mRNA_1386 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|161720
Unique NamemRNA_1386
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|161720 vs. uniprot
Match: A0A835Z5I5_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5I5_9STRA)

HSP 1 Score: 572 bits (1475), Expect = 2.380e-206
Identity = 286/286 (100.00%), Postives = 286/286 (100.00%), Query Frame = 1
Query:    1 MADAPTNRISVKRFDMSKLTKKHFTLVLTGKRGSGKSFLCKDIIFHLHEAKYPRCCIFSQTENANGFFSEFVPGIFIHSPFDLNVLANIIKQQKDLIMRQKLGQIPADQDTRLLLVLDDCAYDRRILASPVMREIMMNGRHYFISLIVTLQYLVDLAPSLRANVDVALFLKDNIRGNRERVWKHFAGFYENFHVFEAVFESCTANFECFCVDNTLSSTRHEDIVSYYKASDRDFRFGHPSLWKFHDRVYLSEEDEFLMRQQMAVQQAVQQSVTKVTSSGVITVVRE 858
            MADAPTNRISVKRFDMSKLTKKHFTLVLTGKRGSGKSFLCKDIIFHLHEAKYPRCCIFSQTENANGFFSEFVPGIFIHSPFDLNVLANIIKQQKDLIMRQKLGQIPADQDTRLLLVLDDCAYDRRILASPVMREIMMNGRHYFISLIVTLQYLVDLAPSLRANVDVALFLKDNIRGNRERVWKHFAGFYENFHVFEAVFESCTANFECFCVDNTLSSTRHEDIVSYYKASDRDFRFGHPSLWKFHDRVYLSEEDEFLMRQQMAVQQAVQQSVTKVTSSGVITVVRE
Sbjct:    1 MADAPTNRISVKRFDMSKLTKKHFTLVLTGKRGSGKSFLCKDIIFHLHEAKYPRCCIFSQTENANGFFSEFVPGIFIHSPFDLNVLANIIKQQKDLIMRQKLGQIPADQDTRLLLVLDDCAYDRRILASPVMREIMMNGRHYFISLIVTLQYLVDLAPSLRANVDVALFLKDNIRGNRERVWKHFAGFYENFHVFEAVFESCTANFECFCVDNTLSSTRHEDIVSYYKASDRDFRFGHPSLWKFHDRVYLSEEDEFLMRQQMAVQQAVQQSVTKVTSSGVITVVRE 286          
BLAST of jgi.p|Trimin1|161720 vs. uniprot
Match: A0A836CN20_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN20_9STRA)

HSP 1 Score: 483 bits (1244), Expect = 4.100e-171
Identity = 231/285 (81.05%), Postives = 268/285 (94.04%), Query Frame = 1
Query:    4 ADAPTNRISVKRFDMSKLTKKHFTLVLTGKRGSGKSFLCKDIIFHLHEAKYPRCCIFSQTENANGFFSEFVPGIFIHSPFDLNVLANIIKQQKDLIMRQKLGQIPADQDTRLLLVLDDCAYDRRILASPVMREIMMNGRHYFISLIVTLQYLVDLAPSLRANVDVALFLKDNIRGNRERVWKHFAGFYENFHVFEAVFESCTANFECFCVDNTLSSTRHEDIVSYYKASDRDFRFGHPSLWKFHDRVYLSEEDEFLMRQQMAVQQAVQQSVTKVTSSGVITVVRE 858
            ADA TNRISVKRFD+S L +K+FT+ LTGKRG+GKS+L KDI++HLH+A +PRCC+FSQTE+ANGFFS FVPG+FIHSPFDLNVLANI+KQQKDLIM+QKLGQIPADQDTRLL+VLDDCAYD++IL+SP++REIMMNGRHYFISL+VTLQYLVD APSLRANVDVALFLKDNI+GNRER+WKHF G + ++ VFEAVFESCTANFEC CVDNT+SST +EDIVSYYKA + +F+FG+ SLW+FHD+VYLSEEDEF+MRQQMAVQQAVQQSVTKVTSSG+ITVVRE
Sbjct:    4 ADANTNRISVKRFDISMLARKNFTMTLTGKRGTGKSYLTKDIMYHLHKAGFPRCCVFSQTESANGFFSTFVPGVFIHSPFDLNVLANILKQQKDLIMKQKLGQIPADQDTRLLIVLDDCAYDKKILSSPIIREIMMNGRHYFISLVVTLQYLVDFAPSLRANVDVALFLKDNIKGNRERIWKHFCGMFSDYKVFEAVFESCTANFECLCVDNTISSTDNEDIVSYYKAGEHEFKFGNRSLWRFHDKVYLSEEDEFVMRQQMAVQQAVQQSVTKVTSSGLITVVRE 288          
