mRNA_13833 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|352953
Unique NamemRNA_13833
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|352953 vs. uniprot
Match: A0A835Z9Y9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9Y9_9STRA)

HSP 1 Score: 852 bits (2202), Expect = 1.160e-309
Identity = 495/495 (100.00%), Postives = 495/495 (100.00%), Query Frame = 1 
Query:    1 MASAYDARAAGYDPTAWARERQERIHKAAQRPRPSWNNDFVDSNALAPEADSSGRRHGTDTVIGRRRDSGGTSSRHAAGASGDGGANLAGGDAEPWRHRHTTTPKLPWDDGPAPPAPAADADARSGSAENGYHRADARRAHTCAANSAQEWGDGAAAGWEGGGAMLGTHSXXXXXXXXXXXXXPELLMLLKQKMNSRKGPRKLSGSLPSRSKXXXXXXXXXXXDMGQPQEYADVQLQQCPDCGRRFNEKAFGKHVSVCRQVFLQKRKAFDAAKMRVAGTEMAEFTAKTPSGRGSAXXXXXXXXXXXXXXXXXTGDDQPVAGNGGAKSAKWRQQSAAFREAIRSARMVTQAQAKGIPLARLPAAAAAAPDPSLVPCPHCARRFNEAAAERHIPRCSSIRAQPSRLAKGSGRGLGVASRKPSGPGRRFVNDLGTAQFTGKQKKEHEAAKIVALGGQAPKAQKMPYKILMGMRNKAKEREAKRLQAEKESGAAARMAS 1485
            MASAYDARAAGYDPTAWARERQERIHKAAQRPRPSWNNDFVDSNALAPEADSSGRRHGTDTVIGRRRDSGGTSSRHAAGASGDGGANLAGGDAEPWRHRHTTTPKLPWDDGPAPPAPAADADARSGSAENGYHRADARRAHTCAANSAQEWGDGAAAGWEGGGAMLGTHSXXXXXXXXXXXXXPELLMLLKQKMNSRKGPRKLSGSLPSRSKXXXXXXXXXXXDMGQPQEYADVQLQQCPDCGRRFNEKAFGKHVSVCRQVFLQKRKAFDAAKMRVAGTEMAEFTAKTPSGRGSAXXXXXXXXXXXXXXXXXTGDDQPVAGNGGAKSAKWRQQSAAFREAIRSARMVTQAQAKGIPLARLPAAAAAAPDPSLVPCPHCARRFNEAAAERHIPRCSSIRAQPSRLAKGSGRGLGVASRKPSGPGRRFVNDLGTAQFTGKQKKEHEAAKIVALGGQAPKAQKMPYKILMGMRNKAKEREAKRLQAEKESGAAARMAS
Sbjct:    1 MASAYDARAAGYDPTAWARERQERIHKAAQRPRPSWNNDFVDSNALAPEADSSGRRHGTDTVIGRRRDSGGTSSRHAAGASGDGGANLAGGDAEPWRHRHTTTPKLPWDDGPAPPAPAADADARSGSAENGYHRADARRAHTCAANSAQEWGDGAAAGWEGGGAMLGTHSXXXXXXXXXXXXXPELLMLLKQKMNSRKGPRKLSGSLPSRSKXXXXXXXXXXXDMGQPQEYADVQLQQCPDCGRRFNEKAFGKHVSVCRQVFLQKRKAFDAAKMRVAGTEMAEFTAKTPSGRGSAXXXXXXXXXXXXXXXXXTGDDQPVAGNGGAKSAKWRQQSAAFREAIRSARMVTQAQAKGIPLARLPAAAAAAPDPSLVPCPHCARRFNEAAAERHIPRCSSIRAQPSRLAKGSGRGLGVASRKPSGPGRRFVNDLGTAQFTGKQKKEHEAAKIVALGGQAPKAQKMPYKILMGMRNKAKEREAKRLQAEKESGAAARMAS 495
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BLAST of jgi.p|Trimin1|352953 vs. uniprot
Match: A0A7S4DGN0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DGN0_HETAK)

HSP 1 Score: 150 bits (380), Expect = 9.300e-39
Identity = 101/187 (54.01%), Postives = 132/187 (70.59%), Query Frame = 1 
Query:  697 DVQLQQCP-DCGRRFNEKAFGKHVSVCRQVFLQKRKAFDAAKMRVAGTEMAEFTAKTPSGRGSAXXXXXXXXXXXXXXXXXTGDDQPVAGNGGAKSAKWRQQSAAFREAIRSARMVTQAQAKGIPLARLPAAAAAAPDPSLVPCPHCARRFNEAAAERHIPRCSSIRAQPSRLAKGSGRGLGVASRK 1254
            D  L +C   CGR+FNEKA  KH  VCR+VF++KR+AFD  + R+ G E A+  AKT     + XXXXXXXXXXXXXXXX   +DQPV GNG  K++KW+ QS   REA++  R++ + + +G  LA LP  A +APDPSLVPCP C RRFN+ AA+RHIP+C++IR +P  L +G+  GLG A+RK
Sbjct:   28 DTTLYECGVGCGRKFNEKALAKHEKVCRKVFVEKRRAFDTQQQRITGEEHAKALAKTKQEEAARXXXXXXXXXXXXXXXXANPEDQPV-GNG--KASKWKAQSDQLREAMKQQRLIARYEKEGKSLADLPQMAPSAPDPSLVPCPTCGRRFNQQAADRHIPKCATIRNKPKTLQRGARVGLGAAARK 211
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BLAST of jgi.p|Trimin1|352953 vs. uniprot
Match: D8LNR2_ECTSI (Zinc finger, C2H2 type family protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNR2_ECTSI)

HSP 1 Score: 158 bits (400), Expect = 1.310e-37
Identity = 104/197 (52.79%), Postives = 126/197 (63.96%), Query Frame = 1 
