mRNA_1386 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|161720 vs. uniprot
Match: A0A835Z5I5_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5I5_9STRA) HSP 1 Score: 572 bits (1475), Expect = 2.380e-206 Identity = 286/286 (100.00%), Postives = 286/286 (100.00%), Query Frame = 1 Query: 1 MADAPTNRISVKRFDMSKLTKKHFTLVLTGKRGSGKSFLCKDIIFHLHEAKYPRCCIFSQTENANGFFSEFVPGIFIHSPFDLNVLANIIKQQKDLIMRQKLGQIPADQDTRLLLVLDDCAYDRRILASPVMREIMMNGRHYFISLIVTLQYLVDLAPSLRANVDVALFLKDNIRGNRERVWKHFAGFYENFHVFEAVFESCTANFECFCVDNTLSSTRHEDIVSYYKASDRDFRFGHPSLWKFHDRVYLSEEDEFLMRQQMAVQQAVQQSVTKVTSSGVITVVRE 858 MADAPTNRISVKRFDMSKLTKKHFTLVLTGKRGSGKSFLCKDIIFHLHEAKYPRCCIFSQTENANGFFSEFVPGIFIHSPFDLNVLANIIKQQKDLIMRQKLGQIPADQDTRLLLVLDDCAYDRRILASPVMREIMMNGRHYFISLIVTLQYLVDLAPSLRANVDVALFLKDNIRGNRERVWKHFAGFYENFHVFEAVFESCTANFECFCVDNTLSSTRHEDIVSYYKASDRDFRFGHPSLWKFHDRVYLSEEDEFLMRQQMAVQQAVQQSVTKVTSSGVITVVRE Sbjct: 1 MADAPTNRISVKRFDMSKLTKKHFTLVLTGKRGSGKSFLCKDIIFHLHEAKYPRCCIFSQTENANGFFSEFVPGIFIHSPFDLNVLANIIKQQKDLIMRQKLGQIPADQDTRLLLVLDDCAYDRRILASPVMREIMMNGRHYFISLIVTLQYLVDLAPSLRANVDVALFLKDNIRGNRERVWKHFAGFYENFHVFEAVFESCTANFECFCVDNTLSSTRHEDIVSYYKASDRDFRFGHPSLWKFHDRVYLSEEDEFLMRQQMAVQQAVQQSVTKVTSSGVITVVRE 286
BLAST of jgi.p|Trimin1|161720 vs. uniprot
Match: A0A836CN20_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN20_9STRA) HSP 1 Score: 483 bits (1244), Expect = 4.100e-171 Identity = 231/285 (81.05%), Postives = 268/285 (94.04%), Query Frame = 1 Query: 4 ADAPTNRISVKRFDMSKLTKKHFTLVLTGKRGSGKSFLCKDIIFHLHEAKYPRCCIFSQTENANGFFSEFVPGIFIHSPFDLNVLANIIKQQKDLIMRQKLGQIPADQDTRLLLVLDDCAYDRRILASPVMREIMMNGRHYFISLIVTLQYLVDLAPSLRANVDVALFLKDNIRGNRERVWKHFAGFYENFHVFEAVFESCTANFECFCVDNTLSSTRHEDIVSYYKASDRDFRFGHPSLWKFHDRVYLSEEDEFLMRQQMAVQQAVQQSVTKVTSSGVITVVRE 858 ADA TNRISVKRFD+S L +K+FT+ LTGKRG+GKS+L KDI++HLH+A +PRCC+FSQTE+ANGFFS FVPG+FIHSPFDLNVLANI+KQQKDLIM+QKLGQIPADQDTRLL+VLDDCAYD++IL+SP++REIMMNGRHYFISL+VTLQYLVD APSLRANVDVALFLKDNI+GNRER+WKHF G + ++ VFEAVFESCTANFEC CVDNT+SST +EDIVSYYKA + +F+FG+ SLW+FHD+VYLSEEDEF+MRQQMAVQQAVQQSVTKVTSSG+ITVVRE Sbjct: 4 ADANTNRISVKRFDISMLARKNFTMTLTGKRGTGKSYLTKDIMYHLHKAGFPRCCVFSQTESANGFFSTFVPGVFIHSPFDLNVLANILKQQKDLIMKQKLGQIPADQDTRLLIVLDDCAYDKKILSSPIIREIMMNGRHYFISLVVTLQYLVDFAPSLRANVDVALFLKDNIKGNRERIWKHFCGMFSDYKVFEAVFESCTANFECLCVDNTISSTDNEDIVSYYKAGEHEFKFGNRSLWRFHDKVYLSEEDEFVMRQQMAVQQAVQQSVTKVTSSGLITVVRE 288
BLAST of jgi.p|Trimin1|161720 vs. uniprot
