ R++  G   +   EF  + + K+D  KL+  G V++ +PE+IP ++ ++PG++P T   D+   +     +  R +    +L + +K                   A     + T         A+ F L+  D                      P      + +G+        L R  L +++  +   D +L +  +D L  +EL  A   R + +   DE  +RR L  WL LT
Sbjct:   85 KDLIRFYKDGLKLLWSNNKEAKALQLRVQNEGYT-LNRSEFQLIHQSKKDMLKLIPFGFVFMILPESIPLLVMYVPGMVPGTCLKDSQVQKTREKLDKVRQKMTANVLKSAEK---------------VDGIAPADFLSLTKFQRMAKHYAYDFDLIRIDR---------------------PHLASYCRFMGINNIGTQGML-RKRLEKYMNYINEDDKLLLKENVDELNIKELSHAVEERGMRSIDQDEENMRRGLKYWLSLT 311          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353363 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A836CMC6_9STRA1.500e-244100.00LETM1 domain-containing protein n=1 Tax=Tribonema ... [more]
A0A7S0IMW7_9EUKA3.980e-2530.16Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A7S0L1P3_9EUKA7.490e-2229.68Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A4D9CT86_9STRA1.690e-1424.84LETM1 domain-containing protein n=3 Tax=Monodopsid... [more]
A0A1Z5JSS5_FISSO1.120e-1327.42LETM1 domain-containing protein n=2 Tax=Fistulifer... [more]
B7FW20_PHATC6.840e-1326.48Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A1E7F5N8_9STRA5.000e-924.73LETM1 domain-containing protein n=1 Tax=Fragilario... [more]
UPI001E26F6F54.180e-828.57mitochondrial proton/calcium exchanger protein iso... [more]
A0A448YUP1_9STRA6.700e-823.68LETM1 domain-containing protein n=1 Tax=Pseudo-nit... [more]
A0A8H7V6Z0_9FUNG7.440e-621.89Letm1 RBD domain-containing protein n=1 Tax=Mucor ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_159contigContig_159:207965..211095 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|353363|estExt_Genemark1.C_Ctg_1590030
Max annot lvl2759|Eukaryota
EggNOG OGs2C4QK@1|root,2SCXU@2759|Eukaryota
Evalue1.26e-28
Seed ortholog2880.D8LRP1
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionLETM1-like
Ec32 orthologEc-12_000520.1
TranscriptId353685
TrackFilteredModels1
ProteinId353363
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353363gene_13871Tribonema minus UTEX_B_3156 geneContig_159 207965..211095 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13871_1exon_13871_1Tribonema minus UTEX_B_3156 exonContig_159 207965..208010 +
exon_13871_2exon_13871_2Tribonema minus UTEX_B_3156 exonContig_159 208883..209297 +
exon_13871_3exon_13871_3Tribonema minus UTEX_B_3156 exonContig_159 210209..210396 +