BLAST of jgi.p|Trimin1|161720 vs. uniprot
Match: A0A835Z4N1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4N1_9STRA)

HSP 1 Score: 362 bits (929), Expect = 3.330e-123
Identity = 165/283 (58.30%), Postives = 226/283 (79.86%), Query Frame = 1
Query:   10 APTNRISVKRFDMSKLTKKHFTLVLTGKRGSGKSFLCKDIIFHLHEAKYPRCCIFSQTENANGFFSEFVPGIFIHSPFDLNVLANIIKQQKDLIMRQKLGQIPADQDTRLLLVLDDCAYDRRILASPVMREIMMNGRHYFISLIVTLQYLVDLAPSLRANVDVALFLKDNIRGNRERVWKHFAGFYENFHVFEAVFESCTANFECFCVDNTLSSTRHEDIVSYYKASDRDFRFGHPSLWKFHDRVYLSEEDEFLMRQQMAVQQAVQQSVTKVTSSGVITVVRE 858
            A T RISVK+FD SKL +KHF  ++T KRGSGKS+L KDI++ LH   +PRCCIFS TE AN FFS+F+P +F+HSP DLN L +I   QK++I++Q+ G +  ++DTR+L+VLDDC++D++   S V+RE++ NGRHY ++LI+TLQYL+DL P++R+NVD   F +DNI+ NRER+++ FAGFY ++  FEAVFE+CTAN+EC CVDNT+SST H DIVSYYKA   DF+FG PSLWKFHD++++SEEDE+++RQ+M +Q A + S+TKV+ +  ITVV E
Sbjct:    3 ADTTRISVKKFDPSKLVQKHFVAIMTAKRGSGKSYLTKDILYRLHCEGFPRCCIFSGTEGANKFFSDFIPEVFVHSPLDLNTLTHIWNTQKEIILKQRCGHLDENEDTRILIVLDDCSFDKKTFTSQVIREMLCNGRHYKLTLIITLQYLLDLPPAMRSNVDFGFFFRDNIKTNRERLYRQFAGFYPDYRTFEAVFEACTANYECMCVDNTVSSTDHTDIVSYYKAEAVDFKFGPPSLWKFHDKLFISEEDEYILRQKMTLQSASKNSMTKVSGNSSITVVHE 285          
BLAST of jgi.p|Trimin1|161720 vs. uniprot
Match: A0A835Z4P3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4P3_9STRA)

HSP 1 Score: 233 bits (593), Expect = 3.010e-72
Identity = 115/249 (46.18%), Postives = 170/249 (68.27%), Query Frame = 1
Query:   37 RFDMSKLTKKHFTLVLTGKRGSGKSFLCKDIIFHLHEAKYPRCCIFSQTENANGFFSEFVPGIFIHSPFDLNVLANIIKQQKDLIMRQKLGQIPADQDTRLLLVLDDCAYDRRILASPVMREIMMNGRHYFISLIVTLQYLVDLAPSLRANVDVALFLKDNIRGNRERVWKHFAGFYENFHVFEAVFESCTANFECFCVDNTLSSTRHEDIVSYYKASDR-DFRFGHPSLWKFHDRVYLSEEDEFLMRQ 780
            +FDMS++++    + + GKRGSGKS L KDI++HLH A+ PRC  FS TE+AN FFS FVP +F+H+  + + L+N+ + QK+L M++ +GQ+P   DTRL ++LDDCA+D+ ++ S V++EI MNGRH+ +  IVTLQYL+DL  S+R+NVDV  FLK+    N+ER++    GF   F  F+ +F + T+N+E F V+    S+  + I+ YYKA    +FRFG  S+W+FH  VY S  D ++  Q
Sbjct:    7 KFDMSEVSRSPACVAICGKRGSGKSVLIKDILYHLHVARVPRCVCFSATEDANQFFSGFVPDVFVHA-LNHDTLSNMWQAQKELAMQKAVGQLPPGTDTRLAIILDDCAFDKTVMKSAVLKEIFMNGRHHGVFFIVTLQYLIDLNVSMRSNVDVFFFLKELNLKNQERIYHESCGFLPCFGAFQDLFMASTSNYEAFVVNGRCKSSDAQQIIHYYKADPTLNFRFGPASIWRFHSTVYESATDRYVRMQ 254          
BLAST of jgi.p|Trimin1|161720 vs. uniprot
Match: A0A835YWY0_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWY0_9STRA)

HSP 1 Score: 225 bits (574), Expect = 1.840e-69
Identity = 111/274 (40.51%), Postives = 177/274 (64.60%), Query Frame = 1
