mRNA_13824 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|352946
Unique NamemRNA_13824
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|352946 vs. uniprot
Match: A0A835ZBB3_9STRA (Ubiquitinyl hydrolase 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBB3_9STRA)

HSP 1 Score: 555 bits (1430), Expect = 5.510e-199
Identity = 287/287 (100.00%), Postives = 287/287 (100.00%), Query Frame = 1
Query:   82 MESSERDQEEATSESAKKLQEYEATVAQQNAIQEEIKKAQPLVGKAVSPSALSPEYTDNVKPGFLKGIEYLSKRYARLRPVRGDGNCFYRALTFALLENLVLKLRSGDAAAAQAAKAEAQRLVDKGKPMKESCQTLLSLGYEEVSFDMFSAELLEALEGIETTTPESLEAKFNEDGGSGEYIMWFCRLLTSAFIKSHPSRFESFLIGDTVDTFCAREVEPLGVECEQLQIIALCEQLDIGVRIEYLNGEDFDASKGLDAVPVNMDGRQEAAAELLFRPGHYDILYTA 942
            MESSERDQEEATSESAKKLQEYEATVAQQNAIQEEIKKAQPLVGKAVSPSALSPEYTDNVKPGFLKGIEYLSKRYARLRPVRGDGNCFYRALTFALLENLVLKLRSGDAAAAQAAKAEAQRLVDKGKPMKESCQTLLSLGYEEVSFDMFSAELLEALEGIETTTPESLEAKFNEDGGSGEYIMWFCRLLTSAFIKSHPSRFESFLIGDTVDTFCAREVEPLGVECEQLQIIALCEQLDIGVRIEYLNGEDFDASKGLDAVPVNMDGRQEAAAELLFRPGHYDILYTA
Sbjct:    1 MESSERDQEEATSESAKKLQEYEATVAQQNAIQEEIKKAQPLVGKAVSPSALSPEYTDNVKPGFLKGIEYLSKRYARLRPVRGDGNCFYRALTFALLENLVLKLRSGDAAAAQAAKAEAQRLVDKGKPMKESCQTLLSLGYEEVSFDMFSAELLEALEGIETTTPESLEAKFNEDGGSGEYIMWFCRLLTSAFIKSHPSRFESFLIGDTVDTFCAREVEPLGVECEQLQIIALCEQLDIGVRIEYLNGEDFDASKGLDAVPVNMDGRQEAAAELLFRPGHYDILYTA 287          
BLAST of jgi.p|Trimin1|352946 vs. uniprot
Match: A0A6H5KZR8_9PHAE (Ubiquitinyl hydrolase 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KZR8_9PHAE)

HSP 1 Score: 219 bits (557), Expect = 2.770e-66
Identity = 129/266 (48.50%), Postives = 161/266 (60.53%), Query Frame = 1
Query:  148 EATVAQQNAIQEEIKKAQPLVGKAVSPSALSPEYTDNVKPGFLKGIEYLSKRYARLRPVRGDGNCFYRALTFALLENLVLKLRS-GDAAAAQAAKAEAQRLVDKGKPMKESCQTLLSLGYEEVSFDMFSAELLEALEGIETTTPESLEAKFNEDGGSGEYIMWFCRLLTSAFIKSHPSRFESFLIGDTVDT--FCAREVEPLGVECEQLQIIALCEQLDIGVRIEYLNGEDFDASKGLDAVPVNMDGRQEAAAELLFRPGHYDILY 936
            E TV QQNAI   IK  QP VG      AL PEY  N KPGF KG++ L KRY+ LR VRGDGNCFYR+  F  LE L+  ++  GDA     A  E  RL    + + +S   L++LGYEEV+ D F    L+ L+ +       LE  F E+ G  EYI+W+CR+LTS F+K +  RF  FL   TVD   FC REVEP+G ECEQ+QI+ LCE L+  V+IEYL+G+DF    G   +P   D   EA   LL+RPGHYD+LY
