mRNA_13828 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|176428
Unique NamemRNA_13828
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|176428 vs. uniprot
Match: A0A835Z8X6_9STRA (CheY-like superfamily protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8X6_9STRA)

HSP 1 Score: 228 bits (581), Expect = 7.750e-76
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 1 
Query:    1 MRGLILVIDDTKSVRTLVGKALDWWGFDIEYATNGLQGLEALKKQQYALVITDLQMPVLDGLECVQRFRAWEWQRQIILATSANCEAADMDLCIDSGADGFLPKPLSLSLL 333
            MRGLILVIDDTKSVRTLVGKALDWWGFDIEYATNGLQGLEALKKQQYALVITDLQMPVLDGLECVQRFRAWEWQRQIILATSANCEAADMDLCIDSGADGFLPKPLSLSLL
Sbjct:    1 MRGLILVIDDTKSVRTLVGKALDWWGFDIEYATNGLQGLEALKKQQYALVITDLQMPVLDGLECVQRFRAWEWQRQIILATSANCEAADMDLCIDSGADGFLPKPLSLSLL 111
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BLAST of jgi.p|Trimin1|176428 vs. uniprot
Match: A0A7S1FVG9_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FVG9_9STRA)

HSP 1 Score: 102 bits (254), Expect = 4.680e-23
Identity = 50/111 (45.05%), Postives = 74/111 (66.67%), Query Frame = 1 
Query:   16 LVIDDTKSVRTLVGKALDWWGFDIEYATNGLQGLEALKKQQYALVITDLQMPVLDGLECVQRFRAWE-----WQRQIILATSANCEAADMDLCIDSGADGFLPKPLSLSLL 333
            +VIDD+ ++R  +G+AL   GFD+ +A NGL+GL+ALK+  + +V+ D  MP++DGL+CVQ++RAWE     + RQ I+  SA+    D D  +  G D FL KP+SL  L
Sbjct:  606 IVIDDSLTIRKSIGRALSRVGFDVTFACNGLEGLDALKETLFDIVLCDFLMPIMDGLDCVQQYRAWETLHRPYFRQYIVGISAHATETDSDKGLKVGMDKFLSKPISLKTL 716
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BLAST of jgi.p|Trimin1|176428 vs. uniprot
Match: A0A7S1DHP0_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DHP0_HEMAN)

HSP 1 Score: 100 bits (250), Expect = 1.580e-22
Identity = 51/116 (43.97%), Postives = 75/116 (64.66%), Query Frame = 1 
Query:    7 GLILVIDDTKSVRTLVGKALDWWGFDIEYATNGLQGLEALKKQQYALVITDLQMPVLDGLECVQRFRAWEWQR-------QIILATSANCEAADMDLCIDSGADGFLPKPLSLSLL 333
            G+IL+I+D  S R L+ K L+  G+ +  A NG++GLE L++Q++ +V+ D+ MPV+DG+EC +RFR WE Q+       Q I A SAN EA+D+    D G D F PKP+ +  L
Sbjct:  560 GIILLIEDDVSTRKLMTKGLEKQGYTVVQAGNGVEGLEKLQEQRFNMVLCDIMMPVMDGVECTRRFRQWEKQQSSRSGGAQYICALSANTEASDVAKTRDVGMDDFFPKPVKIQEL 675
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BLAST of jgi.p|Trimin1|176428 vs. uniprot
Match: A0A7S0Z3C2_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0Z3C2_9CRYP)

HSP 1 Score: 95.5 bits (236), Expect = 1.200e-20
Identity = 47/117 (40.17%), Postives = 74/117 (63.25%), Query Frame = 1 
Query:    4 RGLILVIDDTKSVRTLVGKALDWWGFDIEYATNGLQGLEALKKQQYALVITDLQMPVLDGLECVQRFRAWEWQR-------QIILATSANCEAADMDLCIDSGADGFLPKPLSLSLL 333
            +G +L+I+D    R L+ KAL+   F +  A NG +GLE LK+ +Y++V+ D+ MPV+DG+EC++RFR WE  +       Q + A SAN EA+D++   + G + F PKP+ +  L
Sbjct:  478 KGTVLLIEDDVPTRRLMTKALEKQKFSVVQAGNGEEGLEKLKESRYSMVLCDIMMPVMDGVECIRRFRQWEQGQASREGGEQFVCALSANTEASDVEKTRNVGMNDFFPKPVKIKEL 594
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BLAST of jgi.p|Trimin1|176428 vs. uniprot
Match: B7G5E0_PHATC (Diatom response regulator 3 (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G5E0_PHATC)

