mRNA_13824 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|352946 vs. uniprot
Match: A0A835ZBB3_9STRA (Ubiquitinyl hydrolase 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBB3_9STRA) HSP 1 Score: 555 bits (1430), Expect = 5.510e-199 Identity = 287/287 (100.00%), Postives = 287/287 (100.00%), Query Frame = 1 Query: 82 MESSERDQEEATSESAKKLQEYEATVAQQNAIQEEIKKAQPLVGKAVSPSALSPEYTDNVKPGFLKGIEYLSKRYARLRPVRGDGNCFYRALTFALLENLVLKLRSGDAAAAQAAKAEAQRLVDKGKPMKESCQTLLSLGYEEVSFDMFSAELLEALEGIETTTPESLEAKFNEDGGSGEYIMWFCRLLTSAFIKSHPSRFESFLIGDTVDTFCAREVEPLGVECEQLQIIALCEQLDIGVRIEYLNGEDFDASKGLDAVPVNMDGRQEAAAELLFRPGHYDILYTA 942 MESSERDQEEATSESAKKLQEYEATVAQQNAIQEEIKKAQPLVGKAVSPSALSPEYTDNVKPGFLKGIEYLSKRYARLRPVRGDGNCFYRALTFALLENLVLKLRSGDAAAAQAAKAEAQRLVDKGKPMKESCQTLLSLGYEEVSFDMFSAELLEALEGIETTTPESLEAKFNEDGGSGEYIMWFCRLLTSAFIKSHPSRFESFLIGDTVDTFCAREVEPLGVECEQLQIIALCEQLDIGVRIEYLNGEDFDASKGLDAVPVNMDGRQEAAAELLFRPGHYDILYTA Sbjct: 1 MESSERDQEEATSESAKKLQEYEATVAQQNAIQEEIKKAQPLVGKAVSPSALSPEYTDNVKPGFLKGIEYLSKRYARLRPVRGDGNCFYRALTFALLENLVLKLRSGDAAAAQAAKAEAQRLVDKGKPMKESCQTLLSLGYEEVSFDMFSAELLEALEGIETTTPESLEAKFNEDGGSGEYIMWFCRLLTSAFIKSHPSRFESFLIGDTVDTFCAREVEPLGVECEQLQIIALCEQLDIGVRIEYLNGEDFDASKGLDAVPVNMDGRQEAAAELLFRPGHYDILYTA 287
BLAST of jgi.p|Trimin1|352946 vs. uniprot
Match: A0A6H5KZR8_9PHAE (Ubiquitinyl hydrolase 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KZR8_9PHAE) HSP 1 Score: 219 bits (557), Expect = 2.770e-66 Identity = 129/266 (48.50%), Postives = 161/266 (60.53%), Query Frame = 1 Query: 148 EATVAQQNAIQEEIKKAQPLVGKAVSPSALSPEYTDNVKPGFLKGIEYLSKRYARLRPVRGDGNCFYRALTFALLENLVLKLRS-GDAAAAQAAKAEAQRLVDKGKPMKESCQTLLSLGYEEVSFDMFSAELLEALEGIETTTPESLEAKFNEDGGSGEYIMWFCRLLTSAFIKSHPSRFESFLIGDTVDT--FCAREVEPLGVECEQLQIIALCEQLDIGVRIEYLNGEDFDASKGLDAVPVNMDGRQEAAAELLFRPGHYDILY 936 E TV QQNAI IK QP VG AL PEY N KPGF KG++ L KRY+ LR VRGDGNCFYR+ F LE L+ ++ GDA A E RL + + +S L++LGYEEV+ D F L+ L+ + LE F E+ G EYI+W+CR+LTS F+K + RF FL TVD FC REVEP+G ECEQ+QI+ LCE L+ V+IEYL+G+DF G +P D EA LL+RPGHYD+LY Sbjct: 37 EQTVEQQNAINATIKATQPKVGAKEEVDALLPEYEGNPKPGFRKGVQDLGKRYSALRRVRGDGNCFYRSFLFGYLERLLQGIKGVGDANTK--AMLELSRL---RQVVHDSKAALIALGYEEVALDDFWQTFLQELDALPNMEMGQLEINFREEAGPCEYIVWYCRMLTSGFLKLNADRFLPFL-EHTVDMQDFCQREVEPMGKECEQIQIMGLCEHLNTPVKIEYLDGQDFSGQLGSITLP---DTGAEAMVTLLYRPGHYDVLY 293
BLAST of jgi.p|Trimin1|352946 vs. uniprot