Sbjct:   37 EQTVEQQNAINATIKATQPKVGAKEEVDALLPEYEGNPKPGFRKGVQDLGKRYSALRRVRGDGNCFYRSFLFGYLERLLQGIKGVGDANTK--AMLELSRL---RQVVHDSKAALIALGYEEVALDDFWQTFLQELDALPNMEMGQLEINFREEAGPCEYIVWYCRMLTSGFLKLNADRFLPFL-EHTVDMQDFCQREVEPMGKECEQIQIMGLCEHLNTPVKIEYLDGQDFSGQLGSITLP---DTGAEAMVTLLYRPGHYDVLY 293          
BLAST of jgi.p|Trimin1|352946 vs. uniprot
Match: W7TH65_9STRA (Ubiquitinyl hydrolase 1 n=4 Tax=Monodopsidaceae TaxID=425072 RepID=W7TH65_9STRA)

HSP 1 Score: 198 bits (504), Expect = 4.160e-58
Identity = 118/277 (42.60%), Postives = 158/277 (57.04%), Query Frame = 1
Query:  154 TVAQQNAIQEEIKKAQPLVGKAVSPSALSPEYTDNVKPGFLKGIEYLSKRYARLRPVRGDGNCFYRALTFALLENLVL-----------KLRSGDAAAAQAAKAEAQRLVDKGKPMKESCQTLLSLGYEEVSFDMFSAELLEALEGIETTTPESLEAKFNEDGGSGEYIMWFCRLLTSAFIKSHPSRFESFLIGD--TVDTFCAREVEPLGVECEQLQIIALCEQLDIGVRIEYLNGEDFDASKGLDA--VPVNMDGRQEAAAE--LLFRPGHYDIL 933
            T+AQQ  I  +I  +QPLVG    PS L   Y DN + GF++G+E L++RYAR+R +R DGNCFYRA  FA L  LV            K   G     +  K E +R     + +K+S   LL++GYEEV+ D+F    +E LE +   +   LE+ FNE  G   Y++W+CRLLTS ++K H   +E+FL      +D FC REVEP G ECEQ+QI+AL   L + VRIEYL+G        L    +P   DG +E      LL+RPGHYD+L
Sbjct:   41 TIAQQEEIDSQIAASQPLVGPLEPPSMLLQAYKDNPEKGFVEGVEDLARRYARMRRIRRDGNCFYRAFLFAYLAGLVEEGIEDGRKGEEKEGGGGKGRKRGRKKEWERF---SQTVKDSKAWLLTVGYEEVAIDIFWEVFVEELEALPHKSLSDLESTFNEPHGVASYMVWYCRLLTSGYLKKHKEEYEAFLDASYRDMDDFCVREVEPTGKECEQVQIMALVRALGVCVRIEYLDGRALPPGGQLPCHVLPDEWDGGKEEGVPVTLLYRPGHYDLL 314          
BLAST of jgi.p|Trimin1|352946 vs. uniprot
Match: A0A7S3H413_9STRA (Ubiquitinyl hydrolase 1 n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H413_9STRA)

HSP 1 Score: 195 bits (495), Expect = 3.480e-57
Identity = 120/278 (43.17%), Postives = 165/278 (59.35%), Query Frame = 1
Query:  148 EATVAQQNAIQEEIKKAQPLVGKAVSP-SALSPEYTDNV-KPGFLKGIEYLSKRYARLRPVRGDGNCFYRALTFALLENLVLKLRSGDAAAAQAAKAEAQRLVDKGKPMKESCQTLLSLGYEEVSFDMFSAELLEALEGIETTTPESLEAKFNEDGGSGEYIMWFCRLLTSAFIKSHPSRFESFLIGDTVD----TFCAREVEPLGVECEQLQIIALCEQLDIGVRIEYLNGEDFDASKGLDAV--PVNMDGRQEAA------AELLFRPGHYDILYT 939
            EAT+ Q   I + I  +QPL+  + S   AL  EY +N   PGFL G+ YL K+YAR+R VRGDGNCFYRA  FA LENL ++L +GDAA       E  R++   K +++S   L+++GY E + + F    L+    + + +P +L   F E GG  +Y  W+ RLLT+ +++ H  RF  FL  D +D    ++CAREVEP+G ECEQL IIAL E L + V IEYL+G +F+A+ GL  +  P   +G             LL+RPGHYDILY 