HSP 1 Score: 94.4 bits (233), Expect = 1.760e-20
Identity = 48/110 (43.64%), Postives = 70/110 (63.64%), Query Frame = 1 
Query:   16 LVIDDTKSVRTLVGKALDWWGFDIEYATNGLQGLEALKKQQYALVITDLQMPVLDGLECVQRFRAWEWQ----RQIILATSANCEAADMDLCIDSGADGFLPKPLSLSLL 333
            LVIDD+K VR ++  AL   GF+   A NGL+GL AL++  Y LV+ DL MPV+DGL+CV+ +R WE      +Q I+A SA+    D++ C+  G D +  KP+++  L
Sbjct:  120 LVIDDSKVVRKILANALSRLGFETMLAVNGLEGLRALQESTYDLVLCDLLMPVMDGLDCVRSYRHWESNNRSTQQHIVAMSAHASEVDIERCLKLGMDCYYSKPITMETL 229
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BLAST of jgi.p|Trimin1|176428 vs. uniprot
Match: A0A836CJU7_9STRA (CheY-like superfamily protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJU7_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 2.020e-20
Identity = 51/113 (45.13%), Postives = 69/113 (61.06%), Query Frame = 1 
Query:   16 LVIDDTKSVRTLVGKALDWWGFDIEYATNGLQGLEALKKQQYALVITDLQMPVLDGLECVQRFRAWEW------QRQIILATSANCEAADMDLCIDSGA-DGFLPKPLSLSLL 333
            LVIDDT SVR L+ K L+  G   + A NGL+GL+ ++ ++Y++V+ D  MPV+ G+EC+QRFR WE        RQ I+  S+  E  D D    SGA D FL KP+ L  L
Sbjct:    2 LVIDDTGSVRKLLCKVLESKGLRCDVARNGLEGLQTMRTRRYSVVLCDAFMPVMSGMECIQRFRQWEGVHRAEQPRQFIVGISSYLEGFDRD----SGAIDAFLSKPIDLKWL 110
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BLAST of jgi.p|Trimin1|176428 vs. uniprot
Match: A0A6H5JFN7_9PHAE (Response regulatory domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFN7_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 7.580e-20
Identity = 48/109 (44.04%), Postives = 67/109 (61.47%), Query Frame = 1 
Query:    4 RGLILVIDDTKSVRTLVGKALDWWGFDIEYATNGLQGLEALKKQQYALVITDLQMPVLDGLECVQRFRAWEW----QRQIILATSANCEAADMDLCIDSGADGFLPKPL 318
            RG  L++DDT S+R ++   L     D++ A NG++GLE LK ++Y +V+ D+ MPV+DG EC+ RFR WE      RQ I A SAN         +D+G DG LPKP+
Sbjct:   55 RGTCLIVDDTASIRKMMRHFLKQ--HDVDLACNGVEGLERLKNKEYDIVLMDISMPVMDGRECLARFRKWEAVNRPNRQRIYAMSANVVE------VDTGFDGSLPKPM 155
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BLAST of jgi.p|Trimin1|176428 vs. uniprot
Match: B7FUD4_PHATC (Light histidine kinase n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FUD4_PHATC)

HSP 1 Score: 91.7 bits (226), Expect = 2.800e-19
Identity = 43/111 (38.74%), Postives = 73/111 (65.77%), Query Frame = 1 
Query:   16 LVIDDTKSVRTLVGKALDWWGFDIEYATNGLQGLEALKKQQYALVITDLQMPVLDGLECVQRFRAWEWQ-----RQIILATSANCEAADMDLCIDSGADGFLPKPLSLSLL 333
            LVIDD+  VR  + + L   G+++E A++G++GL ALKK+ Y++ + D  MP++DGL+CVQ++R WE +     RQII+  SA+    D ++    G D ++ KP+++ +L
Sbjct:  534 LVIDDSLVVRKTLVRGLSSLGYEVETASDGMEGLNALKKRIYSVCLCDFLMPIMDGLDCVQQYRVWEAEYRFSHRQIIVGISAHATKKDSNIARQIGMDDYMAKPITIKML 644
[Close]
BLAST of jgi.p|Trimin1|176428 vs. uniprot
Match: L1JXG5_GUITC (Uncharacterized protein n=2 Tax=Geminigeraceae TaxID=589343 RepID=L1JXG5_GUITC)