Match: A0A835Z4N1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4N1_9STRA) HSP 1 Score: 362 bits (929), Expect = 3.330e-123 Identity = 165/283 (58.30%), Postives = 226/283 (79.86%), Query Frame = 1 Query: 10 APTNRISVKRFDMSKLTKKHFTLVLTGKRGSGKSFLCKDIIFHLHEAKYPRCCIFSQTENANGFFSEFVPGIFIHSPFDLNVLANIIKQQKDLIMRQKLGQIPADQDTRLLLVLDDCAYDRRILASPVMREIMMNGRHYFISLIVTLQYLVDLAPSLRANVDVALFLKDNIRGNRERVWKHFAGFYENFHVFEAVFESCTANFECFCVDNTLSSTRHEDIVSYYKASDRDFRFGHPSLWKFHDRVYLSEEDEFLMRQQMAVQQAVQQSVTKVTSSGVITVVRE 858 A T RISVK+FD SKL +KHF ++T KRGSGKS+L KDI++ LH +PRCCIFS TE AN FFS+F+P +F+HSP DLN L +I QK++I++Q+ G + ++DTR+L+VLDDC++D++ S V+RE++ NGRHY ++LI+TLQYL+DL P++R+NVD F +DNI+ NRER+++ FAGFY ++ FEAVFE+CTAN+EC CVDNT+SST H DIVSYYKA DF+FG PSLWKFHD++++SEEDE+++RQ+M +Q A + S+TKV+ + ITVV E Sbjct: 3 ADTTRISVKKFDPSKLVQKHFVAIMTAKRGSGKSYLTKDILYRLHCEGFPRCCIFSGTEGANKFFSDFIPEVFVHSPLDLNTLTHIWNTQKEIILKQRCGHLDENEDTRILIVLDDCSFDKKTFTSQVIREMLCNGRHYKLTLIITLQYLLDLPPAMRSNVDFGFFFRDNIKTNRERLYRQFAGFYPDYRTFEAVFEACTANYECMCVDNTVSSTDHTDIVSYYKAEAVDFKFGPPSLWKFHDKLFISEEDEYILRQKMTLQSASKNSMTKVSGNSSITVVHE 285
BLAST of jgi.p|Trimin1|161720 vs. uniprot
Match: A0A835Z4P3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4P3_9STRA) HSP 1 Score: 233 bits (593), Expect = 3.010e-72 Identity = 115/249 (46.18%), Postives = 170/249 (68.27%), Query Frame = 1 Query: 37 RFDMSKLTKKHFTLVLTGKRGSGKSFLCKDIIFHLHEAKYPRCCIFSQTENANGFFSEFVPGIFIHSPFDLNVLANIIKQQKDLIMRQKLGQIPADQDTRLLLVLDDCAYDRRILASPVMREIMMNGRHYFISLIVTLQYLVDLAPSLRANVDVALFLKDNIRGNRERVWKHFAGFYENFHVFEAVFESCTANFECFCVDNTLSSTRHEDIVSYYKASDR-DFRFGHPSLWKFHDRVYLSEEDEFLMRQ 780 +FDMS++++ + + GKRGSGKS L KDI++HLH A+ PRC FS TE+AN FFS FVP +F+H+ + + L+N+ + QK+L M++ +GQ+P DTRL ++LDDCA+D+ ++ S V++EI MNGRH+ + IVTLQYL+DL S+R+NVDV FLK+ N+ER++ GF F F+ +F + T+N+E F V+ S+ + I+ YYKA +FRFG S+W+FH VY S D ++ Q Sbjct: 7 KFDMSEVSRSPACVAICGKRGSGKSVLIKDILYHLHVARVPRCVCFSATEDANQFFSGFVPDVFVHA-LNHDTLSNMWQAQKELAMQKAVGQLPPGTDTRLAIILDDCAFDKTVMKSAVLKEIFMNGRHHGVFFIVTLQYLIDLNVSMRSNVDVFFFLKELNLKNQERIYHESCGFLPCFGAFQDLFMASTSNYEAFVVNGRCKSSDAQQIIHYYKADPTLNFRFGPASIWRFHSTVYESATDRYVRMQ 254
BLAST of jgi.p|Trimin1|161720 vs. uniprot