Sbjct:   13 EATLEQMKDISQSIIDSQPLIADSSSILGALQEEYQNNTDSPGFLPGLAYLDKKYARIRRVRGDGNCFYRAALFAYLENLTMQLSTGDAAGP----VEYDRIL---KIIQQSKDDLVNVGYSEFAVEDFHETFLDFFLRVPSLSPAALFEHFTE-GGEADYYTWYMRLLTAGYLRQHGDRFFPFL-ADGMDLDMTSYCAREVEPMGKECEQLHIIALTEYLGLKVSIEYLDGREFNAASGLSCIQFPQLDEGVPHTTPLCSFTVNLLYRPGHYDILYN 281          
BLAST of jgi.p|Trimin1|352946 vs. uniprot
Match: A0A7S2SU36_9STRA (Ubiquitinyl hydrolase 1 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SU36_9STRA)

HSP 1 Score: 190 bits (482), Expect = 3.990e-55
Identity = 109/254 (42.91%), Postives = 150/254 (59.06%), Query Frame = 1
Query:  208 VGKAVSPSALSPEYTDNVKPGFLKGIEYLSKRYARLRPVRGDGNCFYRALTFALLENLVLKLRSGDAAAAQAAKAEAQRLVDKGKPMKESCQTLLSLGYEEVSFDMFSAELLEALEGIETTTPESLEAKFNEDGGSGEYIMWFCRLLTSAFIKSHPSRFESFLIG--DTVDT-------FCAREVEPLGVECEQLQIIALCEQLDIGVRIEYLNGEDFDASKGLDAVPVNMDGRQEAAAELLFRPGHYDILYTA 942
            VG       L+ EY  N +PGFL GIEYL+ RY+ LR VRGDGNCFYR   F  LE L+   R  D A   A + E +R +   +  K+    L+S+GY+E++ + F   L+EALE + +T   +LE +F E+ G  EY++W+CR + + ++K +P  F  F++   D   T       +C REVEP+G ECE +QI+ALCE + IGV IEYL+G   D  +G  + P   DG       LL+RPGHYDILY A
Sbjct:   18 VGVPEPVQGLAGEYAGNPRPGFLPGIEYLASRYSALRRVRGDGNCFYRCFLFGYLEQLI---RQRDTAVEDAER-ERKRALQAARQSKDD---LVSVGYDEMAIETFWEVLVEALETLPSTDLATLEKQFQEENGDAEYMVWYCRAIAAGYMKRNPDTFLPFILALDDAAGTAVVDINEYCRREVEPMGRECEAVQIMALCEAMQIGVAIEYLDGALLD--QGRLSCPTFPDGAAPQLT-LLYRPGHYDILYPA 261          
BLAST of jgi.p|Trimin1|352946 vs. uniprot
Match: A0A7S1ADL7_NOCSC (Ubiquitinyl hydrolase 1 n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1ADL7_NOCSC)

HSP 1 Score: 186 bits (471), Expect = 1.210e-53
Identity = 112/260 (43.08%), Postives = 157/260 (60.38%), Query Frame = 1
Query:  193 KAQPLVGKAVSPSALSPEYTDNVKPGFLKGIEYLSKRYARLRPVRGDGNCFYRALTFALLENLVLKLRSGDAAAAQAAKA---------EAQRLVDKGKPMKESCQTLLSLGYEEVSFDMFSAELLEALEGIETTTPESLEAKFNEDGGSGEYIMWFCRLLTSAFIKSHPSRFESFLIGDT---VDTFCAREVEPLGVECEQLQIIALCEQLDIGVRIEYLNGEDFDASKGLDAVPVNMDGRQEAAAELLFRPGHYDILY 936
            + Q L+G   SP+ L   Y DN    F  GI  L+ RY+ +R VRGDGNCFYR+  F  LE L+ + R  +AA A    A         E QR+V +   ++ S   L+++GY+E + D+F  E++E +E + T TPES+  +FNE+ G  EY++W+CR L++ F+K+ P RF  F++G     + +FCA EVEP+  ECEQ+QIIAL E L +GVRIEYL+G     S G  +  V  DG       LL+RPGHYD+LY
Sbjct:   27 RTQALIGIKESPNVLDAVYQDNPLE-FRAGIADLTARYS-MRRVRGDGNCFYRSFLFGYLEQLLSQQRQHEAALAAQESAPEGEDAWCPELQRVVAR---LRGSKLDLVAVGYQESAIDVFWGEIVEFVEALPTHTPESILEQFNEENGGAEYMVWYCRALSAGFLKADPERFMPFILGANYGDIASFCAAEVEPMYKECEQVQIIALSEYLGVGVRIEYLDGR----SNGGASTHVFPDGVHPQLT-LLYRPGHYDLLY 276          