Query:  700 VQLQQCPDCGRRFNEKAFGKHVSVCRQVFLQKRKAFDAAKMRVAGTEMAEFTAKTPSGRGSAXXXXXXXXXXXXXXXXXTGDDQPVAGNG--GAKSAKWRQQSAAFREAIRSARMVTQAQAKGIPLARLPAAAAAAPDPSLVPCPHCARRFNEAAAERHIPRCSSIRAQPSRLAKGSGRGLGVASRKP----SGPGR 1272
            V+L++C  CGRRF   A  KH   C +VF  KRK FD A+MR+ GTE+ +F  +    +G A     XXXXXXXXX     DD PV G    GA+S+KWRQQS  FR+A+R AR+V  AQ  G  LA LP    +APDPSL+PCPHC RRF+E A ERH+  C +IRA+PS L KGSG  LG A+RK     SG GR
Sbjct:  867 VELEECRTCGRRFTPAALEKHSRACHKVFQAKRKVFDTAEMRLKGTELEKFAKE----KGRAGGRGGXXXXXXXXXPPRGFDDTPVGGAAARGARSSKWRQQSKQFRDALRQARVVADAQKSGKSLADLPPPKPSAPDPSLIPCPHCGRRFSELAGERHMQHCKNIRAKPSVLKKGSGSLLGQAARKTASGASGKGR 1059
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BLAST of jgi.p|Trimin1|352953 vs. uniprot
Match: A0A812UVN6_SYMMI (ZC2HC1A protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812UVN6_SYMMI)

HSP 1 Score: 128 bits (322), Expect = 1.050e-30
Identity = 103/202 (50.99%), Postives = 125/202 (61.88%), Query Frame = 1 
Query:  712 QCPDCGRRFNEKAFGKHVSVCRQVFLQKRKAFDAAKMRVAGT-------EMAEFTAKTPSGRGSAXXXXXXXXXXXXXXXXXTGDDQPVAGNGGAKSAKWRQQSAAFREAIRSARMVTQAQAKGIPLARLPAAAAAAPDPSLVPCPHCARRFNEAAAERHIPRCSSIRAQPSRLAKGSG-----RGLGV---ASRKPSGPGR 1272
            +CPDCGR+FN   + KHV +C +VFLQK KAFD+ KMR+A         + A  + K        XXXXXXXXXXXXXXXXX          GG    KW++QS  FREA+R ARMV +A+  G P+   P  A +APDPSLVPCP+C R FNE AAERHIP+C +IRAQP  L +GSG      G G    A ++ SG GR
Sbjct:   20 ECPDCGRKFNPIPYEKHVKICAKVFLQKSKAFDSKKMRIADNPELLKIQQAALRSEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGG----KWKEQSNQFREAMRMARMVAKAEKTGGPM---PEMAPSAPDPSLVPCPNCGRTFNERAAERHIPQCKNIRAQPKSLKRGSGGAGGRAGTGAVNKAKQQTSGAGR 214
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BLAST of jgi.p|Trimin1|352953 vs. uniprot
Match: A0A7S3D924_9EUKA (Hypothetical protein n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3D924_9EUKA)

HSP 1 Score: 120 bits (300), Expect = 3.980e-26
Identity = 79/187 (42.25%), Postives = 109/187 (58.29%), Query Frame = 1 
Query:  694 ADVQLQQCPDCGRRFNEKAFGKHVSVCRQVFLQKRKAFDAAKMRVAGTEMAEFTAKTPSGR-GSAXXXXXXXXXXXXXXXXXTGDDQPVAGNGGAKSAKWRQQSAAFREAIRSARMVTQAQAKGIPLARLPAAAAAAPDPSLVPCPHCARRFNEAAAERHIPRCSSIRAQPSRLAKGSGRGLGVASR 1251
            A+  +  C  CGR+F E    KH++ C +   +KRKAFD +KMR  GT++ ++  + P G  G  XXXXXX            GDD+ +      K AKW++Q  AF   I++AR  TQA  +G P + +P   +   D  LV CPHC R+FNEAAAERHIPRC  I+A+P+ L +G+G+G G   R
Sbjct:  201 AEGPMVPCHICGRKFFESRIDKHITACEKS-QKKRKAFDTSKMRADGTDIGQYKRENPGGGLGGXXXXXXXKKPGAAKGGKGGGDDRQLD-----KKAKWKRQHEAFMANIKAARAATQAIKEGKPASEIPVVPSMQDD--LVQCPHCNRKFNEAAAERHIPRCRDIKAKPTMLRRGTGKGAGQLKR 379
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BLAST of jgi.p|Trimin1|352953 vs. uniprot
Match: A0A5A8D635_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D635_CAFRO)

HSP 1 Score: 122 bits (307), Expect = 5.620e-26
Identity = 82/180 (45.56%), Postives = 107/180 (59.44%), Query Frame = 1 
Query:  712 QCPDCGRRFNEKAFGKHVSVCRQVFLQKRKAFDAAKMRVAGTEMAEFTAKTPSGRGSAXXXXXXXXXXXXXXXXXTGDDQPVAGNGGAKSAK------WRQQSAAFREAIRSARMVTQAQAKGIPLARLPAAAAAAPDPSLVPCPHCARRFNEAAAERHIPRCSSIRAQPSRLAKGSGRG 1233