Match: A0A835YWY0_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWY0_9STRA) HSP 1 Score: 225 bits (574), Expect = 1.840e-69 Identity = 111/274 (40.51%), Postives = 177/274 (64.60%), Query Frame = 1 Query: 37 RFDMSKLTKKHFTLVLTGKRGSGKSFLCKDIIFHLHEAKYPRCCIFSQTENANGFFSEFVPGIFIHSPFDLNVLANIIKQQKDLIMRQKLGQIPADQDTRLLLVLDDCAYDRRILASPVMREIMMNGRHYFISLIVTLQYLVDLAPSLRANVDVALFLKDNIRGNRERVWKHFAGFYENFHVFEAVFESCTANFECFCVDNTLSSTRHEDIVSYYKA-SDRDFRFGHPSLWKFHDRVYLSEEDEFLMRQQMAVQQAVQQSVTKVTSSGVITVVR 855 +FD ++T+ + + GKRG+GKS L KD+++HL+ A PRC FS TE AN +F F+P +F+H P D + L + K QK+L++++++GQ+ D DTRL+LV+DDCAY ++++ S +REI MNGRH+ I IVTLQYL+DL ++R+NVD +LK+ N+ER++ GF +F F+ +F + TAN+E F V++ S + IV++Y+A ++ +F++G P+LW++HD VY S D++ Q+ T+ G +VR Sbjct: 7 KFDPKEMTRSPACVAIVGKRGTGKSMLIKDLLYHLNLAGVPRCICFSATEEANSYFGTFLPSVFVH-PLDPDTLDRVWKAQKELVLQKRVGQLNPDTDTRLVLVMDDCAYHKQMMKSATLREIFMNGRHHGIYFIVTLQYLIDLNVAMRSNVDCWFYLKELSHKNQERIYNESCGFLPSFLTFQDLFMASTANYEAFVVNSRCKSNDPQKIVAHYRADANLNFKYGAPALWRYHDEVYESASDKYQRLQRTQQDSRPMSEATRSRKGGNTIIVR 279
BLAST of jgi.p|Trimin1|161720 vs. uniprot
Match: B5LWH6_9PHYC (Putative VV A32 ATPase n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWH6_9PHYC) HSP 1 Score: 205 bits (522), Expect = 1.680e-61 Identity = 99/236 (41.95%), Postives = 152/236 (64.41%), Query Frame = 1 Query: 70 FTLVLTGKRGSGKSFLCKDIIFHLHEAKYPRCCIFSQTENANGFFSEFVPGIFIHSPFDL-NVLANIIKQQKDLIMRQKLGQIPADQDTRLLLVLDDCAYDRRILASPVMREIMMNGRHYFISLIVTLQYLVDLAPSLRANVDVALFLKDNIRGNRERVWKHFAGFYENFHVFEAVFESCTANFECFCVDNTLSSTRHEDIVSYYKAS-DRDFRFGHPSLWKFHDRVYLSEEDEFL 771 F V+ GK+ +GKS L KDI++HLH+ K PR C+FS TE +NGF+ EFVPG+FI+ D+ N L I+ QK+ M+++LG+ D D+R+ +VLDD Y + IL S ++R+I MNGRH+ I L+V QY +D+ LR N D LK N + + + + + G +E F+ V E+CT +++C +DNT ST D+ ++KA R+F+FG LW++HDR +++E+ +L Sbjct: 32 FNAVVIGKKHTGKSTLIKDILYHLHKKKVPRMCVFSGTEESNGFYKEFVPGLFIYDDSDVENKLNEIVDSQKETAMQKQLGEASEDLDSRIAIVLDDVGYKKNILKSEIIRQIFMNGRHHQIYLVVACQYCMDVGQDLRTNADYVYVLKQNNMSSIKNLHETYFGTFEKKKDFQTVLEACTQDYQCLVLDNTKPSTMTTDVCFWFKAKYSRNFKFGCSQLWEYHDRWFMTEKQRYL 267
BLAST of jgi.p|Trimin1|161720 vs. uniprot
Match: A0A836CRE2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CRE2_9STRA) HSP 1 Score: 203 bits (517), Expect = 3.740e-61 Identity = 104/253 (41.11%), Postives = 161/253 (63.64%), Query Frame = 1 Query: 37 RFDMSKLTKKHFTLVLTGKRGSGKSFLCKDIIFHLHEAKYPRCCIFSQTENANGFFSEFVPGIFIHSPFDLNVLANIIKQQKDLIMRQKLGQIPADQDTRLLLVLDDCAYDRRILASPVMREIMMNGRHYFISLIVTLQYLVDLAPSLRANVDVALFLKDNIRGNRERVWKHFAGFYENFHVFEAVFESCTANFECFCVDNTLSSTRHEDIVSYYKA-SDRDFRFGHPSLWKFHDRVYLSEEDEFLMRQQMAV 792 RFD +++K+ + + G RG+GKS L KDI++H++EA