Query:   37 RFDMSKLTKKHFTLVLTGKRGSGKSFLCKDIIFHLHEAKYPRCCIFSQTENANGFFSEFVPGIFIHSPFDLNVLANIIKQQKDLIMRQKLGQIPADQDTRLLLVLDDCAYDRRILASPVMREIMMNGRHYFISLIVTLQYLVDLAPSLRANVDVALFLKDNIRGNRERVWKHFAGFYENFHVFEAVFESCTANFECFCVDNTLSSTRHEDIVSYYKA-SDRDFRFGHPSLWKFHDRVYLSEEDEFLMRQQMAVQQAVQQSVTKVTSSGVITVVR 855
            +FD  ++T+    + + GKRG+GKS L KD+++HL+ A  PRC  FS TE AN +F  F+P +F+H P D + L  + K QK+L++++++GQ+  D DTRL+LV+DDCAY ++++ S  +REI MNGRH+ I  IVTLQYL+DL  ++R+NVD   +LK+    N+ER++    GF  +F  F+ +F + TAN+E F V++   S   + IV++Y+A ++ +F++G P+LW++HD VY S  D++   Q+           T+    G   +VR
Sbjct:    7 KFDPKEMTRSPACVAIVGKRGTGKSMLIKDLLYHLNLAGVPRCICFSATEEANSYFGTFLPSVFVH-PLDPDTLDRVWKAQKELVLQKRVGQLNPDTDTRLVLVMDDCAYHKQMMKSATLREIFMNGRHHGIYFIVTLQYLIDLNVAMRSNVDCWFYLKELSHKNQERIYNESCGFLPSFLTFQDLFMASTANYEAFVVNSRCKSNDPQKIVAHYRADANLNFKYGAPALWRYHDEVYESASDKYQRLQRTQQDSRPMSEATRSRKGGNTIIVR 279          
BLAST of jgi.p|Trimin1|161720 vs. uniprot
Match: B5LWH6_9PHYC (Putative VV A32 ATPase n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWH6_9PHYC)

HSP 1 Score: 205 bits (522), Expect = 1.680e-61
Identity = 99/236 (41.95%), Postives = 152/236 (64.41%), Query Frame = 1
Query:   70 FTLVLTGKRGSGKSFLCKDIIFHLHEAKYPRCCIFSQTENANGFFSEFVPGIFIHSPFDL-NVLANIIKQQKDLIMRQKLGQIPADQDTRLLLVLDDCAYDRRILASPVMREIMMNGRHYFISLIVTLQYLVDLAPSLRANVDVALFLKDNIRGNRERVWKHFAGFYENFHVFEAVFESCTANFECFCVDNTLSSTRHEDIVSYYKAS-DRDFRFGHPSLWKFHDRVYLSEEDEFL 771
            F  V+ GK+ +GKS L KDI++HLH+ K PR C+FS TE +NGF+ EFVPG+FI+   D+ N L  I+  QK+  M+++LG+   D D+R+ +VLDD  Y + IL S ++R+I MNGRH+ I L+V  QY +D+   LR N D    LK N   + + + + + G +E    F+ V E+CT +++C  +DNT  ST   D+  ++KA   R+F+FG   LW++HDR +++E+  +L
Sbjct:   32 FNAVVIGKKHTGKSTLIKDILYHLHKKKVPRMCVFSGTEESNGFYKEFVPGLFIYDDSDVENKLNEIVDSQKETAMQKQLGEASEDLDSRIAIVLDDVGYKKNILKSEIIRQIFMNGRHHQIYLVVACQYCMDVGQDLRTNADYVYVLKQNNMSSIKNLHETYFGTFEKKKDFQTVLEACTQDYQCLVLDNTKPSTMTTDVCFWFKAKYSRNFKFGCSQLWEYHDRWFMTEKQRYL 267          
BLAST of jgi.p|Trimin1|161720 vs. uniprot
Match: A0A836CRE2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CRE2_9STRA)

HSP 1 Score: 203 bits (517), Expect = 3.740e-61
Identity = 104/253 (41.11%), Postives = 161/253 (63.64%), Query Frame = 1
Query:   37 RFDMSKLTKKHFTLVLTGKRGSGKSFLCKDIIFHLHEAKYPRCCIFSQTENANGFFSEFVPGIFIHSPFDLNVLANIIKQQKDLIMRQKLGQIPADQDTRLLLVLDDCAYDRRILASPVMREIMMNGRHYFISLIVTLQYLVDLAPSLRANVDVALFLKDNIRGNRERVWKHFAGFYENFHVFEAVFESCTANFECFCVDNTLSSTRHEDIVSYYKA-SDRDFRFGHPSLWKFHDRVYLSEEDEFLMRQQMAV 792