BLAST of jgi.p|Trimin1|352946 vs. uniprot
Match: A0A8K1CBZ9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CBZ9_PYTOL)

HSP 1 Score: 184 bits (468), Expect = 2.480e-53
Identity = 110/259 (42.47%), Postives = 153/259 (59.07%), Query Frame = 1
Query:  181 EEIKKAQPLVGKAVSPSALSPEYTDNVKPGFLKGIEYLSKRYARLRPVRGDGNCFYRALTFALLENLVLKLRSGDAAAAQAAKAEAQRLVDKGKPMKESCQTLLSLGYEEVSFDMFSAELLEALEGIETTTPESLEAKFNEDGGSGEYIMWFCRLLTSAFIKSHPSRFESFLIGD----TVDTFCAREVEPLGVECEQLQIIALCEQLDIGVRIEYLNGEDFDASKGLDAV--PVNMDGRQEAA-AELLFRPGHYDILY 936
            E + K  PL+    S   L  EY  N  P FL GIE L+K Y  +R VRGDGNCF+RA  FAL E L+      D AAA A +    R++DK   +++S   L+++GY EV+ D F    ++ LE +ET T + L   F  +GG  EY++W+ RLLT+  +K H  +F+ F+ G     TV+ FCA EVEP+G EC+Q QI AL E L + V+IEYL+G    A + L +     N +G +++    +L+RPGHYDILY
Sbjct:   13 ESLGKDGPLISDPTSVLLLKAEYLGNANPNFLHGIEALNKHYEGMRRVRGDGNCFFRAFIFALCEQLLTNKE--DVAAATALRL---RILDK---IRQSKAELIAIGYSEVAIDAFWETFVDYLEAMETRTHDELVQDFQTEGGECEYLVWYARLLTAGHLKRHAEQFQPFIEGLFPGLTVEQFCAAEVEPMGKECDQPQITALTEALQVRVKIEYLDGSTT-AEQDLQSYICGTNAEGSEDSINIHVLYRPGHYDILY 262          
BLAST of jgi.p|Trimin1|352946 vs. uniprot
Match: M4C1S8_HYAAE (Ubiquitinyl hydrolase 1 n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C1S8_HYAAE)

HSP 1 Score: 179 bits (455), Expect = 2.440e-51
Identity = 104/254 (40.94%), Postives = 145/254 (57.09%), Query Frame = 1
Query:  196 AQPLVGKAVSPSALSPEYTDNVKPGFLKGIEYLSKRYARLRPVRGDGNCFYRALTFALLENLVLKLRSGDAAAAQAAKAEAQRLVDKGKPMKESCQTLLSLGYEEVSFDMFSAELLEALEGIETTTPESLEAKFNEDGGSGEYIMWFCRLLTSAFIKSHPSRFESFLIG----DTVDTFCAREVEPLGVECEQLQIIALCEQLDIGVRIEYLNGEDFDASKGLDAVPVNMDGRQEAAA---ELLFRPGHYDILY 936
            A PL+   +S   L PEY  NV   F+ GIE L  RY  LR VRGDGNCF+R+  F L E+L+    + D+ AA        R+ DK   +++S   L+++GY +V+ D F    ++ L  +ET +   L   F  +GG  EY++W+ RLLT+ ++K +  RF+ F+ G     TV  FCA EVEP+G EC+Q QI AL E L++GV+IEYL+G           V   +D  +  A     LL+RPGHYDILY
Sbjct:   14 ASPLLSDRMSVLCLKPEYVGNVNGNFMHGIESLDTRYGALRRVRGDGNCFFRSFIFTLCEHLLPSQGAEDSNAALRC-----RIQDK---IQKSKSELVAIGYSDVAIDAFWETFVDYLAAMETRSYAELVQDFQTEGGEAEYLVWYMRLLTAGYMKKNAERFQPFIDGPYPGQTVAQFCATEVEPMGKECDQPQIAALTEALEVGVKIEYLDGSAGAGEPLQSYVCSTVDATERQAPVFITLLYRPGHYDILY 259          