Match: W7TH65_9STRA (Ubiquitinyl hydrolase 1 n=4 Tax=Monodopsidaceae TaxID=425072 RepID=W7TH65_9STRA) HSP 1 Score: 198 bits (504), Expect = 4.160e-58 Identity = 118/277 (42.60%), Postives = 158/277 (57.04%), Query Frame = 1 Query: 154 TVAQQNAIQEEIKKAQPLVGKAVSPSALSPEYTDNVKPGFLKGIEYLSKRYARLRPVRGDGNCFYRALTFALLENLVL-----------KLRSGDAAAAQAAKAEAQRLVDKGKPMKESCQTLLSLGYEEVSFDMFSAELLEALEGIETTTPESLEAKFNEDGGSGEYIMWFCRLLTSAFIKSHPSRFESFLIGD--TVDTFCAREVEPLGVECEQLQIIALCEQLDIGVRIEYLNGEDFDASKGLDA--VPVNMDGRQEAAAE--LLFRPGHYDIL 933 T+AQQ I +I +QPLVG PS L Y DN + GF++G+E L++RYAR+R +R DGNCFYRA FA L LV K G + K E +R + +K+S LL++GYEEV+ D+F +E LE + + LE+ FNE G Y++W+CRLLTS ++K H +E+FL +D FC REVEP G ECEQ+QI+AL L + VRIEYL+G L +P DG +E LL+RPGHYD+L Sbjct: 41 TIAQQEEIDSQIAASQPLVGPLEPPSMLLQAYKDNPEKGFVEGVEDLARRYARMRRIRRDGNCFYRAFLFAYLAGLVEEGIEDGRKGEEKEGGGGKGRKRGRKKEWERF---SQTVKDSKAWLLTVGYEEVAIDIFWEVFVEELEALPHKSLSDLESTFNEPHGVASYMVWYCRLLTSGYLKKHKEEYEAFLDASYRDMDDFCVREVEPTGKECEQVQIMALVRALGVCVRIEYLDGRALPPGGQLPCHVLPDEWDGGKEEGVPVTLLYRPGHYDLL 314
BLAST of jgi.p|Trimin1|352946 vs. uniprot
Match: A0A7S3H413_9STRA (Ubiquitinyl hydrolase 1 n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H413_9STRA) HSP 1 Score: 195 bits (495), Expect = 3.480e-57 Identity = 120/278 (43.17%), Postives = 165/278 (59.35%), Query Frame = 1 Query: 148 EATVAQQNAIQEEIKKAQPLVGKAVSP-SALSPEYTDNV-KPGFLKGIEYLSKRYARLRPVRGDGNCFYRALTFALLENLVLKLRSGDAAAAQAAKAEAQRLVDKGKPMKESCQTLLSLGYEEVSFDMFSAELLEALEGIETTTPESLEAKFNEDGGSGEYIMWFCRLLTSAFIKSHPSRFESFLIGDTVD----TFCAREVEPLGVECEQLQIIALCEQLDIGVRIEYLNGEDFDASKGLDAV--PVNMDGRQEAA------AELLFRPGHYDILYT 939 EAT+ Q I + I +QPL+ + S AL EY +N PGFL G+ YL K+YAR+R VRGDGNCFYRA FA LENL ++L +GDAA E R++ K +++S L+++GY E + + F L+ + + +P +L F E GG +Y W+ RLLT+ +++ H RF FL D +D ++CAREVEP+G ECEQL IIAL E L + V IEYL+G +F+A+ GL + P +G LL+RPGHYDILY Sbjct: 13 EATLEQMKDISQSIIDSQPLIADSSSILGALQEEYQNNTDSPGFLPGLAYLDKKYARIRRVRGDGNCFYRAALFAYLENLTMQLSTGDAAGP----VEYDRIL---KIIQQSKDDLVNVGYSEFAVEDFHETFLDFFLRVPSLSPAALFEHFTE-GGEADYYTWYMRLLTAGYLRQHGDRFFPFL-ADGMDLDMTSYCAREVEPMGKECEQLHIIALTEYLGLKVSIEYLDGREFNAASGLSCIQFPQLDEGVPHTTPLCSFTVNLLYRPGHYDILYN 281
BLAST of jgi.p|Trimin1|352946 vs. uniprot