            +C  CGR+F   A  KH  VC +VF +KR+ FD+   R+    +A        G    XXXXXXXX          G     +  GGA +A       WRQ+S+  REA++++RM+T+AQ +G  L  LP   AAAPDPSLVPCPHC R FN  AAERHIP+C++ +A+PSRLA+G G G
Sbjct:  475 ECSTCGRKFRPDALEKHARVCLKVFQKKRRKFDSTSARMPPEALA---VGADGGXXXXXXXXXXXXGAPARGPRSRGGPPAGSAAGGADAAARAKREAWRQKSSQLREAMKASRMITKAQKEGKDLRDLPPMPAAAPDPSLVPCPHCGRTFNAVAAERHIPKCATTKAKPSRLARGGGVG 651
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BLAST of jgi.p|Trimin1|352953 vs. uniprot
Match: A0A5A8DGU2_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DGU2_CAFRO)

HSP 1 Score: 121 bits (303), Expect = 2.190e-25
Identity = 75/185 (40.54%), Postives = 100/185 (54.05%), Query Frame = 1 
Query:  679 QPQEYADVQLQQCPDCGRRFNEKAFGKHVSVCRQVFLQKRKAFDAAKMRVAGTEMAEFTAKTPSGRGSAXXXXXXXXXXXXXXXXXTGDDQPVAGNGGAKSAKWRQQSAAFREAIRSARMVTQAQAKGIPLARLPAAAAAAPDPSLVPCPHCARRFNEAAAERHIPRCSSIRAQPSRLAKGSGRG 1233
            +P E  D    +C  CGR+F   A  KH  VC +VF +KR+ FD+ +               P+G  +                   G D        AK   WRQ+S+  REA++++RM+T+AQ +G  L  LP   AAAPDPSLVPCPHC R FN  AAERHIP+C++ +A+PSRLA+G G G
Sbjct:  575 EPDEEDDGVRVECSTCGRKFRPDALEKHARVCLKVFQKKRRKFDSTR------------GGPPAGSAAG------------------GADAAAR----AKREAWRQKSSQLREAMKASRMITKAQKEGKDLRDLPPMPAAAPDPSLVPCPHCGRTFNAVAAERHIPKCATTKAKPSRLARGGGVG 725
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BLAST of jgi.p|Trimin1|352953 vs. uniprot
Match: A0A7S3G5B9_9EUKA (Hypothetical protein n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3G5B9_9EUKA)

HSP 1 Score: 120 bits (300), Expect = 2.830e-25
Identity = 79/187 (42.25%), Postives = 109/187 (58.29%), Query Frame = 1 
Query:  694 ADVQLQQCPDCGRRFNEKAFGKHVSVCRQVFLQKRKAFDAAKMRVAGTEMAEFTAKTPSGR-GSAXXXXXXXXXXXXXXXXXTGDDQPVAGNGGAKSAKWRQQSAAFREAIRSARMVTQAQAKGIPLARLPAAAAAAPDPSLVPCPHCARRFNEAAAERHIPRCSSIRAQPSRLAKGSGRGLGVASR 1251
            A+  +  C  CGR+F E    KH++ C +   +KRKAFD +KMR  GT++ ++  + P G  G  XXXXXX            GDD+ +      K AKW++Q  AF   I++AR  TQA  +G P + +P   +   D  LV CPHC R+FNEAAAERHIPRC  I+A+P+ L +G+G+G G   R
Sbjct:  383 AEGPMVPCHICGRKFFESRIDKHITACEKS-QKKRKAFDTSKMRADGTDIGQYKRENPGGGLGGXXXXXXXKKPGAAKGGKGGGDDRQLD-----KKAKWKRQHEAFMANIKAARAATQAIKEGKPASEIPVVPSMQDD--LVQCPHCNRKFNEAAAERHIPRCRDIKAKPTMLRRGTGKGAGQLKR 561
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BLAST of jgi.p|Trimin1|352953 vs. uniprot
Match: A0A699Z5H0_HAELA (Uncharacterized protein n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A699Z5H0_HAELA)

HSP 1 Score: 111 bits (277), Expect = 5.190e-25
Identity = 66/166 (39.76%), Postives = 90/166 (54.22%), Query Frame = 1 
Query:  706 LQQCPDCGRRFNEKAFGKHVSVCRQVFLQKRKAFDAAKMRVAGTEMAEFTAKTPSGRGSAXXXXXXXXXXXXXXXXXTGDDQPVAGNGGAKSAKWRQQSAAFREAIRSARMVTQAQAKGIPLARLPAAAAAAPDPSLVPCPHCARRFNEAAAERHIPRCSSIRAQP 1203
            + QC  CGR FN+ A+GKH  VC +VF++KRKAF+ A+ RVAGTE A+F                             G     A   G K +KW+ QS   R+A+R+ RM+ +A+ +G  +  L   AAA      VPCPHC R+F +  AERHIP C +I+A+P
Sbjct:    1 MVQCHTCGRTFNQLAYGKHAKVCEKVFVKKRKAFNVAEARVAGTEAAKF--------------FDVKKGVPKSELQRPGSGPARAA--GQKMSKWKMQSEQLRQAMRANRMIAEAKERGQDIRTLKFEAAAEELDDRVPCPHCGRKFAQLTAERHIPACKNIKAKP 150