BLAST of jgi.p|Trimin1|352946 vs. uniprot
Match: A0A6A3F9B4_9STRA (Ubiquitinyl hydrolase 1 n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3F9B4_9STRA)

HSP 1 Score: 175 bits (443), Expect = 1.210e-49
Identity = 99/254 (38.98%), Postives = 139/254 (54.72%), Query Frame = 1
Query:  202 PLVGKAVSPSALSPEYTDNVKPGFLKGIEYLSKRYARLRPVRGDGNCFYRALTFALLENLVLKLRSGDAAAAQAAKAEAQRLVDKGKPMKESCQTLLSLGYEEVSFDMFSAELLEALEGIETTTPESLEAKFNEDGGSGEYIMWFCRLLTSAFIKSHPSRFESFLIG----DTVDTFCAREVEPLGVECEQLQIIALCEQLDIGVRIEYLNGEDFDASKGLDAV----PVNMDGRQEAAAELLFRPGHYDILYT 939
            PL+   +SP  L  EY  N    F+ GIE L+ RY  LR VRGDGNCF+R   FAL E L+    + D  AA   + + +        +++S   LL++GY +V+ D F    ++ L  +ET +   L   F  +GG  EY++W+ RLLT+ ++K H   F+ F+ G     TV  FCA EVEP+G EC+Q QI AL E L +GV+IEYL+G      +    V          ++  +  LL+RPGHYDILY 
Sbjct:   13 PLLTDRMSPLCLKAEYVGNANANFMHGIESLNARYEALRRVRGDGNCFFRGFIFALCERLLPTAGAEDGNAALRGRMQHK--------IQQSKSELLAVGYSDVAIDAFWETFVDYLAAMETRSHAELVQDFQTEGGGSEYLVWYMRLLTAGYMKQHAETFQPFIDGLCPGQTVAQFCAAEVEPMGKECDQPQIAALTEALQVGVKIEYLDGSAGPGQELQSYVCSPTVAEQQEQEPVSITLLYRPGHYDILYA 258          
BLAST of jgi.p|Trimin1|352946 vs. uniprot
Match: W2QGG4_PHYPN (Ubiquitinyl hydrolase 1 n=8 Tax=Phytophthora TaxID=4783 RepID=W2QGG4_PHYPN)

HSP 1 Score: 175 bits (443), Expect = 1.600e-49
Identity = 103/253 (40.71%), Postives = 143/253 (56.52%), Query Frame = 1
Query:  202 PLVGKAVSPSALSPEYTDNVKPGFLKGIEYLSKRYARLRPVRGDGNCFYRALTFALLENLVLKLRSGDAAAAQAAKAEAQRLVDKGKPMKESCQTLLSLGYEEVSFDMFSAELLEALEGIETTTPESLEAKFNEDGGSGEYIMWFCRLLTSAFIKSHPSRFESFLIG----DTVDTFCAREVEPLGVECEQLQIIALCEQLDIGVRIEYLNGE---DFDASKGLDAVPVNMDGRQEAAA-ELLFRPGHYDILY 936
            PL+   +S   L  EY  N  P F+ GI+ L+ RY  LR VRGDGNCF+R   FAL E L   L +G A    +  A   R+ DK   ++ S   L+++GY +V+ D F    ++ L  +ET +   L   F  +GG  EY++W+ RLLT+ ++K +   F+ F+ G     TV  FCA EVEP+G EC+Q QI AL E L +GV+IEYL+G      D    + +  V    +QE  +  LL+RPGHYDILY
Sbjct:   17 PLLSDRMSVLCLKAEYVGNANPNFMHGIDSLNARYEALRRVRGDGNCFFRGFIFALCEQL---LPTGGAGGEDSNAALRSRIQDK---IQMSKSELVAIGYSDVAIDAFWETFVDYLAAMETRSHAELVQDFQTEGGESEYLVWYMRLLTAGYMKKNAETFQPFIDGLYPGQTVAQFCAAEVEPMGKECDQPQIAALTEALQVGVKIEYLDGSAGPGEDLQSYVCSPTVEATTQQEPVSITLLYRPGHYDILY 263          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352946 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZBB3_9STRA5.510e-199100.00Ubiquitinyl hydrolase 1 n=1 Tax=Tribonema minus Ta... [more]