Match: A0A7S2SU36_9STRA (Ubiquitinyl hydrolase 1 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SU36_9STRA) HSP 1 Score: 190 bits (482), Expect = 3.990e-55 Identity = 109/254 (42.91%), Postives = 150/254 (59.06%), Query Frame = 1 Query: 208 VGKAVSPSALSPEYTDNVKPGFLKGIEYLSKRYARLRPVRGDGNCFYRALTFALLENLVLKLRSGDAAAAQAAKAEAQRLVDKGKPMKESCQTLLSLGYEEVSFDMFSAELLEALEGIETTTPESLEAKFNEDGGSGEYIMWFCRLLTSAFIKSHPSRFESFLIG--DTVDT-------FCAREVEPLGVECEQLQIIALCEQLDIGVRIEYLNGEDFDASKGLDAVPVNMDGRQEAAAELLFRPGHYDILYTA 942 VG L+ EY N +PGFL GIEYL+ RY+ LR VRGDGNCFYR F LE L+ R D A A + E +R + + K+ L+S+GY+E++ + F L+EALE + +T +LE +F E+ G EY++W+CR + + ++K +P F F++ D T +C REVEP+G ECE +QI+ALCE + IGV IEYL+G D +G + P DG LL+RPGHYDILY A Sbjct: 18 VGVPEPVQGLAGEYAGNPRPGFLPGIEYLASRYSALRRVRGDGNCFYRCFLFGYLEQLI---RQRDTAVEDAER-ERKRALQAARQSKDD---LVSVGYDEMAIETFWEVLVEALETLPSTDLATLEKQFQEENGDAEYMVWYCRAIAAGYMKRNPDTFLPFILALDDAAGTAVVDINEYCRREVEPMGRECEAVQIMALCEAMQIGVAIEYLDGALLD--QGRLSCPTFPDGAAPQLT-LLYRPGHYDILYPA 261
BLAST of jgi.p|Trimin1|352946 vs. uniprot
Match: A0A7S1ADL7_NOCSC (Ubiquitinyl hydrolase 1 n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1ADL7_NOCSC) HSP 1 Score: 186 bits (471), Expect = 1.210e-53 Identity = 112/260 (43.08%), Postives = 157/260 (60.38%), Query Frame = 1 Query: 193 KAQPLVGKAVSPSALSPEYTDNVKPGFLKGIEYLSKRYARLRPVRGDGNCFYRALTFALLENLVLKLRSGDAAAAQAAKA---------EAQRLVDKGKPMKESCQTLLSLGYEEVSFDMFSAELLEALEGIETTTPESLEAKFNEDGGSGEYIMWFCRLLTSAFIKSHPSRFESFLIGDT---VDTFCAREVEPLGVECEQLQIIALCEQLDIGVRIEYLNGEDFDASKGLDAVPVNMDGRQEAAAELLFRPGHYDILY 936 + Q L+G SP+ L Y DN F GI L+ RY+ +R VRGDGNCFYR+ F LE L+ + R +AA A A E QR+V + ++ S L+++GY+E + D+F E++E +E + T TPES+ +FNE+ G EY++W+CR L++ F+K+ P RF F++G + +FCA EVEP+ ECEQ+QIIAL E L +GVRIEYL+G S G + V DG LL+RPGHYD+LY Sbjct: 27 RTQALIGIKESPNVLDAVYQDNPLE-FRAGIADLTARYS-MRRVRGDGNCFYRSFLFGYLEQLLSQQRQHEAALAAQESAPEGEDAWCPELQRVVAR---LRGSKLDLVAVGYQESAIDVFWGEIVEFVEALPTHTPESILEQFNEENGGAEYMVWYCRALSAGFLKADPERFMPFILGANYGDIASFCAAEVEPMYKECEQVQIIALSEYLGVGVRIEYLDGR----SNGGASTHVFPDGVHPQLT-LLYRPGHYDLLY 276
BLAST of jgi.p|Trimin1|352946 vs. uniprot
Match: A0A8K1CBZ9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CBZ9_PYTOL) HSP 1 Score: 184 bits (468), Expect = 2.480e-53 Identity = 110/259 (42.47%), Postives = 153/259 (59.07%), Query Frame = 1 Query: 181 EEIKKAQPLVGKAVSPSALSPEYTDNVKPGFLKGIEYLSKRYARLRPVRGDGNCFYRALTFALLENLVLKLRSGDAAAAQAAKAEAQRLVDKGKPMKESCQTLLSLGYEEVSFDMFSAELLEALEGIETTTPESLEAKFNEDGGSGEYIMWFCRLLTSAFIKSHPSRFESFLIGD----TVDTFCAREVEPLGVECEQLQIIALCEQLDIGVRIEYLNGEDFDASKGLDAV--PVNMDGRQEAA-AELLFRPGHYDILY 936 E + K PL+ S L EY N P FL GIE L+K Y +R VRGDGNCF+RA FAL E L+ D AAA A + R++DK +++S L+++GY EV+ D F ++ LE +ET T + L F +GG EY++W+ RLLT+ +K H +F+ F+ G TV+ FCA EVEP+G EC+Q QI AL E L + V+IEYL+G A + L + N +G +++ +L+RPGHYDILY Sbjct: 13 ESLGKDGPLISDPTSVLLLKAEYLGNANPNFLHGIEALNKHYEGMRRVRGDGNCFFRAFIFALCEQLLTNKE--DVAAATALRL---RILDK---IRQSKAELIAIGYSEVAIDAFWETFVDYLEAMETRTHDELVQDFQTEGGECEYLVWYARLLTAGHLKRHAEQFQPFIEGLFPGLTVEQFCAAEVEPMGKECDQPQITALTEALQVRVKIEYLDGSTT-AEQDLQSYICGTNAEGSEDSINIHVLYRPGHYDILY 262
BLAST of jgi.p|Trimin1|352946 vs. uniprot
Match: M4C1S8_HYAAE (Ubiquitinyl hydrolase 1 n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C1S8_HYAAE) HSP 1 Score: 179 bits (455), Expect = 2.440e-51 Identity = 104/254 (40.94%), Postives = 145/254 (57.09%), Query Frame = 1 Query: 196 AQPLVGKAVSPSALSPEYTDNVKPGFLKGIEYLSKRYARLRPVRGDGNCFYRALTFALLENLVLKLRSGDAAAAQAAKAEAQRLVDKGKPMKESCQTLLSLGYEEVSFDMFSAELLEALEGIETTTPESLEAKFNEDGGSGEYIMWFCRLLTSAFIKSHPSRFESFLIG----DTVDTFCAREVEPLGVECEQLQIIALCEQLDIGVRIEYLNGEDFDASKGLDAVPVNMDGRQEAAA---ELLFRPGHYDILY 936 A PL+ +S L PEY NV F+ GIE L RY LR VRGDGNCF+R+ F L E+L+ + D+ AA R+ DK +++S L+++GY +V+ D F ++ L +ET + L F +GG EY++W+ RLLT+ ++K + RF+ F+ G TV FCA EVEP+G EC+Q QI AL E L++GV+IEYL+G V +D + A LL+RPGHYDILY Sbjct: 14 ASPLLSDRMSVLCLKPEYVGNVNGNFMHGIESLDTRYGALRRVRGDGNCFFRSFIFTLCEHLLPSQGAEDSNAALRC-----RIQDK---IQKSKSELVAIGYSDVAIDAFWETFVDYLAAMETRSYAELVQDFQTEGGEAEYLVWYMRLLTAGYMKKNAERFQPFIDGPYPGQTVAQFCATEVEPMGKECDQPQIAALTEALEVGVKIEYLDGSAGAGEPLQSYVCSTVDATERQAPVFITLLYRPGHYDILY 259
BLAST of jgi.p|Trimin1|352946 vs. uniprot
Match: A0A6A3F9B4_9STRA (Ubiquitinyl hydrolase 1 n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3F9B4_9STRA) HSP 1 Score: 175 bits (443), Expect = 1.210e-49 Identity = 99/254 (38.98%), Postives = 139/254 (54.72%), Query Frame = 1 Query: 202 PLVGKAVSPSALSPEYTDNVKPGFLKGIEYLSKRYARLRPVRGDGNCFYRALTFALLENLVLKLRSGDAAAAQAAKAEAQRLVDKGKPMKESCQTLLSLGYEEVSFDMFSAELLEALEGIETTTPESLEAKFNEDGGSGEYIMWFCRLLTSAFIKSHPSRFESFLIG----DTVDTFCAREVEPLGVECEQLQIIALCEQLDIGVRIEYLNGEDFDASKGLDAV----PVNMDGRQEAAAELLFRPGHYDILYT 939 PL+ +SP L EY N F+ GIE L+ RY LR VRGDGNCF+R FAL E L+ + D AA + + + +++S LL++GY +V+ D F ++ L +ET + L F +GG EY++W+ RLLT+ ++K H F+ F+ G TV FCA EVEP+G EC+Q QI AL E L +GV+IEYL+G + V ++ + LL+RPGHYDILY Sbjct: 13 PLLTDRMSPLCLKAEYVGNANANFMHGIESLNARYEALRRVRGDGNCFFRGFIFALCERLLPTAGAEDGNAALRGRMQHK--------IQQSKSELLAVGYSDVAIDAFWETFVDYLAAMETRSHAELVQDFQTEGGGSEYLVWYMRLLTAGYMKQHAETFQPFIDGLCPGQTVAQFCAAEVEPMGKECDQPQIAALTEALQVGVKIEYLDGSAGPGQELQSYVCSPTVAEQQEQEPVSITLLYRPGHYDILYA 258
