mRNA_13828 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|176428 vs. uniprot
Match: A0A835Z8X6_9STRA (CheY-like superfamily protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8X6_9STRA) HSP 1 Score: 228 bits (581), Expect = 7.750e-76 Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 1 Query: 1 MRGLILVIDDTKSVRTLVGKALDWWGFDIEYATNGLQGLEALKKQQYALVITDLQMPVLDGLECVQRFRAWEWQRQIILATSANCEAADMDLCIDSGADGFLPKPLSLSLL 333 MRGLILVIDDTKSVRTLVGKALDWWGFDIEYATNGLQGLEALKKQQYALVITDLQMPVLDGLECVQRFRAWEWQRQIILATSANCEAADMDLCIDSGADGFLPKPLSLSLL Sbjct: 1 MRGLILVIDDTKSVRTLVGKALDWWGFDIEYATNGLQGLEALKKQQYALVITDLQMPVLDGLECVQRFRAWEWQRQIILATSANCEAADMDLCIDSGADGFLPKPLSLSLL 111
BLAST of jgi.p|Trimin1|176428 vs. uniprot
Match: A0A7S1FVG9_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FVG9_9STRA) HSP 1 Score: 102 bits (254), Expect = 4.680e-23 Identity = 50/111 (45.05%), Postives = 74/111 (66.67%), Query Frame = 1 Query: 16 LVIDDTKSVRTLVGKALDWWGFDIEYATNGLQGLEALKKQQYALVITDLQMPVLDGLECVQRFRAWE-----WQRQIILATSANCEAADMDLCIDSGADGFLPKPLSLSLL 333 +VIDD+ ++R +G+AL GFD+ +A NGL+GL+ALK+ + +V+ D MP++DGL+CVQ++RAWE + RQ I+ SA+ D D + G D FL KP+SL L Sbjct: 606 IVIDDSLTIRKSIGRALSRVGFDVTFACNGLEGLDALKETLFDIVLCDFLMPIMDGLDCVQQYRAWETLHRPYFRQYIVGISAHATETDSDKGLKVGMDKFLSKPISLKTL 716
BLAST of jgi.p|Trimin1|176428 vs. uniprot
Match: A0A7S1DHP0_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DHP0_HEMAN) HSP 1 Score: 100 bits (250), Expect = 1.580e-22 Identity = 51/116 (43.97%), Postives = 75/116 (64.66%), Query Frame = 1 Query: 7 GLILVIDDTKSVRTLVGKALDWWGFDIEYATNGLQGLEALKKQQYALVITDLQMPVLDGLECVQRFRAWEWQR-------QIILATSANCEAADMDLCIDSGADGFLPKPLSLSLL 333 G+IL+I+D S R L+ K L+ G+ + A NG++GLE L++Q++ +V+ D+ MPV+DG+EC +RFR WE Q+ Q I A SAN EA+D+ D G D F PKP+ + L Sbjct: 560 GIILLIEDDVSTRKLMTKGLEKQGYTVVQAGNGVEGLEKLQEQRFNMVLCDIMMPVMDGVECTRRFRQWEKQQSSRSGGAQYICALSANTEASDVAKTRDVGMDDFFPKPVKIQEL 675
BLAST of jgi.p|Trimin1|176428 vs. uniprot
Match: A0A7S0Z3C2_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0Z3C2_9CRYP) HSP 1 Score: 95.5 bits (236), Expect = 1.200e-20 Identity = 47/117 (40.17%), Postives = 74/117 (63.25%), Query Frame = 1 Query: 4 RGLILVIDDTKSVRTLVGKALDWWGFDIEYATNGLQGLEALKKQQYALVITDLQMPVLDGLECVQRFRAWEWQR-------QIILATSANCEAADMDLCIDSGADGFLPKPLSLSLL 333 +G +L+I+D R L+ KAL+ F + A NG +GLE LK+ +Y++V+ D+ MPV+DG+EC++RFR WE + Q + A SAN EA+D++ + G + F PKP+ + L Sbjct: 478 KGTVLLIEDDVPTRRLMTKALEKQKFSVVQAGNGEEGLEKLKESRYSMVLCDIMMPVMDGVECIRRFRQWEQGQASREGGEQFVCALSANTEASDVEKTRNVGMNDFFPKPVKIKEL 594