A0A6H5KZR8_9PHAE2.770e-6648.50Ubiquitinyl hydrolase 1 n=2 Tax=Ectocarpus TaxID=2... [more]
W7TH65_9STRA4.160e-5842.60Ubiquitinyl hydrolase 1 n=4 Tax=Monodopsidaceae Ta... [more]
A0A7S3H413_9STRA3.480e-5743.17Ubiquitinyl hydrolase 1 n=1 Tax=Spumella elongata ... [more]
A0A7S2SU36_9STRA3.990e-5542.91Ubiquitinyl hydrolase 1 n=1 Tax=Rhizochromulina ma... [more]
A0A7S1ADL7_NOCSC1.210e-5343.08Ubiquitinyl hydrolase 1 n=1 Tax=Noctiluca scintill... [more]
A0A8K1CBZ9_PYTOL2.480e-5342.47Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
M4C1S8_HYAAE2.440e-5140.94Ubiquitinyl hydrolase 1 n=1 Tax=Hyaloperonospora a... [more]
A0A6A3F9B4_9STRA1.210e-4938.98Ubiquitinyl hydrolase 1 n=3 Tax=Phytophthora TaxID... [more]
W2QGG4_PHYPN1.600e-4940.71Ubiquitinyl hydrolase 1 n=8 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_137contigContig_137:327503..330862 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|352946|estExt_Genemark1.C_Ctg_1370043
BRITEko00000,ko01000,ko01002,ko04121
KEGG koko:K09602,ko:K09603
EC3.4.19.12
GOsGO:0003674,GO:0003824,GO:0004843,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006282,GO:0006464,GO:0006508,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009892,GO:0009987,GO:0010033,GO:0010605,GO:0010639,GO:0016579,GO:0016787,GO:0019219,GO:0019222,GO:0019538,GO:0019783,GO:0019784,GO:0019899,GO:0031056,GO:0031057,GO:0031323,GO:0031324,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031625,GO:0031974,GO:0031981,GO:0032182,GO:0032268,GO:0032269,GO:0033043,GO:0033044,GO:0033182,GO:0033183,GO:0033554,GO:0034097,GO:0035871,GO:0036211,GO:0036459,GO:0042221,GO:0043130,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045738,GO:0045934,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0051716,GO:0060255,GO:0065007,GO:0070011,GO:0070013,GO:0070536,GO:0070555,GO:0070646,GO:0070647,GO:0070887,GO:0071108,GO:0071310,GO:0071345,GO:0071347,GO:0071704,GO:0080090,GO:0080134,GO:0080135,GO:0101005,GO:0140096,GO:1900044,GO:1900045,GO:1901314,GO:1901315,GO:1901564,GO:1902275,GO:1902914,GO:1902915,GO:1903320,GO:1903321,GO:1905268,GO:2000779,GO:2000780,GO:2001020,GO:2001021,GO:2001251
Preferred nameOTUB1
DescriptionNEDD8-specific protease activity
COG categoryO
Max annot lvl2759|Eukaryota