exon_13871_4exon_13871_4Tribonema minus UTEX_B_3156 exonContig_159 210716..211095 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13871CDS_13871Tribonema minus UTEX_B_3156 CDSContig_159 207965..208010 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353363Trimin1|353363|estExt_Genemark1.C_Ctg_1590030Tribonema minus UTEX_B_3156 polypeptideContig_159 207965..211095 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13871 ID=mRNA_13871|Name=jgi.p|Trimin1|353363|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1029bp|location=Sequence derived from alignment at Contig_159:207965..211095+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGCCCCTCAGTGAGTCTGGCAACCGCAGCAGCCACGAAGAAGGCGC
GAACTGGGCGGCGGACATGGTCAAGGACTCCTTCCGGCGCTTCAAGGCGG
GAATGACGGGCCAGTGGGACAGCTTCCAGCGCTGCAAGGCGATCCGTGAG
CGCCTGCGCGCGCCGGGCGCGGCGCCGGTGACGTACGAGGAGTTCATGGC
GCTGCAGCGCGGCAAGGAGGACCGCAACAAGCTGCTGCAGGTGGGGGTCG
TCTGGGTAGCTGTGCCGGAGGCGATCCCCTTCGTCCTGAGCTTCCTGCCG
GGGGTGATACCGTCGACGTTCGAGAACGACGCGGACCGCGCGCAGCGGTT
CCGGAACTTCAACGCGGCGCGCGTGCGCGCGGCGCTCGCGCTGCTCGACA
CTGTTGACAAGGAGTGCCTCAACAAGAACGAGAAGAAGCGCGTGGAGTTT
GCTCAGTACAGGGAGGCGGCGGTGCGCGTGATGAAGGCGCACACATGCGA
GGACGCGTTCGGCGTCTTTGAGGCGCACACGTTTGCGCTGGTGCCCGCGG
ACACGGACGCGCAGCAGCGGCGCCGCGCGCGGCCGCGGCCGCCGACCACG
GTGGAGGGGATGCCGGGCCCGCTGGCCAAGGGGCTCGCCAAGGCGCTGGG
GCTGTGCACGCCGTGGATGCCCGCGTTCCTGTGCCGCGGCCCGCTGCGCG
AGCACCTGCGCAAGGTCGCGGCGGGCGACGCGGTGCTCGCGCGCACGCCG
CTCGACGCGCTGCGCGGCCGCGAGCTGCGCGAGGCCGCGTGCGCGCGCGC
GCTCGACGCCGCGCACCCGGACGAGCGCGAGCTGCGGCGGCGCCTCGCCG
AGTGGCTGCGCCTTACGGGCGCGCCGCTCGGCGTTGACGACTGCGACGCC
GGCGCGGAGCGCGTCTTCGTCCCCGAGCGCGCCAAGGCGGCCATGCTCGC
CGTCAACGTCGTCGCGAGCGCGCGCGCCGCGCGCGAGAGCGAGCTCCCCA
AGCTCCTCCTCGGCGGGCCGGCGCTGTGA
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protein sequence of jgi.p|Trimin1|353363

>Trimin1|353363|estExt_Genemark1.C_Ctg_1590030 ID=Trimin1|353363|estExt_Genemark1.C_Ctg_1590030|Name=jgi.p|Trimin1|353363|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=343bp
MLPLSESGNRSSHEEGANWAADMVKDSFRRFKAGMTGQWDSFQRCKAIRE
RLRAPGAAPVTYEEFMALQRGKEDRNKLLQVGVVWVAVPEAIPFVLSFLP
GVIPSTFENDADRAQRFRNFNAARVRAALALLDTVDKECLNKNEKKRVEF
AQYREAAVRVMKAHTCEDAFGVFEAHTFALVPADTDAQQRRRARPRPPTT
VEGMPGPLAKGLAKALGLCTPWMPAFLCRGPLREHLRKVAAGDAVLARTP
LDALRGRELREAACARALDAAHPDERELRRRLAEWLRLTGAPLGVDDCDA
GAERVFVPERAKAAMLAVNVVASARAARESELPKLLLGGPAL*