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BLAST of jgi.p|Trimin1|352953 vs. uniprot
Match: A0A5J4XE72_9CHLO (Uncharacterized protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XE72_9CHLO)

HSP 1 Score: 116 bits (291), Expect = 5.140e-24
Identity = 81/190 (42.63%), Postives = 96/190 (50.53%), Query Frame = 1 
Query:  706 LQQCPDCGRRFNEKAFGKHVSVCRQVFLQKRKAFDAAKMRVAGTEMAEF-------TAKTPSGRGSAXXXXXXXXXXXXXXXXXTGD-----DQPVAGNGGAKSAKWRQQSAAFREAIRSARMVTQAQAKGIPLARLPAAA----AAAPDPSLVPCPHCARRFNEAAAERHIPRCSSIRAQPSRLAKGSG 1227
            L QC  CGR FN KAF  H  +C +VF  KRKAF+ A+ RVA T    F             G GS+                  G      D+PV G GG   AKWR QS   R        +  A +KG P A + A      A+APDPSL+ CPHC RRFNE AAERHIP+C  I+A+PSRL  G+G
Sbjct:  413 LTQCEGCGRSFNPKAFEVHSRICAKVFQTKRKAFNVAEARVADTGAEHFYDARRGAPKAEAGGIGSSKPGRKPARGGLARGGSGVGASPSHADKPV-GVGGKSGAKWRNQSEQLR--------IAMAASKGGPQAAVTAFGGAPIASAPDPSLILCPHCGRRFNETAAERHIPKCQDIKAKPSRLLAGAG 593
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352953 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z9Y9_9STRA1.160e-309100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4DGN0_HETAK9.300e-3954.01Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
D8LNR2_ECTSI1.310e-3752.79Zinc finger, C2H2 type family protein n=2 Tax=Ecto... [more]
A0A812UVN6_SYMMI1.050e-3050.99ZC2HC1A protein n=1 Tax=Symbiodinium microadriatic... [more]
A0A7S3D924_9EUKA3.980e-2642.25Hypothetical protein n=1 Tax=Palpitomonas bilix Ta... [more]
A0A5A8D635_CAFRO5.620e-2645.56Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A5A8DGU2_CAFRO2.190e-2540.54Uncharacterized protein n=2 Tax=Cafeteria roenberg... [more]
A0A7S3G5B9_9EUKA2.830e-2542.25Hypothetical protein n=1 Tax=Palpitomonas bilix Ta... [more]
A0A699Z5H0_HAELA5.190e-2539.76Uncharacterized protein n=1 Tax=Haematococcus lacu... [more]
A0A5J4XE72_9CHLO5.140e-2442.63Uncharacterized protein n=1 Tax=Trebouxia sp. A1-2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_137contigContig_137:378767..385761 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|352953|estExt_Genemark1.C_Ctg_1370050
Preferred nameZC2HC1A
Descriptionzinc-finger of a C2HC-type
COG categoryF
Max annot lvl2759|Eukaryota
EggNOG OGsKOG3940@1|root,KOG3940@2759|Eukaryota
Evalue1.36e-38
Seed ortholog2880.D8LNR2
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionC2H2 zinc finger protein
Ec32 orthologEc-08_006160.1
TranscriptId353275
TrackFilteredModels1
ProteinId352953
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352953gene_13833Tribonema minus UTEX_B_3156 geneContig_137 378767..385761 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352953Trimin1|352953|estExt_Genemark1.C_Ctg_1370050Tribonema minus UTEX_B_3156 polypeptideContig_137 378767..385686 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13833_1exon_13833_1Tribonema minus UTEX_B_3156 exonContig_137 378767..378856 +
exon_13833_2exon_13833_2Tribonema minus UTEX_B_3156 exonContig_137 380003..380106 +
exon_13833_3exon_13833_3Tribonema minus UTEX_B_3156 exonContig_137 380410..380890 +
exon_13833_4exon_13833_4Tribonema minus UTEX_B_3156 exonContig_137 383105..383248 +
exon_13833_5exon_13833_5Tribonema minus UTEX_B_3156 exonContig_137 383841..384298 +