BLAST of jgi.p|Trimin1|176428 vs. uniprot
Match: B7G5E0_PHATC (Diatom response regulator 3 (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G5E0_PHATC) HSP 1 Score: 94.4 bits (233), Expect = 1.760e-20 Identity = 48/110 (43.64%), Postives = 70/110 (63.64%), Query Frame = 1 Query: 16 LVIDDTKSVRTLVGKALDWWGFDIEYATNGLQGLEALKKQQYALVITDLQMPVLDGLECVQRFRAWEWQ----RQIILATSANCEAADMDLCIDSGADGFLPKPLSLSLL 333 LVIDD+K VR ++ AL GF+ A NGL+GL AL++ Y LV+ DL MPV+DGL+CV+ +R WE +Q I+A SA+ D++ C+ G D + KP+++ L Sbjct: 120 LVIDDSKVVRKILANALSRLGFETMLAVNGLEGLRALQESTYDLVLCDLLMPVMDGLDCVRSYRHWESNNRSTQQHIVAMSAHASEVDIERCLKLGMDCYYSKPITMETL 229
BLAST of jgi.p|Trimin1|176428 vs. uniprot
Match: A0A836CJU7_9STRA (CheY-like superfamily protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJU7_9STRA) HSP 1 Score: 88.2 bits (217), Expect = 2.020e-20 Identity = 51/113 (45.13%), Postives = 69/113 (61.06%), Query Frame = 1 Query: 16 LVIDDTKSVRTLVGKALDWWGFDIEYATNGLQGLEALKKQQYALVITDLQMPVLDGLECVQRFRAWEW------QRQIILATSANCEAADMDLCIDSGA-DGFLPKPLSLSLL 333 LVIDDT SVR L+ K L+ G + A NGL+GL+ ++ ++Y++V+ D MPV+ G+EC+QRFR WE RQ I+ S+ E D D SGA D FL KP+ L L Sbjct: 2 LVIDDTGSVRKLLCKVLESKGLRCDVARNGLEGLQTMRTRRYSVVLCDAFMPVMSGMECIQRFRQWEGVHRAEQPRQFIVGISSYLEGFDRD----SGAIDAFLSKPIDLKWL 110
BLAST of jgi.p|Trimin1|176428 vs. uniprot
Match: A0A6H5JFN7_9PHAE (Response regulatory domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFN7_9PHAE) HSP 1 Score: 88.6 bits (218), Expect = 7.580e-20 Identity = 48/109 (44.04%), Postives = 67/109 (61.47%), Query Frame = 1 Query: 4 RGLILVIDDTKSVRTLVGKALDWWGFDIEYATNGLQGLEALKKQQYALVITDLQMPVLDGLECVQRFRAWEW----QRQIILATSANCEAADMDLCIDSGADGFLPKPL 318 RG L++DDT S+R ++ L D++ A NG++GLE LK ++Y +V+ D+ MPV+DG EC+ RFR WE RQ I A SAN +D+G DG LPKP+ Sbjct: 55 RGTCLIVDDTASIRKMMRHFLKQ--HDVDLACNGVEGLERLKNKEYDIVLMDISMPVMDGRECLARFRKWEAVNRPNRQRIYAMSANVVE------VDTGFDGSLPKPM 155
BLAST of jgi.p|Trimin1|176428 vs. uniprot
Match: B7FUD4_PHATC (Light histidine kinase n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FUD4_PHATC) HSP 1 Score: 91.7 bits (226), Expect = 2.800e-19 Identity = 43/111 (38.74%), Postives = 73/111 (65.77%), Query Frame = 1 Query: 16 LVIDDTKSVRTLVGKALDWWGFDIEYATNGLQGLEALKKQQYALVITDLQMPVLDGLECVQRFRAWEWQ-----RQIILATSANCEAADMDLCIDSGADGFLPKPLSLSLL 333 LVIDD+ VR + + L G+++E A++G++GL ALKK+ Y++ + D MP++DGL+CVQ++R WE + RQII+ SA+ D ++ G D ++ KP+++ +L Sbjct: 534 LVIDDSLVVRKTLVRGLSSLGYEVETASDGMEGLNALKKRIYSVCLCDFLMPIMDGLDCVQQYRVWEAEYRFSHRQIIVGISAHATKKDSNIARQIGMDDYMAKPITIKML 644