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mRNA from alignment at Contig_159:207965..211095+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13871 ID=mRNA_13871|Name=jgi.p|Trimin1|353363|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3131bp|location=Sequence derived from alignment at Contig_159:207965..211095+ (Tribonema minus UTEX_B_3156 )
ATGCTGCCCCTCAGTGAGTCTGGCAACCGCAGCAGCCACGAAGAAGGTGA CACATGCGGCAGCACTGACCCATGCCAGCACTAACGACCCTGATCATGCT GGGTGTTTCGCATGCGCTGACTACGTGTGACACCACACCTGCAAGCAGCA GCAAGCACTGACGAACATGGTTGCGGTCATGAGGCGCCTCCTAATGGGCG GCCCCCGCAGCAGGAGGGAGCAGGCCAAGAGTCTCAACCTGAAGCCTTCA CGGCAGTTCCTTTGCCCTCTCATCGCTGTTTGAAGTTGAAGTTGACTAAT TTTATTGGAGCTGAGAGCTCTCTTAGGCTGAGCGCTCCAGCGGAGCCCGG CGTCTGCAGCGATGAAACGGGCCAGTACGCTGGCGGAGTTGACTCTGCTG GTTTCGCTACTGGTAGCAGAGGCAACCTTGCCAGCACATTGGACACCTGG CAATCGATGGCAGCAACAGCGTCGGCCTTGGTCCGACAGGCGGATGTGCG CCGCTGCAGTCGCTCAGCCACCCGCTTCTCTGCAGCAACAGCAGAGCGGG AGCAGCTTTGGCAGGACCTATGAGTCGGATCTGGTCCCAAAGAGGGAAAA TCAATTGGTGAAAGGTGAGAACAGTGCTGTCTGAAGCGAGAGTCTCAACG CACCTTTGCTGCCGACCAAGTAGCTATGTGGCTCACTCACTTCCTTCGGC TCATCTGAAGCTGCAACAGACCACAACATCCCCACATCCTACTGAGACGT GGTCCAGTAATTGCGGAATTGCGGATCGTGATCAGACAAATCATGCTCGT CCACACATACAGCGAACGGCGTGACTGCTGGTGTCACACAGTCATGCTCT TCGCACAGCAACACGCTGCTTCTCATGCAGACCATTGAGCACCTCCTGCG CTCCCACCCGCGCGCCAGGCGCGAACTGGGCGGCGGACATGGTCAAGGAC TCCTTCCGGCGCTTCAAGGCGGGAATGACGGGCCAGTGGGACAGCTTCCA GCGCTGCAAGGCGATCCGTGAGCGCCTGCGCGCGCCGGGCGCGGCGCCGG TGACGTACGAGGAGTTCATGGCGCTGCAGCGCGGCAAGGAGGACCGCAAC AAGCTGCTGCAGGTGGGGGTCGTCTGGGTAGCTGTGCCGGAGGCGATCCC CTTCGTCCTGAGCTTCCTGCCGGGGGTGATACCGTCGACGTTCGAGAACG ACGCGGACCGCGCGCAGCGGTTCCGGAACTTCAACGCGGCGCGCGTGCGC GCGGCGCTCGCGCTGCTCGACACTGTTGACAAGGAGTGCCTCAACAAGAA CGAGAAGAAGCGCGTGGAGTTTGCTCAGTACAGGTGAGTCTGCTCGTGGG GTGTTTCGGTGGCGGTGTGAAGAGGGGGGAAGCCTGCTTGCGTTGGAGTC TCTTTCTGGAGAAGGAGTGCTGCACTGAGTGCACATCCAATCCACGAAGA CGGGGCTTTTTGTGCCCCAAGCGAAATTAATTCAAGTCTACAGGTGAGCG CGCGCGCGCTGGCTCTGTTGACTGGCCCTGCGAGGTGTCATTGTGCGGCA GCGCTCCTACATGCGCATCACGCGCGTCCAGCAGCAAACGCCATTGCTGC GCGCAAGCGCTGGCGGCTGTAGACTAGTCAGGGAACGGGCAACGAGCGCG TGCGTCCGTTGGGCTTCCATTAAGGAGCGGGACTCACGTTAGTCATCTAT GGCAGACTCTTGCGGACTGGTGCAAGCCAGGCCCTGTGGCTCTGCAACGC CGCTGTCGCACACCAACAGGGGTTCCGGCAAATATCATAGTGTCCCAGCA GGAAAAATGTCTCAGTGCAGCGTCCCTGGCGCGTGGAGCGAGGAGCGCGG TGCGCCTGCTTCCTTGTGTGCTGTCGACGCCCGTAGCGCCGGTTACGCCG TCAGACAGCGCCCGTATTCAGCTGCGTCATTCCTTTGAGCCAGTCAGCAG CCGCTGCGCGAGGCAGCGCGCGCGCGCGCGCCTGCAGCGCCTGTTGTCGC GCTCGTCGTCAGCGCCGCCGCGCGTTCGGCTGCGCTTGGGGCTCGGTCCA TGCACCAGTGCCGGGCATCTCTCGGCTCAACGGCATCGACGACGGCGCAG CGCTTTCGAGCGTGGCCGCCACCCTCAGGCCGCTCGCATGCCTCCCAGCG