            RFD  +++K+   + + G RG+GKS L KDI++H++EA  PRC +FS TE AN +FSEFVPG+F+H P D + L ++ ++QK+L++++  G +PA  +T L+LVLDDCA++R+                          YL+DL  ++R+NVD+  FLK+  R NRE+++K   GF  N+HVFE +F   TA++E F V++  +S+  EDIV +YKA +   +R+G P LW++H  VY S +  +  RQQ A+
Sbjct:    7 RFDPREISKRPVCIAIVGMRGTGKSVLLKDILYHINEAGAPRCVVFSGTEGANSYFSEFVPGVFVH-PMDQDTLHSVWERQKELVLKKAAGGLPASTNTSLVLVLDDCAFNRK--------------------------YLIDLNVAMRSNVDIYFFLKELNRMNREKIYKETCGFLPNYHVFEQLFNDATADYETFVVNSRCTSSNPEDIVHHYKADAGLQYRYGPPCLWRYHHSVYESPQQRY-QRQQEAL 231          
BLAST of jgi.p|Trimin1|161720 vs. uniprot
Match: Q6XM75_9PHYC (FirrV-1-A12 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM75_9PHYC)

HSP 1 Score: 202 bits (514), Expect = 3.580e-60
Identity = 103/257 (40.08%), Postives = 161/257 (62.65%), Query Frame = 1
Query:   25 ISVKRFDMSKLTKKHFTLVLTGKRGSGKSFLCKDIIFHLHEAKYPRCCIFSQTENANGFFSEFVPGIFIHSPFDLNV----LANIIKQQKDLIMRQKLGQIPADQDTRLLLVLDDCAYDRRILASPVMREIMMNGRHYFISLIVTLQYLVDLAPSLRANVDVALFLKDNIRGNRERVWKHFAGFYENFHVFEAVFESCTANFECFCVDNTLSSTRHEDIVSYYKAS-DRDFRFGHPSLWKFHDRVYLSEEDEFLMRQ 780
            I +  F+      KHF  V+ GK+ +GKS L KDI++++H+ K PR C+FS TE +NGF+ EF+P +FI   FD ++    L  I++ QK + M+++LG+   D D+R+++VLDD  Y +  L   ++R+I MNGRH+ ISLIV  QY +DLA  LR N D    LK N   + + + + + G +E    F+ V E+CTA+++C  +DNT  ST   D+  +YKA   ++++FG P LW++H R Y+SE+  +  +Q
Sbjct:    6 IKLSAFNAKAACSKHFNAVVIGKKHTGKSTLIKDILYNVHKQKVPRICVFSGTEESNGFYREFIPDLFI---FDDSMVEEKLTQIVESQKKIGMQKQLGECGDDVDSRIVVVLDDVGYKKNTLKCEILRQIFMNGRHHQISLIVACQYCMDLAIDLRTNADYVFVLKQNNMNSIKNLHETYFGSFEKKKDFQTVLEACTADYQCLVLDNTKPSTNTTDVCFWYKAKYGKEYKFGCPLLWEYHGRWYMSEKQRYQSQQ 259          
BLAST of jgi.p|Trimin1|161720 vs. uniprot
Match: A0A6C0JD13_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0JD13_9ZZZZ)

HSP 1 Score: 198 bits (504), Expect = 4.180e-59
Identity = 97/250 (38.80%), Postives = 153/250 (61.20%), Query Frame = 1
Query:   25 ISVKRFDMSKLTKKHFTLVLTGKRGSGKSFLCKDIIFHLHEAKYPRCCIFSQTENANGFFSEFVPGIFIHSPFDLNVLANIIKQQKDLIMRQKLGQIPADQDTRLLLVLDDCAYDRRILASPVMREIMMNGRHYFISLIVTLQYLVDLAPSLRANVDVALFLKDNIRGNRERVWKHFAGFYENFHVFEAVFESCTANFECFCVDNTLSSTRHEDIVSYYKA-SDRDFRFGHPSLWKFHDRVY--LSEEDE 765
            I +K+FDMS +   H  +V+ GKRG+GKS+L KD +FH ++   P   + S TE  N +FS F+P IFIH  + ++++ N++K+Q D+I +   G+   D D R  L+ DDC YD +      MR I MNGRH+ ++ ++T+Q+ + + P LR N+D    L++NI  NR R+++H+AG + +F +F  + + CT NFEC  + N   S + ED V +YKA S  DF+ G    WK+++  Y    E+D+