BLAST of jgi.p|Trimin1|176428 vs. uniprot
Match: L1JXG5_GUITC (Uncharacterized protein n=2 Tax=Geminigeraceae TaxID=589343 RepID=L1JXG5_GUITC) HSP 1 Score: 90.9 bits (224), Expect = 5.030e-19 Identity = 43/111 (38.74%), Postives = 70/111 (63.06%), Query Frame = 1 Query: 13 ILVIDDTKSVRTLVGKALDWWGFDIEYATNGLQGLEALKKQQYALVITDLQMPVLDGLECVQRFRAWEWQR----QIILATSANCEAADMDLCIDSGADGFLPKPLSLSLL 333 +LV++D RTL+ L G+ + A NG +GLE ++++ + +V+ D+ MPV+DG+ECV+R RAWE + Q I A SAN + +D++ C+ +G F PKP+ + L Sbjct: 481 VLVVEDDVPTRTLMVHGLKRKGYVVHQAGNGEEGLEQMQRRMFHMVLCDIMMPVMDGVECVKRLRAWESTQSRTSQFICALSANTDVSDVNKCMGAGMSDFFPKPVKIPAL 591
BLAST of jgi.p|Trimin1|176428 vs. uniprot
Match: A0A6H5K5F2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5F2_9PHAE) HSP 1 Score: 88.6 bits (218), Expect = 2.090e-18 Identity = 48/109 (44.04%), Postives = 67/109 (61.47%), Query Frame = 1 Query: 4 RGLILVIDDTKSVRTLVGKALDWWGFDIEYATNGLQGLEALKKQQYALVITDLQMPVLDGLECVQRFRAWEW----QRQIILATSANCEAADMDLCIDSGADGFLPKPL 318 RG L++DDT S+R ++ L D++ A NG++GLE LK ++Y +V+ D+ MPV+DG EC+ RFR WE RQ I A SAN +D+G DG LPKP+ Sbjct: 270 RGTCLIVDDTASIRKMMRHFLKQ--HDVDLACNGVEGLERLKNKEYDIVLMDISMPVMDGRECLARFRKWEAVNRPNRQRIYAMSANVVE------VDTGFDGSLPKPM 370 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|176428 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_13828 ID=mRNA_13828|Name=jgi.p|Trimin1|176428|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=333bp|location=Sequence derived from alignment at Contig_137:356539..357653+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGCGCGGTCTCATTCTGGTTATCGACGACACCAAGTCGGTGCGCACGCTback to top protein sequence of jgi.p|Trimin1|176428 >Trimin1|176428|e_gw1.137.113.1 ID=Trimin1|176428|e_gw1.137.113.1|Name=jgi.p|Trimin1|176428|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=111bp MRGLILVIDDTKSVRTLVGKALDWWGFDIEYATNGLQGLEALKKQQYALVback to top mRNA from alignment at Contig_137:356539..357653+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_13828 ID=mRNA_13828|Name=jgi.p|Trimin1|176428|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1115bp|location=Sequence derived from alignment at Contig_137:356539..357653+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_137:356539..357653+ >mRNA_13828 ID=mRNA_13828|Name=jgi.p|Trimin1|176428|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=333bp|location=Sequence derived from alignment at Contig_137:356539..357653+ (Tribonema minus UTEX_B_3156 )back to top |