BLAST of jgi.p|Trimin1|352946 vs. uniprot
Match: W2QGG4_PHYPN (Ubiquitinyl hydrolase 1 n=8 Tax=Phytophthora TaxID=4783 RepID=W2QGG4_PHYPN) HSP 1 Score: 175 bits (443), Expect = 1.600e-49 Identity = 103/253 (40.71%), Postives = 143/253 (56.52%), Query Frame = 1 Query: 202 PLVGKAVSPSALSPEYTDNVKPGFLKGIEYLSKRYARLRPVRGDGNCFYRALTFALLENLVLKLRSGDAAAAQAAKAEAQRLVDKGKPMKESCQTLLSLGYEEVSFDMFSAELLEALEGIETTTPESLEAKFNEDGGSGEYIMWFCRLLTSAFIKSHPSRFESFLIG----DTVDTFCAREVEPLGVECEQLQIIALCEQLDIGVRIEYLNGE---DFDASKGLDAVPVNMDGRQEAAA-ELLFRPGHYDILY 936 PL+ +S L EY N P F+ GI+ L+ RY LR VRGDGNCF+R FAL E L L +G A + A R+ DK ++ S L+++GY +V+ D F ++ L +ET + L F +GG EY++W+ RLLT+ ++K + F+ F+ G TV FCA EVEP+G EC+Q QI AL E L +GV+IEYL+G D + + V +QE + LL+RPGHYDILY Sbjct: 17 PLLSDRMSVLCLKAEYVGNANPNFMHGIDSLNARYEALRRVRGDGNCFFRGFIFALCEQL---LPTGGAGGEDSNAALRSRIQDK---IQMSKSELVAIGYSDVAIDAFWETFVDYLAAMETRSHAELVQDFQTEGGESEYLVWYMRLLTAGYMKKNAETFQPFIDGLYPGQTVAQFCAAEVEPMGKECDQPQIAALTEALQVGVKIEYLDGSAGPGEDLQSYVCSPTVEATTQQEPVSITLLYRPGHYDILY 263 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352946 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_13824 ID=mRNA_13824|Name=jgi.p|Trimin1|352946|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=945bp|location=Sequence derived from alignment at Contig_137:327503..330862- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GCCTTCTTGGGAGCTGCTTCAGATACCCCTGCTTGTTCTTGGTCCGCGCTback to top protein sequence of jgi.p|Trimin1|352946 >Trimin1|352946|estExt_Genemark1.C_Ctg_1370043 ID=Trimin1|352946|estExt_Genemark1.C_Ctg_1370043|Name=jgi.p|Trimin1|352946|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=288bp MESSERDQEEATSESAKKLQEYEATVAQQNAIQEEIKKAQPLVGKAVSPSback to top mRNA from alignment at Contig_137:327503..330862- Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_13824 ID=mRNA_13824|Name=jgi.p|Trimin1|352946|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3360bp|location=Sequence derived from alignment at Contig_137:327503..330862- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_137:327503..330862- >mRNA_13824 ID=mRNA_13824|Name=jgi.p|Trimin1|352946|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=864bp|location=Sequence derived from alignment at Contig_137:327503..330862- (Tribonema minus UTEX_B_3156 )back to top |