PRC +FS TE AN +FSEFVPG+F+H P D + L ++ ++QK+L++++ G +PA +T L+LVLDDCA++R+ YL+DL ++R+NVD+ FLK+ R NRE+++K GF N+HVFE +F TA++E F V++ +S+ EDIV +YKA + +R+G P LW++H VY S + + RQQ A+ Sbjct: 7 RFDPREISKRPVCIAIVGMRGTGKSVLLKDILYHINEAGAPRCVVFSGTEGANSYFSEFVPGVFVH-PMDQDTLHSVWERQKELVLKKAAGGLPASTNTSLVLVLDDCAFNRK--------------------------YLIDLNVAMRSNVDIYFFLKELNRMNREKIYKETCGFLPNYHVFEQLFNDATADYETFVVNSRCTSSNPEDIVHHYKADAGLQYRYGPPCLWRYHHSVYESPQQRY-QRQQEAL 231
BLAST of jgi.p|Trimin1|161720 vs. uniprot
Match: Q6XM75_9PHYC (FirrV-1-A12 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM75_9PHYC) HSP 1 Score: 202 bits (514), Expect = 3.580e-60 Identity = 103/257 (40.08%), Postives = 161/257 (62.65%), Query Frame = 1 Query: 25 ISVKRFDMSKLTKKHFTLVLTGKRGSGKSFLCKDIIFHLHEAKYPRCCIFSQTENANGFFSEFVPGIFIHSPFDLNV----LANIIKQQKDLIMRQKLGQIPADQDTRLLLVLDDCAYDRRILASPVMREIMMNGRHYFISLIVTLQYLVDLAPSLRANVDVALFLKDNIRGNRERVWKHFAGFYENFHVFEAVFESCTANFECFCVDNTLSSTRHEDIVSYYKAS-DRDFRFGHPSLWKFHDRVYLSEEDEFLMRQ 780 I + F+ KHF V+ GK+ +GKS L KDI++++H+ K PR C+FS TE +NGF+ EF+P +FI FD ++ L I++ QK + M+++LG+ D D+R+++VLDD Y + L ++R+I MNGRH+ ISLIV QY +DLA LR N D LK N + + + + + G +E F+ V E+CTA+++C +DNT ST D+ +YKA ++++FG P LW++H R Y+SE+ + +Q Sbjct: 6 IKLSAFNAKAACSKHFNAVVIGKKHTGKSTLIKDILYNVHKQKVPRICVFSGTEESNGFYREFIPDLFI---FDDSMVEEKLTQIVESQKKIGMQKQLGECGDDVDSRIVVVLDDVGYKKNTLKCEILRQIFMNGRHHQISLIVACQYCMDLAIDLRTNADYVFVLKQNNMNSIKNLHETYFGSFEKKKDFQTVLEACTADYQCLVLDNTKPSTNTTDVCFWYKAKYGKEYKFGCPLLWEYHGRWYMSEKQRYQSQQ 259
BLAST of jgi.p|Trimin1|161720 vs. uniprot
Match: A0A6C0JD13_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0JD13_9ZZZZ) HSP 1 Score: 198 bits (504), Expect = 4.180e-59 Identity = 97/250 (38.80%), Postives = 153/250 (61.20%), Query Frame = 1 Query: 25 ISVKRFDMSKLTKKHFTLVLTGKRGSGKSFLCKDIIFHLHEAKYPRCCIFSQTENANGFFSEFVPGIFIHSPFDLNVLANIIKQQKDLIMRQKLGQIPADQDTRLLLVLDDCAYDRRILASPVMREIMMNGRHYFISLIVTLQYLVDLAPSLRANVDVALFLKDNIRGNRERVWKHFAGFYENFHVFEAVFESCTANFECFCVDNTLSSTRHEDIVSYYKA-SDRDFRFGHPSLWKFHDRVY--LSEEDE 765 I +K+FDMS + H +V+ GKRG+GKS+L KD +FH ++ P + S TE N +FS F+P IFIH + ++++ N++K+Q D+I + G+ D D R L+ DDC YD + MR I MNGRH+ ++ ++T+Q+ + + P LR N+D L++NI NR R+++H+AG + +F +F + + CT NFEC + N S + ED V +YKA S DF+ G WK+++ Y E+D+ Sbjct: 3 IKLKKFDMSTIAD-HQVIVMIGKRGTGKSYLLKDFLFHKNDI--PVGTVVSPTEKMNKYFSHFIPPIFIHDEYSVDLVRNVLKRQGDIIKKINNGEYGDDVDPRAFLIFDDCLYDDKWTKDKNMRAIFMNGRHFKLTFLLTMQFPLGIKPHLRTNIDYTFILRENIVSNRRRIYEHYAGMFPSFDIFCRIMDQCTENFECLVIHNNSKSNKIEDQVFWYKAESHEDFKLGSDEFWKYNNENYDDTGEQDD 249