exon_13833_6exon_13833_6Tribonema minus UTEX_B_3156 exonContig_137 385355..385541 +
exon_13833_7exon_13833_7Tribonema minus UTEX_B_3156 exonContig_137 385663..385761 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13833CDS_13833Tribonema minus UTEX_B_3156 CDSContig_137 378767..378856 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_13833UTR3_13833Tribonema minus UTEX_B_3156 three_prime_UTRContig_137 385687..385761 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13833 ID=mRNA_13833|Name=jgi.p|Trimin1|352953|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1563bp|location=Sequence derived from alignment at Contig_137:378767..385761+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTCTGCATACGATGCGCGAGCAGCAGGCTATGATCCCACGGCGTG
GGCCAGGGAGAGGCAGGAGCGCATCCACAAGGCGGCTCAGAGGCCGCGGC
CCAGCTGGAACAACGACTTTGTTGACAGCAACGCGCTCGCACCGGAGGCG
GACAGCAGCGGCAGGCGGCATGGAACTGACACGGTCATCGGCAGACGGCG
AGACAGCGGCGGCACCAGCTCTCGGCATGCAGCGGGAGCATCCGGCGATG
GCGGCGCAAACTTGGCGGGCGGCGATGCTGAGCCGTGGCGACACAGGCAC
ACCACCACGCCAAAGCTGCCATGGGACGACGGCCCTGCGCCCCCTGCCCC
TGCCGCAGACGCCGACGCGCGCAGCGGTAGCGCAGAGAACGGGTACCACA
GGGCGGACGCGCGCAGGGCGCACACGTGCGCCGCCAACAGCGCTCAGGAG
TGGGGGGACGGCGCGGCGGCGGGGTGGGAGGGGGGGGGAGCGATGCTGGG
CACTCACAGCGGCGGCGGCGGCAGTGGCGGCGGTGGGGGTGGGTCGAGGC
CGGAGCTGCTGATGCTGCTGAAGCAGAAGATGAACAGCAGGAAGGGGCCG
CGCAAGCTCTCTGGGAGTTTGCCCAGCAGGAGCAAGAGCGCCACGCTGCC
GGCGCGCACGAGCTTTGCGGACATGGGACAGCCGCAGGAGTACGCAGACG
TGCAGCTGCAGCAGTGCCCAGACTGTGGGCGCAGGTTCAATGAGAAGGCC
TTTGGCAAGCACGTCAGCGTGTGCCGCCAGGTGTTTCTGCAGAAGCGCAA
GGCGTTTGACGCTGCGAAGATGCGCGTGGCGGGCACAGAAATGGCGGAGT
TCACAGCCAAAACCCCCAGCGGCCGCGGCAGCGCGGCAGCTGCAGCACGC
AGGGCAGCGTCCGCCGCCTCCGCGCGTGGCGGCGCCACCGGCGACGACCA
GCCAGTTGCTGGCAACGGCGGCGCCAAAAGCGCCAAGTGGCGGCAACAGT
CGGCGGCGTTCCGCGAGGCCATCCGCAGCGCGCGCATGGTCACGCAGGCG
CAGGCCAAGGGCATACCGCTCGCGCGCCTGCCGGCGGCGGCGGCGGCGGC
GCCGGACCCGTCGCTGGTGCCGTGCCCGCACTGCGCGCGCCGCTTCAATG
AGGCCGCCGCGGAGCGGCACATACCGAGGTGCAGCAGCATCCGCGCGCAG
CCGTCGCGGCTGGCCAAGGGGTCGGGCAGGGGGCTGGGCGTTGCGTCGCG
GAAGCCCTCGGGTCCCGGGCGAAGGTTCGTGAACGACCTTGGGACCGCCC
AGTTCACTGGCAAGCAGAAAAAGGAGCACGAGGCAGCCAAGATAGTGGCG
CTGGGGGGCCAGGCGCCCAAGGCACAGAAAATGCCCTACAAGATACTCAT
GGGGATGAGGAATAAGGCCAAGGAGAGGGAGGCAAAGCGGCTGCAGGCGG
AGAAGGAATCAGGCGCGGCAGCAAGAATGGCGTCATGAGGGTGCGGGTGG
AAAGCGGAGGTAGCAATGCTCAGCAACGAAGAAAGCGGTAGTTGGCACAA
AGTAATATTTCAT
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protein sequence of jgi.p|Trimin1|352953

>Trimin1|352953|estExt_Genemark1.C_Ctg_1370050 ID=Trimin1|352953|estExt_Genemark1.C_Ctg_1370050|Name=jgi.p|Trimin1|352953|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=496bp
MASAYDARAAGYDPTAWARERQERIHKAAQRPRPSWNNDFVDSNALAPEA
DSSGRRHGTDTVIGRRRDSGGTSSRHAAGASGDGGANLAGGDAEPWRHRH
TTTPKLPWDDGPAPPAPAADADARSGSAENGYHRADARRAHTCAANSAQE
WGDGAAAGWEGGGAMLGTHSGGGGSGGGGGGSRPELLMLLKQKMNSRKGP
RKLSGSLPSRSKSATLPARTSFADMGQPQEYADVQLQQCPDCGRRFNEKA
FGKHVSVCRQVFLQKRKAFDAAKMRVAGTEMAEFTAKTPSGRGSAAAAAR
RAASAASARGGATGDDQPVAGNGGAKSAKWRQQSAAFREAIRSARMVTQA
QAKGIPLARLPAAAAAAPDPSLVPCPHCARRFNEAAAERHIPRCSSIRAQ
PSRLAKGSGRGLGVASRKPSGPGRRFVNDLGTAQFTGKQKKEHEAAKIVA
LGGQAPKAQKMPYKILMGMRNKAKEREAKRLQAEKESGAAARMAS*