HSP 1 Score: 90.9 bits (224), Expect = 5.030e-19
Identity = 43/111 (38.74%), Postives = 70/111 (63.06%), Query Frame = 1 
Query:   13 ILVIDDTKSVRTLVGKALDWWGFDIEYATNGLQGLEALKKQQYALVITDLQMPVLDGLECVQRFRAWEWQR----QIILATSANCEAADMDLCIDSGADGFLPKPLSLSLL 333
            +LV++D    RTL+   L   G+ +  A NG +GLE ++++ + +V+ D+ MPV+DG+ECV+R RAWE  +    Q I A SAN + +D++ C+ +G   F PKP+ +  L
Sbjct:  481 VLVVEDDVPTRTLMVHGLKRKGYVVHQAGNGEEGLEQMQRRMFHMVLCDIMMPVMDGVECVKRLRAWESTQSRTSQFICALSANTDVSDVNKCMGAGMSDFFPKPVKIPAL 591
[Close]
BLAST of jgi.p|Trimin1|176428 vs. uniprot
Match: A0A6H5K5F2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5F2_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 2.090e-18
Identity = 48/109 (44.04%), Postives = 67/109 (61.47%), Query Frame = 1 
Query:    4 RGLILVIDDTKSVRTLVGKALDWWGFDIEYATNGLQGLEALKKQQYALVITDLQMPVLDGLECVQRFRAWEW----QRQIILATSANCEAADMDLCIDSGADGFLPKPL 318
            RG  L++DDT S+R ++   L     D++ A NG++GLE LK ++Y +V+ D+ MPV+DG EC+ RFR WE      RQ I A SAN         +D+G DG LPKP+
Sbjct:  270 RGTCLIVDDTASIRKMMRHFLKQ--HDVDLACNGVEGLERLKNKEYDIVLMDISMPVMDGRECLARFRKWEAVNRPNRQRIYAMSANVVE------VDTGFDGSLPKPM 370
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|176428 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z8X6_9STRA7.750e-76100.00CheY-like superfamily protein (Fragment) n=1 Tax=T... [more]
A0A7S1FVG9_9STRA4.680e-2345.05Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A7S1DHP0_HEMAN1.580e-2243.97Hypothetical protein n=2 Tax=Hemiselmis andersenii... [more]
A0A7S0Z3C2_9CRYP1.200e-2040.17Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
B7G5E0_PHATC1.760e-2043.64Diatom response regulator 3 (Fragment) n=2 Tax=Pha... [more]
A0A836CJU7_9STRA2.020e-2045.13CheY-like superfamily protein (Fragment) n=1 Tax=T... [more]
A0A6H5JFN7_9PHAE7.580e-2044.04Response regulatory domain-containing protein n=1 ... [more]
B7FUD4_PHATC2.800e-1938.74Light histidine kinase n=1 Tax=Phaeodactylum trico... [more]
L1JXG5_GUITC5.030e-1938.74Uncharacterized protein n=2 Tax=Geminigeraceae Tax... [more]
A0A6H5K5F2_9PHAE2.090e-1844.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_137contigContig_137:356539..357653 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|176428|e_gw1.137.113.1
DescriptionHis Kinase A (phosphoacceptor) domain
COG categoryT
Max annot lvl2836|Bacillariophyta
EggNOG OGsCOG0642@1|root,KOG0519@2759|Eukaryota,2XHUE@2836|Bacillariophyta
Evalue5.23e-21
Seed ortholog2850.Phatr47930
Hectar predicted targeting categoryother localisation
TranscriptId176750
TrackFilteredModels1
ProteinId176428
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|176428gene_13828Tribonema minus UTEX_B_3156 geneContig_137 356539..357653 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13828_1exon_13828_1Tribonema minus UTEX_B_3156 exonContig_137 356539..356760 +
exon_13828_2exon_13828_2Tribonema minus UTEX_B_3156 exonContig_137 357543..357653 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13828CDS_13828Tribonema minus UTEX_B_3156 CDSContig_137 356539..356760 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|176428Trimin1|176428|e_gw1.137.113.1Tribonema minus UTEX_B_3156 polypeptideContig_137 356539..357653 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13828 ID=mRNA_13828|Name=jgi.p|Trimin1|176428|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=333bp|location=Sequence derived from alignment at Contig_137:356539..357653+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGGTCTCATTCTGGTTATCGACGACACCAAGTCGGTGCGCACGCT
GGTGGGCAAGGCGCTCGACTGGTGGGGCTTTGACATTGAGTACGCGACCA
ACGGCCTGCAGGGTCTCGAGGCGCTCAAGAAGCAGCAGTACGCGCTGGTC
ATCACCGATCTGCAGATGCCCGTGCTGGATGGCCTCGAGTGCGTGCAGCG
CTTCCGCGCATGGGAGTGGCAGCGCCAAATCATCCTGGCCACCAGCGCCA
ACTGCGAGGCCGCGGACATGGACCTCTGCATCGACAGCGGCGCCGATGGC
TTCCTGCCCAAGCCCCTCAGCCTCTCGCTGCTC
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protein sequence of jgi.p|Trimin1|176428