BLAST of jgi.p|Trimin1|161720 vs. uniprot
Match: A0A6C0F6X2_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0F6X2_9ZZZZ) HSP 1 Score: 194 bits (494), Expect = 1.290e-57 Identity = 97/246 (39.43%), Postives = 153/246 (62.20%), Query Frame = 1 Query: 25 ISVKRFDMSKLTKKHFTLVLTGKRGSGKSFLCKDIIFHLHEAKYPRCCIFSQTENANGFFSEFVPGIFIHSPFDLNVLANIIKQQKDLIMRQKLGQIPADQDTRLLLVLDDCAYDRRILASPVMREIMMNGRHYFISLIVTLQYLVDLAPSLRANVDVALFLKDNIRGNRERVWKHFAGFYENFHVFEAVFESCTANFECFCVDNTLSSTRHEDIVSYYKASDR-DFRFGHPSLWKFHDRVYLSEE 759 + +K+F+++++ K +VL GKR +GKSFLC+DI++H H+ P + S TE AN F+ + VP +FIH F ++++N++ +QK +I + G A D R L+LDDC YD MR + MNGRHY + ++T+QY + + P+LR N+D L++N NR+R+++H+AG + NF +F V + CT N+EC ++N S + ED V +YKA R DF+ G PS WKF + +E+ Sbjct: 5 LELKKFNINEI-KDDKVVVLIGKRDTGKSFLCRDILYH-HQ-NIPVGQVISGTEGANQFYQKIVPKLFIHDEFKPDIVSNMLARQKMMIEKMNGGGSDASIDPRAFLILDDCLYDNTWSKDKNMRSVFMNGRHYKLLFLLTMQYALGIPPNLRTNIDYVFILRENYVSNRKRLYEHYAGMFPNFEMFCQVMDQCTENYECLVINNNAKSNKLEDQVFWYKAEPRPDFKIGAPSFWKFSQENFTNEK 247 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|161720 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_1386 ID=mRNA_1386|Name=jgi.p|Trimin1|161720|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=861bp|location=Sequence derived from alignment at Contig_18:911066..911926+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGCCGACGCACCAACGAATCGCATCTCTGTAAAGAGATTTGACATGTCback to top protein sequence of jgi.p|Trimin1|161720 >Trimin1|161720|e_gw1.18.340.1 ID=Trimin1|161720|e_gw1.18.340.1|Name=jgi.p|Trimin1|161720|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=287bp MADAPTNRISVKRFDMSKLTKKHFTLVLTGKRGSGKSFLCKDIIFHLHEAback to top mRNA from alignment at Contig_18:911066..911926+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_1386 ID=mRNA_1386|Name=jgi.p|Trimin1|161720|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=861bp|location=Sequence derived from alignment at Contig_18:911066..911926+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_18:911066..911926+ >mRNA_1386 ID=mRNA_1386|Name=jgi.p|Trimin1|161720|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=861bp|location=Sequence derived from alignment at Contig_18:911066..911926+ (Tribonema minus UTEX_B_3156 )back to top |