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mRNA from alignment at Contig_137:378767..385761+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13833 ID=mRNA_13833|Name=jgi.p|Trimin1|352953|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=6995bp|location=Sequence derived from alignment at Contig_137:378767..385761+ (Tribonema minus UTEX_B_3156 )
ATGGCGTCTGCATACGATGCGCGAGCAGCAGGCTATGATCCCACGGCGTG
GGCCAGGGAGAGGCAGGAGCGCATCCACAAGGCGGCTCAGGTATGAGCTC
TTGCTTTTAGCCTGCTTCAACTGTTGTGCCATTCAACCGCGGCAGCTTTA
ATCACCATCATATGGATAGATTACCCATTATCCCATTGCAGACAGAGATG
ATCTCTCATATTCACTCGCTGTCCTAAACTGGGCAGCTAGCTTGATAACA
CATATCTTCGCAACCTTCGCTTATGTGCCCACATTTTTTTTTTTTTCCTC
GGCCTCGGCGACGTCTCCACACCTGGCTTGTTGATACTTGCCAGGCTCTA
CGAGTTTTGACTTCGCTGCACGAGCCTAGCTTATTATGAACACGCAAATT
ATCTGACGATCAGCATCATGCGTTCTTGAAGTGCAGCTACGGGAAGAGAG
GAAGTTGGGAAGCGCAGCTCTGACTGATGAGTTCACATTCAAGCCGAAGC
TCATGAGCAGGCAGGCGCAGCAGGCATCCGCAGCAGCGAAACTGGCACAC
GGATCCAGTGTTCCTCTCAGGCGAGGCAGCTACAATCTCGATGTTACTTC
CGACGCCATGCGAGGCGCTTACGCCATGGGCCAGCAGCACAGCTACTCCT
CATCGAAACCACCACAATCAGCAGCAGATGGAGGGGACTCTTTGGATGAT
CTAGCGCGCACAGCGGGTCAGGAAATTGCTTCAGGGGCTCCCATGCGCGG
CAGCGCAAATGTCAGCATGCAGCAGCCTCTGCCGCGAGCTGCCGGCGGGC
ACAGCAAAACTGCCAACGGTGGCGGCGCTGAGGCGGGAGCGAGTTATGGT
GCCATGCACGCTGGCAGGAAGTGAGTGAAGTCAACCCACAGCTCGTGCAC
CGAGTCTGCTGTCCTTCAAATATACCTTGCTTTGCAGCAAAGGTGTGACA
TGATGACATTGTGCACAATTGATCTTCTGAGGCGTAAGCAGCAGCGACCG
TCTGTCCCGAGAGTCCTTGCATGCGCCACTGTGCAGCAGCATATGCTCCC
AGTTTCATGTGCAGTTACCCCAAATACACAAATGGTCATGCTGTTGAGCT
CGCTCGTGTGAAATGCAGGGGCGGCCATGCAGAGCAGCGGCCAAGGCAGC
CCGAATCGGATTTACATGATCCACAGCCCTATGGCCGTCGGATGAGCAAT
ACCAGCACATCCAGCTCTGGCCACAACACCAAGCAGAGGCCGCGGCCCAG
CTGGAACAACGACTTTGTTGACAGCAACGCGCTCGCACCGGAGGCGGACA
GCAGCGGCAGGCGGCATGGAACTGACACGGTCATCGGCAGGTACGTATGT
GCATACTTTGAAGTATACCCATGTATGGCATGTCTGCCAACAACTTCAAC
TCCAGCGCCCCTTGGCAGTCGTTGCTTGTGCAGTGCTTAGCAGATAAACA
CACGCGCACATATTGCGCATGGACATCAGCACGCCCTGGTGTGCAGTGAG
GCACCGCAACTCTTGTGTCATGAATGCGTGTGGCCTAGCACTCGCATGCT
TGGCTTGGCATAAGCGGCACAGACTTATCAGCTGCGCCTCTGGTCCCCAC
TTTATGTATTTCTCATCTCAATCACCTGAATAACCTGGTTCAGACGGCGA
GACAGCGGCGGCACCAGCTCTCGGCATGCAGCGGGAGCATCCGGCGATGG
CGGCGCAAACTTGGCGGGCGGCGATGCTGAGCCGTGGCGACACAGGCACA
CCACCACGCCAAAGCTGCCATGGGACGACGGCCCTGCGCCCCCTGCCCCT
GCCGCAGACGCCGACGCGCGCAGCGGTAGCGCAGAGAACGGGTACCACAG
GGCGGACGCGCGCAGGGCGCACACGTGCGCCGCCAACAGCGCTCAGGAGT
GGGGGGACGGCGCGGCGGCGGGGTGGGAGGGGGGGGGAGCGATGCTGGGC
ACTCACAGCGGCGGCGGCGGCAGTGGCGGCGGTGGGGGTGGGTCGAGGCC
GGAGCTGCTGATGCTGCTGAAGCAGAAGATGAACAGCAGGAAGGGGCCGC
GCAAGCTCTCTGGGAGTTTGCCCAGCAGGAGCAAGAGCGCCACGCTGCCG
GCGCGCACGAGCTTTGCGGACATGGTGAGCACAAATGCTTATGATGTCTA
TTTTCATACCTGCATACACTGCCTGTGAGAATGAAGTAGCTTCCTCACAG
TACTCCTGGGCTGGCGCGTCGCATAGTCTCGGATGGAGCTTATAAATAGT
GTTATCAAAAGAGCAAATGGTGAAGCAGTGCTCACACAGAGGCAATCACT
TGCTCCAAAGTGCAGCTTGTCTCCGCATGCGGTAGTGGTCGTTAGCGTTT
GGTTAGTCTGCAGTGTTTCAGTTGTCGGCGTGGAGTCACCGGCACGTGAA
TGCAGGATGCATCAGAGCGATGCGCTGAGTCAACCTCTGCATGTGTACTC
TCACTGGGAACGCTGAGATGGCATGCGCACGGTTTATGCAGAGTTGTTTC
CAGTTCTGCAGTCAGCAGAGACTAACACGAACCCTCACCCTAGGCTTGGA
TCAGGTTAACTCTAGCCCTAACTTTCGCAGACAGGACGGGCGGCCTAATC
TCAGTTCAGTACATTGTATACAATGCACTGCAGTGTACTGACTGCTGGTG
GTTTCAAGCGAGCATTCAGTGTGATAGCCACAACCAACAGCAAATGATGC