Sbjct:    3 IKLKKFDMSTIAD-HQVIVMIGKRGTGKSYLLKDFLFHKNDI--PVGTVVSPTEKMNKYFSHFIPPIFIHDEYSVDLVRNVLKRQGDIIKKINNGEYGDDVDPRAFLIFDDCLYDDKWTKDKNMRAIFMNGRHFKLTFLLTMQFPLGIKPHLRTNIDYTFILRENIVSNRRRIYEHYAGMFPSFDIFCRIMDQCTENFECLVIHNNSKSNKIEDQVFWYKAESHEDFKLGSDEFWKYNNENYDDTGEQDD 249          
BLAST of jgi.p|Trimin1|161720 vs. uniprot
Match: A0A6C0F6X2_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0F6X2_9ZZZZ)

HSP 1 Score: 194 bits (494), Expect = 1.290e-57
Identity = 97/246 (39.43%), Postives = 153/246 (62.20%), Query Frame = 1
Query:   25 ISVKRFDMSKLTKKHFTLVLTGKRGSGKSFLCKDIIFHLHEAKYPRCCIFSQTENANGFFSEFVPGIFIHSPFDLNVLANIIKQQKDLIMRQKLGQIPADQDTRLLLVLDDCAYDRRILASPVMREIMMNGRHYFISLIVTLQYLVDLAPSLRANVDVALFLKDNIRGNRERVWKHFAGFYENFHVFEAVFESCTANFECFCVDNTLSSTRHEDIVSYYKASDR-DFRFGHPSLWKFHDRVYLSEE 759
            + +K+F+++++ K    +VL GKR +GKSFLC+DI++H H+   P   + S TE AN F+ + VP +FIH  F  ++++N++ +QK +I +   G   A  D R  L+LDDC YD        MR + MNGRHY +  ++T+QY + + P+LR N+D    L++N   NR+R+++H+AG + NF +F  V + CT N+EC  ++N   S + ED V +YKA  R DF+ G PS WKF    + +E+
Sbjct:    5 LELKKFNINEI-KDDKVVVLIGKRDTGKSFLCRDILYH-HQ-NIPVGQVISGTEGANQFYQKIVPKLFIHDEFKPDIVSNMLARQKMMIEKMNGGGSDASIDPRAFLILDDCLYDNTWSKDKNMRSVFMNGRHYKLLFLLTMQYALGIPPNLRTNIDYVFILRENYVSNRKRLYEHYAGMFPNFEMFCQVMDQCTENYECLVINNNAKSNKLEDQVFWYKAEPRPDFKIGAPSFWKFSQENFTNEK 247          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|161720 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z5I5_9STRA2.380e-206100.00Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A836CN20_9STRA4.100e-17181.05Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z4N1_9STRA3.330e-12358.30Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z4P3_9STRA3.010e-7246.18Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YWY0_9STRA1.840e-6940.51Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
B5LWH6_9PHYC1.680e-6141.95Putative VV A32 ATPase n=1 Tax=Feldmannia species ... [more]
A0A836CRE2_9STRA3.740e-6141.11Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
Q6XM75_9PHYC3.580e-6040.08FirrV-1-A12 n=1 Tax=Feldmannia irregularis virus a... [more]
A0A6C0JD13_9ZZZZ4.180e-5938.80Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A6C0F6X2_9ZZZZ1.290e-5739.43Uncharacterized protein n=1 Tax=viral metagenome T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_18contigContig_18:911066..911926 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|161720|e_gw1.18.340.1
Descriptionadenyl ribonucleotide binding
COG categoryS
Max annot lvl10239|Viruses