CGCCGCCGTCCGCTGCGTCACGCCAGCACCCCACCGCACTGACTCCCCCC CCCCCCCCGCCCCCCCCATTCCCGCATCAACCGGTGCTTCCCAGGGAGGC GGCGGTGCGCGTGATGAAGGCGCACACATGCGAGGACGCGTTCGGCGTCT TTGAGGCGCACACGTTTGCGCTGGTGCCCGCGGACACGGACGCGCAGCAG CGGCGCCGCGCGCGGCCGCGGCCGCCGACCACGGTGGAGGGGATGCCGGG CCCGCTGGCCAAGGGGCTCGCCAAGGCGCTGGGTGAGCGCTGCTGCTGTC GTGCGAATATTTGCGCGTCGGTGATGGTTTTGTGGGGTTGGGGGAGAGCT GCTGCTGCCGTCGCGTGGGCATGTGGACGATGACGCGTGAGCTGGAGTGA GCTGCTGGTGGCGCACTCCAAGATTTTTGTGATAGTAACTCGTGATGGTA ACTCATGAATTCGTGTGAAGCTGCTGCTGCTGCCGTCGTGCAAAATCCTT AATGGTGATTTGGGTCAGCTGATTAGCTGGCATTTCATCCCACCCCTTGA TGCTCCCGCTTCGCGACTGCGCGCCGCACTGCCCCCCCCCCCCCCCCCTA GGGCTGTGCACGCCGTGGATGCCCGCGTTCCTGTGCCGCGGCCCGCTGCG CGAGCACCTGCGCAAGGTCGCGGCGGGCGACGCGGTGCTCGCGCGCACGC CGCTCGACGCGCTGCGCGGCCGCGAGCTGCGCGAGGCCGCGTGCGCGCGC GCGCTCGACGCCGCGCACCCGGACGAGCGCGAGCTGCGGCGGCGCCTCGC CGAGTGGCTGCGCCTTACGGGCGCGCCGCTCGGCGTTGACGACTGCGACG CCGGCGCGGAGCGCGTCTTCGTCCCCGAGCGCGCCAAGGCGGCCATGCTC GCCGTCAACGTCGTCGCGAGCGCGCGCGCCGCGCGCGAGAGCGAGCTCCC CAAGCTCCTCCTCGGCGGGCCGGCGCTGTGA
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Coding sequence (CDS) from alignment at Contig_159:207965..211095+

>mRNA_13871 ID=mRNA_13871|Name=jgi.p|Trimin1|353363|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1029bp|location=Sequence derived from alignment at Contig_159:207965..211095+ (Tribonema minus UTEX_B_3156 )
ATGCTGCCCCTCAGTGAGTCTGGCAACCGCAGCAGCCACGAAGAAGGCGC
GAACTGGGCGGCGGACATGGTCAAGGACTCCTTCCGGCGCTTCAAGGCGG
GAATGACGGGCCAGTGGGACAGCTTCCAGCGCTGCAAGGCGATCCGTGAG
CGCCTGCGCGCGCCGGGCGCGGCGCCGGTGACGTACGAGGAGTTCATGGC
GCTGCAGCGCGGCAAGGAGGACCGCAACAAGCTGCTGCAGGTGGGGGTCG
TCTGGGTAGCTGTGCCGGAGGCGATCCCCTTCGTCCTGAGCTTCCTGCCG
GGGGTGATACCGTCGACGTTCGAGAACGACGCGGACCGCGCGCAGCGGTT
CCGGAACTTCAACGCGGCGCGCGTGCGCGCGGCGCTCGCGCTGCTCGACA
CTGTTGACAAGGAGTGCCTCAACAAGAACGAGAAGAAGCGCGTGGAGTTT
GCTCAGTACAGGGAGGCGGCGGTGCGCGTGATGAAGGCGCACACATGCGA
GGACGCGTTCGGCGTCTTTGAGGCGCACACGTTTGCGCTGGTGCCCGCGG
ACACGGACGCGCAGCAGCGGCGCCGCGCGCGGCCGCGGCCGCCGACCACG
GTGGAGGGGATGCCGGGCCCGCTGGCCAAGGGGCTCGCCAAGGCGCTGGG
GCTGTGCACGCCGTGGATGCCCGCGTTCCTGTGCCGCGGCCCGCTGCGCG
AGCACCTGCGCAAGGTCGCGGCGGGCGACGCGGTGCTCGCGCGCACGCCG
CTCGACGCGCTGCGCGGCCGCGAGCTGCGCGAGGCCGCGTGCGCGCGCGC
GCTCGACGCCGCGCACCCGGACGAGCGCGAGCTGCGGCGGCGCCTCGCCG
AGTGGCTGCGCCTTACGGGCGCGCCGCTCGGCGTTGACGACTGCGACGCC
GGCGCGGAGCGCGTCTTCGTCCCCGAGCGCGCCAAGGCGGCCATGCTCGC
CGTCAACGTCGTCGCGAGCGCGCGCGCCGCGCGCGAGAGCGAGCTCCCCA
AGCTCCTCCTCGGCGGGCCGGCGCTGTGA
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