>Trimin1|176428|e_gw1.137.113.1 ID=Trimin1|176428|e_gw1.137.113.1|Name=jgi.p|Trimin1|176428|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=111bp
MRGLILVIDDTKSVRTLVGKALDWWGFDIEYATNGLQGLEALKKQQYALV
ITDLQMPVLDGLECVQRFRAWEWQRQIILATSANCEAADMDLCIDSGADG
FLPKPLSLSLL
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mRNA from alignment at Contig_137:356539..357653+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13828 ID=mRNA_13828|Name=jgi.p|Trimin1|176428|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1115bp|location=Sequence derived from alignment at Contig_137:356539..357653+ (Tribonema minus UTEX_B_3156 )
ATGCGCGGTCTCATTCTGGTTATCGACGACACCAAGTCGGTGCGCACGCT
GGTGGGCAAGGCGCTCGACTGGTGGGGCTTTGACATTGAGTACGCGACCA
ACGGCCTGCAGGGTCTCGAGGCGCTCAAGAAGCAGCAGTACGCGCTGGTC
ATCACCGATCTGCAGATGCCCGTGCTGGATGGCCTCGAGTGCGTGCAGCG
CTTCCGCGCATGGGAGTGGCAGGTGCATCACCATCTGCCTTTACCTTACT
TCAAGTTGCTCTAGAACAAGCAGTACACTACGCGCTCGTCATCACCGACC
TGCAGATGCCCGTGCTCGATGGGCTCGAGTGCGTGCAACGCTTCTGCGCG
TGGGAGTGGCTGGTGCGTAACCTTCTCCTTACTTCAAGTTGAACTTGCCG
AGGGTGGGAGCTGCTGCTGTACAGTAGTATGTGCTGCTTGAGCGGTTCAG
CTCATGAGTCCACCTCATGTTGACATACATATGTACGGCAGGTGTACCTG
ACAACGCCAACTCGTTTTTTTTACTGCATAGTGGGTGCAATGCTGCCATC
ATACCTTGCACCCATGCCGATGATACCATGGCACCCGTCACACAGGCTCT
CTACATACACTGCTCTTCACTGAGTTCCTCAACAACGCCAAATATGTTGT
ATACGTACATAGGTTGGTGAGTAGCTGAGACCACTTGGCAGGTGCTGCTC
TGCACCGCGTCATGCGAGTTTTCTCACCGCCTCGCCCCCCCCCCCCCCCC
CCCCCCCCATCATCACCTCCCCCCAGGGTTAGGATTACTTAGGTAGTGTT
AGTAGGTGCAACGCAGTCATCATACCTTGGATCCACTTGAATGGTAACAT
GACACTCGCCGCATAGGCTCCACATGTATCGCTCTTTACTGTATACTGCT
CTGCACCGCATGGTGCGAGTCTTCTCAACCCCCCTTCCCCCCCCCAATCA
ACCCCCCCCCAGGAGCGCTGGCTCAAGCCGACGCAGCAGAAGCCGCAGCA
GCAGCGCCAAATCATCCTGGCCACCAGCGCCAACTGCGAGGCCGCGGACA
TGGACCTCTGCATCGACAGCGGCGCCGATGGCTTCCTGCCCAAGCCCCTC
AGCCTCTCGCTGCTC
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Coding sequence (CDS) from alignment at Contig_137:356539..357653+

>mRNA_13828 ID=mRNA_13828|Name=jgi.p|Trimin1|176428|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=333bp|location=Sequence derived from alignment at Contig_137:356539..357653+ (Tribonema minus UTEX_B_3156 )
ATGCGCGGTCTCATTCTGGTTATCGACGACACCAAGTCGGTGCGCACGCT
GGTGGGCAAGGCGCTCGACTGGTGGGGCTTTGACATTGAGTACGCGACCA
ACGGCCTGCAGGGTCTCGAGGCGCTCAAGAAGCAGCAGTACGCGCTGGTC
ATCACCGATCTGCAGATGCCCGTGCTGGATGGCCTCGAGTGCGTGCAGCG
CTTCCGCGCATGGGAGTGGCAGCGCCAAATCATCCTGGCCACCAGCGCCA
ACTGCGAGGCCGCGGACATGGACCTCTGCATCGACAGCGGCGCCGATGGC
TTCCTGCCCAAGCCCCTCAGCCTCTCGCTGCTC
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