TGCATGACATGTGCATGCAGTCACATGGCTCGTCATGAGCAACATGTACT
CACTATACCTGAGGCTGGGTAATCTCACTTGGCCCATACGCAGCGATGTC
GGTGCTGTCCATTGGCAGCAGCAACCTCTCATCACAATGCTTTGGTCGGT
CTACAGTTCAATTGCGCATGGACTACCATACTCGATGCTTTGAAAAAGGA
TCGACCTCAACATGTATATTTCAAGCATAGTGGTTTCACTGCAAACGCTG
ACGTGATAAGCGTAAAGTGCAATGTCATTGCACCGCGCTATAAGCAAGAC
CATCATTTTAAGTGTAGAGGTTATGCGCCCAGCGGCAAGGCTTACTAGCC
AAGCAGCAGCACTCAGCTCTGTGAACTCACCTCTGCTATTCATCATTCCA
GCTGACCACTCACAAATGTCACGCAGGGTGCATGTCATCGCAGTTTTGTC
ATGTAGTGACATCTCATCTCTTGGTGTTTCCTCCACTCCGTTTGCTGCAG
CCTGGCTCAGGCGCGTCCAAAGCTCCATGGGAGCACTTAACAACAGACGC
ATCTGAGCAACCTGCTTCATCATCGACGTCAACATATACACCAGACTGGG
CTACTGCCGACGGCGCGCGAGAGCAAAGGCGCAGCATGCCCAACACTAAC
ATAGGCACTAATGGCAGCAGTAATGGCCATTACCAAGACCAGCGGCAGCA
GTCGCATGGCAGCGCGAAAGCGCCATCGGGTCAGCAGCAGCAGCGGCAGC
AGCGGCAGCGGCAGCAGCAACAACACGTAGCAGACGGTTATGGACGCAGC
AGTGATAGACTGGGTTTAGCCAGCGGTTATGATGCCAGGATGCCTCATGA
CGCACCACAAGGTACAGGTGAGCATAGCTTTTTGCACCATTACATTGTGT
TATCAAGCGCATTGTGGTGAATTACCATCAACGTTGCATTTATGTTTGCC
TGCAGAACGTTTGCCTGGAGAAAATACCAGGTTCAGTGCCTACCCTGACC
CCCTAAACCTAACCCTAACCCTAGGCAAGAGTTCACCGATCACCGTAACC
TGTGTTTTGACCATTGTTGTCAGGTAGGTAACACAGTACAAGTCATAATG
ATGTGTACTGGGATGCTCCGCAAGCGCAATTGTGAATTGAAGCAGGCACA
ATATTAACATACTTCGAAGTAGATGTGTCAGGCGCTTCATCTCAAGAGAA
CATATTTGTGGACAATGTTGTTTGCCACACTTGTTAAAATATGCTGCTGA
GTGGAATGTCCGCAGGCATTGTGGCAAAGGGAATGTGGTACAGGCAGTGC
TTATGCAAATGAAGCTGTGTTTAACACCGGCTCACTGTCTGCTGTGAGGC
ATCGCCACTGCTGCCAAAGCAGCAACACTGCAGACTTCATCATTGTGAGA
TATTGCATGCTGCTTAACAAGTCATGCTTCACAACACATCACAATGCACT
GCTGCGGTTGCCACCAGACGCATCGATGACCACATTGTTGCCATCTCATC
TCAGGCTCCACACGGCAGAGCAGCGTACAAGACAGAAGTACAAGCAGGGG
TGGCAGCAGAGGCGGCAGTCGAGGCAGTGCTGGAGCTACCCCGTACAGCA
ACGACGGTGCCATTACCGCTCCTTTTGGGGGGGCAGAGGGACAGCCGCAG
GAGTACGCAGACGTGCAGCTGCAGCAGTGCCCAGACTGTGGGCGCAGGTT
CAATGAGAAGGCCTTTGGCAAGCACGTCAGCGTGTGCCGCCAGGTGTTTC
TGCAGAAGCGCAAGGCGTTTGACGCTGCGAAGGTACGCTCTTGTGAGCTG
ACTGGGTGCTCGGCTCTAGCACTTACCCTAACCCTTACTCTAACCCATAT
CATAATCCTAACCCTTTAGCATTCATGCCTGATGCCATGCACACTGTGTC
AGCAGGTGTTTGGCATGTCATGAGCCTCGTCATGTTCTGCATAGGGCATG
GGCTCATGTCAAGCGTGTGCCATGCAGGCCCCAAATTGAGACTTCTCGTG
TGTGCACCAAAGTTCGTGTCTTCTTTACAGTTCAAGAGTACACAAGCACA
TCAGTTGTCGCATCATCTGACCACTTCAATGCTCTCGTGCAAACCTCTCT
CACCCCATCTCTGCCCCTTCACTAGAAAGCATTGTGAAACCACAAAGGCT
GGTAACGCACATCAATGCAGATAGCTGTGCCATATACACACAGAAGTGTG
GTGTGTACTTGCAGCTGGCACGAGACATGCACCCAAATTAGTTGCTGCCC
ATGCGCCTGTCATGTCCGACGGTATGCCAATTGAACTATCACATGCCTTT
CCTCATCCCACAGCTTTCCTCATTTCTCACCTTGCATCGCCGTGCACGTC
ACACGCGCACCCAACGCCGAGCAGATGCGCGTGGCGGGCACAGAAATGGC
GGAGTTCACAGCCAAAACCCCCAGCGGCCGCGGCAGCGCGGCAGCTGCAG
CACGCAGGGCAGCGTCCGCCGCCTCCGCGCGTGGCGGCGCCACCGGCGAC
GACCAGCCAGTTGCTGGCAACGGCGGCGCCAAAAGCGCCAAGTGGCGGCA
ACAGTCGGCGGCGTTCCGCGAGGCCATCCGCAGCGCGCGCATGGTCACGC
AGGCGCAGGCCAAGGGCATACCGCTCGCGCGCCTGCCGGCGGCGGCGGCG
GCGGCGCCGGACCCGTCGCTGGTGCCGTGCCCGCACTGCGCGCGCCGCTT
CAATGAGGCCGCCGCGGAGCGGCACATACCGAGGTGCAGCAGCATCCGCG
CGCAGCCGTCGCGGCTGGCCAAGGGGTCGGGCAGGGGGCTGGGCGTTGCG
TCGCGGAAGCCCTCGGGTCCCGGGCGAAGGTTGTGAGGATTGCGTAAGAG
AGGGTGGGTTTTTGGTGGGGCATTGTTGCCCTCCATTCAGTGATCAAGCA
CAGAGCTTGCTTGGCCGGCGTTGTTGCCCTGCATTCAGTGATCAAGCACA
GAGCTCGCTTGGCCGACTGTACAGCGCAGATGAGTCTATGCAAGTGTCCA
CAAGAGGCCCATGTCTCCTCAAGACGTGGTCGCCTGCAAGCTGCACGCAG
CTTGATGGCAGGCTCGCTGCTGCCGCTTCATAAAACCCATGCTGCTGGCT