EggNOG OGs4QASH@10239|Viruses,4QVRB@35237|dsDNA viruses no RNA stage
Evalue8.31e-58
Seed ortholog654926.Q8QNN5_ESV1K
Hectar predicted targeting categoryother localisation
TranscriptId162042
TrackFilteredModels1
ProteinId161720
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161720gene_1386Tribonema minus UTEX_B_3156 geneContig_18 911066..911926 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1386_1exon_1386_1Tribonema minus UTEX_B_3156 exonContig_18 911066..911926 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1386CDS_1386Tribonema minus UTEX_B_3156 CDSContig_18 911066..911926 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161720Trimin1|161720|e_gw1.18.340.1Tribonema minus UTEX_B_3156 polypeptideContig_18 911066..911926 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1386 ID=mRNA_1386|Name=jgi.p|Trimin1|161720|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=861bp|location=Sequence derived from alignment at Contig_18:911066..911926+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGACGCACCAACGAATCGCATCTCTGTAAAGAGATTTGACATGTC
GAAACTCACAAAGAAGCATTTCACGCTTGTTCTGACAGGTAAGCGGGGCA
GTGGCAAATCTTTCCTCTGTAAGGACATCATTTTTCACCTGCACGAGGCC
AAATATCCTCGATGCTGCATTTTCTCACAAACGGAAAATGCAAATGGATT
TTTCAGCGAGTTTGTGCCCGGCATATTCATTCATAGCCCTTTCGATTTGA
ACGTGCTCGCAAACATCATCAAGCAGCAGAAAGATTTGATCATGAGGCAA
AAACTTGGACAGATTCCAGCCGATCAAGACACCAGGCTACTTCTAGTGCT
GGACGATTGTGCTTATGACCGTCGCATCTTGGCGTCGCCTGTCATGCGTG
AGATCATGATGAACGGCCGACACTATTTCATAAGCCTGATTGTGACCTTG
CAATACTTGGTAGACCTGGCGCCATCGCTGCGTGCAAATGTGGATGTGGC
GCTTTTCCTCAAGGATAACATCAGAGGCAATCGAGAAAGGGTCTGGAAAC
ATTTTGCTGGCTTTTATGAAAATTTTCATGTGTTTGAAGCCGTCTTTGAG
TCGTGTACAGCCAATTTCGAATGCTTCTGCGTGGACAACACACTCTCAAG
CACGAGACATGAAGACATTGTTTCTTACTACAAAGCGTCAGACCGAGACT
TTAGGTTTGGCCATCCAAGTTTATGGAAGTTTCATGACAGAGTGTACCTT
TCTGAGGAAGATGAGTTTCTGATGCGCCAGCAAATGGCTGTCCAACAGGC
TGTACAGCAGAGCGTCACCAAGGTCACCAGTAGCGGGGTCATCACTGTCG
TGCGCGAGTGA
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protein sequence of jgi.p|Trimin1|161720

>Trimin1|161720|e_gw1.18.340.1 ID=Trimin1|161720|e_gw1.18.340.1|Name=jgi.p|Trimin1|161720|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=287bp
MADAPTNRISVKRFDMSKLTKKHFTLVLTGKRGSGKSFLCKDIIFHLHEA
KYPRCCIFSQTENANGFFSEFVPGIFIHSPFDLNVLANIIKQQKDLIMRQ
KLGQIPADQDTRLLLVLDDCAYDRRILASPVMREIMMNGRHYFISLIVTL
QYLVDLAPSLRANVDVALFLKDNIRGNRERVWKHFAGFYENFHVFEAVFE
SCTANFECFCVDNTLSSTRHEDIVSYYKASDRDFRFGHPSLWKFHDRVYL
SEEDEFLMRQQMAVQQAVQQSVTKVTSSGVITVVRE*
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mRNA from alignment at Contig_18:911066..911926+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1386 ID=mRNA_1386|Name=jgi.p|Trimin1|161720|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=861bp|location=Sequence derived from alignment at Contig_18:911066..911926+ (Tribonema minus UTEX_B_3156 )
ATGGCCGACGCACCAACGAATCGCATCTCTGTAAAGAGATTTGACATGTC GAAACTCACAAAGAAGCATTTCACGCTTGTTCTGACAGGTAAGCGGGGCA GTGGCAAATCTTTCCTCTGTAAGGACATCATTTTTCACCTGCACGAGGCC AAATATCCTCGATGCTGCATTTTCTCACAAACGGAAAATGCAAATGGATT TTTCAGCGAGTTTGTGCCCGGCATATTCATTCATAGCCCTTTCGATTTGA ACGTGCTCGCAAACATCATCAAGCAGCAGAAAGATTTGATCATGAGGCAA AAACTTGGACAGATTCCAGCCGATCAAGACACCAGGCTACTTCTAGTGCT GGACGATTGTGCTTATGACCGTCGCATCTTGGCGTCGCCTGTCATGCGTG AGATCATGATGAACGGCCGACACTATTTCATAAGCCTGATTGTGACCTTG CAATACTTGGTAGACCTGGCGCCATCGCTGCGTGCAAATGTGGATGTGGC GCTTTTCCTCAAGGATAACATCAGAGGCAATCGAGAAAGGGTCTGGAAAC ATTTTGCTGGCTTTTATGAAAATTTTCATGTGTTTGAAGCCGTCTTTGAG TCGTGTACAGCCAATTTCGAATGCTTCTGCGTGGACAACACACTCTCAAG CACGAGACATGAAGACATTGTTTCTTACTACAAAGCGTCAGACCGAGACT TTAGGTTTGGCCATCCAAGTTTATGGAAGTTTCATGACAGAGTGTACCTT TCTGAGGAAGATGAGTTTCTGATGCGCCAGCAAATGGCTGTCCAACAGGC TGTACAGCAGAGCGTCACCAAGGTCACCAGTAGCGGGGTCATCACTGTCG TGCGCGAGTGA
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Coding sequence (CDS) from alignment at Contig_18:911066..911926+

>mRNA_1386 ID=mRNA_1386|Name=jgi.p|Trimin1|161720|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=861bp|location=Sequence derived from alignment at Contig_18:911066..911926+ (Tribonema minus UTEX_B_3156 )
ATGGCCGACGCACCAACGAATCGCATCTCTGTAAAGAGATTTGACATGTC
GAAACTCACAAAGAAGCATTTCACGCTTGTTCTGACAGGTAAGCGGGGCA
GTGGCAAATCTTTCCTCTGTAAGGACATCATTTTTCACCTGCACGAGGCC
AAATATCCTCGATGCTGCATTTTCTCACAAACGGAAAATGCAAATGGATT
TTTCAGCGAGTTTGTGCCCGGCATATTCATTCATAGCCCTTTCGATTTGA
ACGTGCTCGCAAACATCATCAAGCAGCAGAAAGATTTGATCATGAGGCAA
AAACTTGGACAGATTCCAGCCGATCAAGACACCAGGCTACTTCTAGTGCT
GGACGATTGTGCTTATGACCGTCGCATCTTGGCGTCGCCTGTCATGCGTG
AGATCATGATGAACGGCCGACACTATTTCATAAGCCTGATTGTGACCTTG
CAATACTTGGTAGACCTGGCGCCATCGCTGCGTGCAAATGTGGATGTGGC
GCTTTTCCTCAAGGATAACATCAGAGGCAATCGAGAAAGGGTCTGGAAAC
ATTTTGCTGGCTTTTATGAAAATTTTCATGTGTTTGAAGCCGTCTTTGAG
TCGTGTACAGCCAATTTCGAATGCTTCTGCGTGGACAACACACTCTCAAG
CACGAGACATGAAGACATTGTTTCTTACTACAAAGCGTCAGACCGAGACT
TTAGGTTTGGCCATCCAAGTTTATGGAAGTTTCATGACAGAGTGTACCTT
TCTGAGGAAGATGAGTTTCTGATGCGCCAGCAAATGGCTGTCCAACAGGC
TGTACAGCAGAGCGTCACCAAGGTCACCAGTAGCGGGGTCATCACTGTCG
TGCGCGAGTGA
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