ATATGCAGAAGAAGCCTATGGGATGCTGCTGTTTTGTGAATTCAATGCAA
AGGGCTTTGCGCACACAAATGGTCCAATGACCAATGTCAAGATATGCAAT
GGTGTAAAGTGTCAAGAGGCTGCTCTGGCGCTATTCGACGGGGTGACGCT
GGCTTGAATTCTTAACAGGGTGTCTAGTGGTGCAGCCATGAGATCTCTTT
CTTGCTGATCACAGCTGCAGCAGCAAGCGTTTGTACGAGGTTCTCAAGCA
GTTGTCTCTCAAGCTGCTTCACCGCATGCAGTGCTGAAGTCTAGTACGTT
CAACTTCAACCTACGCTCACCTCAAAAACTAATATGCGCACTGTGATGGC
GTTGGATGAAACATCACAAATCTTACAGCGTGACCCACTTTTCGGAGGGC
AAACCAGTGAAAACGCCGATGGAGTAGAGGAGTTCAAGTTGGCCACTTCA
AATACAACTTCAAGGAGAAAACTTCAAATACAACTTGAAGTGGGAGGAGA
GTTGGGCATCGAGCGCGACTTTGGAGGTGATCATCAAGCAGCAAAGCTAC
ATTTTCAGCAGCATCGACGATAGCAGCAGCAGCGACGTACAATGACTAAG
CCCCCTTCGCGACAGGTAGTTGTCGTGCAGGCGCCAACAACCTATTCCGC
AGCCCAGGCGAACCCAAAGAGGCCTTCAAAGCCTGCGGCTTCTCATTCAG
AACCATCTGCAGCAGCAGAAGGCAAGGCACGCTCCAAGAAAAGGGGTAGA
GCAGGGGAGACCTCTGAGTTCAGAGCTGCCTGGGTGAGCGTGAACGACCT
TGGGACCGCCCAGTTCACTGGCAAGCAGAAAAAGGAGCACGAGGCAGCCA
AGATAGTGGCGCTGGGGGGCCAGGCGCCCAAGGCACAGAAAATGCCCTAC
AAGATACTCATGGGGATGAGGAATAAGGCCAAGGAGAGGGAGGCAAAGCG
GCTGCAGGCGGAGAAGGAATCAGGCGTAATTTCAGGTGTGAGCGCCAGTA
CGAACAACGCAAAGCGACGAAAACGGAACTTTGATTCAGCAAGGGGAGGA
GGTGCAACGGCATCTAAGCGTGTGGACTTTGGCCCCGCGCCTGGAGGCGG
CAGCAAGAATGGCGTCATGAGGGTGCGGGTGGAAAGCGGAGGTAGCAATG
CTCAGCAACGAAGAAAGCGGTAGTTGGCACAAAGTAATATTTCAT
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Coding sequence (CDS) from alignment at Contig_137:378767..385761+

>mRNA_13833 ID=mRNA_13833|Name=jgi.p|Trimin1|352953|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1488bp|location=Sequence derived from alignment at Contig_137:378767..385761+ (Tribonema minus UTEX_B_3156 )
ATGGCGTCTGCATACGATGCGCGAGCAGCAGGCTATGATCCCACGGCGTG
GGCCAGGGAGAGGCAGGAGCGCATCCACAAGGCGGCTCAGAGGCCGCGGC
CCAGCTGGAACAACGACTTTGTTGACAGCAACGCGCTCGCACCGGAGGCG
GACAGCAGCGGCAGGCGGCATGGAACTGACACGGTCATCGGCAGACGGCG
AGACAGCGGCGGCACCAGCTCTCGGCATGCAGCGGGAGCATCCGGCGATG
GCGGCGCAAACTTGGCGGGCGGCGATGCTGAGCCGTGGCGACACAGGCAC
ACCACCACGCCAAAGCTGCCATGGGACGACGGCCCTGCGCCCCCTGCCCC
TGCCGCAGACGCCGACGCGCGCAGCGGTAGCGCAGAGAACGGGTACCACA
GGGCGGACGCGCGCAGGGCGCACACGTGCGCCGCCAACAGCGCTCAGGAG
TGGGGGGACGGCGCGGCGGCGGGGTGGGAGGGGGGGGGAGCGATGCTGGG
CACTCACAGCGGCGGCGGCGGCAGTGGCGGCGGTGGGGGTGGGTCGAGGC
CGGAGCTGCTGATGCTGCTGAAGCAGAAGATGAACAGCAGGAAGGGGCCG
CGCAAGCTCTCTGGGAGTTTGCCCAGCAGGAGCAAGAGCGCCACGCTGCC
GGCGCGCACGAGCTTTGCGGACATGGGACAGCCGCAGGAGTACGCAGACG
TGCAGCTGCAGCAGTGCCCAGACTGTGGGCGCAGGTTCAATGAGAAGGCC
TTTGGCAAGCACGTCAGCGTGTGCCGCCAGGTGTTTCTGCAGAAGCGCAA
GGCGTTTGACGCTGCGAAGATGCGCGTGGCGGGCACAGAAATGGCGGAGT
TCACAGCCAAAACCCCCAGCGGCCGCGGCAGCGCGGCAGCTGCAGCACGC
AGGGCAGCGTCCGCCGCCTCCGCGCGTGGCGGCGCCACCGGCGACGACCA
GCCAGTTGCTGGCAACGGCGGCGCCAAAAGCGCCAAGTGGCGGCAACAGT
CGGCGGCGTTCCGCGAGGCCATCCGCAGCGCGCGCATGGTCACGCAGGCG
CAGGCCAAGGGCATACCGCTCGCGCGCCTGCCGGCGGCGGCGGCGGCGGC
GCCGGACCCGTCGCTGGTGCCGTGCCCGCACTGCGCGCGCCGCTTCAATG
AGGCCGCCGCGGAGCGGCACATACCGAGGTGCAGCAGCATCCGCGCGCAG
CCGTCGCGGCTGGCCAAGGGGTCGGGCAGGGGGCTGGGCGTTGCGTCGCG
GAAGCCCTCGGGTCCCGGGCGAAGGTTCGTGAACGACCTTGGGACCGCCC
AGTTCACTGGCAAGCAGAAAAAGGAGCACGAGGCAGCCAAGATAGTGGCG
CTGGGGGGCCAGGCGCCCAAGGCACAGAAAATGCCCTACAAGATACTCAT
GGGGATGAGGAATAAGGCCAAGGAGAGGGAGGCAAAGCGGCTGCAGGCGG
AGAAGGAATCAGGCGCGGCAGCAAGAATGGCGTCATGA
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