EggNOG OGsKOG3991@1|root,KOG3991@2759|Eukaryota
Evalue4.62e-68
Seed ortholog2880.D8LU52
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPeptidase C65, otubain
Ec32 orthologEc-16_000260.1
TranscriptId353268
TrackFilteredModels1
ProteinId352946
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352946gene_13824Tribonema minus UTEX_B_3156 geneContig_137 327503..330862 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352946Trimin1|352946|estExt_Genemark1.C_Ctg_1370043Tribonema minus UTEX_B_3156 polypeptideContig_137 327503..330628 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13824_5exon_13824_5Tribonema minus UTEX_B_3156 exonContig_137 327503..327767 -
exon_13824_4exon_13824_4Tribonema minus UTEX_B_3156 exonContig_137 328758..328971 -
exon_13824_3exon_13824_3Tribonema minus UTEX_B_3156 exonContig_137 329827..329992 -
exon_13824_2exon_13824_2Tribonema minus UTEX_B_3156 exonContig_137 330410..330637 -
exon_13824_1exon_13824_1Tribonema minus UTEX_B_3156 exonContig_137 330791..330862 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13824CDS_13824Tribonema minus UTEX_B_3156 CDSContig_137 330410..330628 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_13824UTR5_13824Tribonema minus UTEX_B_3156 five_prime_UTRContig_137 330791..330862 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13824 ID=mRNA_13824|Name=jgi.p|Trimin1|352946|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=945bp|location=Sequence derived from alignment at Contig_137:327503..330862- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GCCTTCTTGGGAGCTGCTTCAGATACCCCTGCTTGTTCTTGGTCCGCGCT
GAGCATCGGTCGAGCACAATCGAGCTGACCTATGGAATCTTCGGAGCGGG
ACCAGGAGGAGGCAACCTCTGAGTCTGCGAAGAAATTGCAGGAGTACGAA
GCCACAGTAGCTCAGCAAAACGCCATTCAGGAGGAAATCAAGAAGGCGCA
GCCGTTGGTGGGAAAGGCGGTGTCACCCAGCGCGCTGAGCCCTGAGTACA
CAGACAACGTGAAGCCGGGCTTCTTGAAGGGCATCGAATACCTGTCTAAG
CGATACGCGCGCCTCAGGCCAGTGCGCGGCGACGGTAACTGCTTCTATCG
CGCCCTGACGTTTGCACTGCTGGAAAACCTGGTGCTCAAGCTGCGGTCGG
GGGATGCCGCAGCTGCGCAAGCAGCCAAGGCGGAGGCGCAGCGCCTTGTT
GACAAAGGCAAGCCCATGAAAGAAAGCTGTCAAACACTTCTGAGCCTCGG
CTACGAAGAGGTGTCCTTTGACATGTTCTCAGCGGAACTGCTGGAGGCAC
TGGAGGGCATTGAGACCACCACGCCAGAATCGCTGGAGGCCAAGTTCAAT
GAGGATGGCGGTTCGGGGGAGTACATCATGTGGTTCTGCCGGTTGCTTAC
CAGTGCGTTCATCAAGTCCCATCCTAGCAGGTTTGAGTCGTTTCTGATTG
GCGACACGGTGGACACCTTCTGCGCGCGCGAAGTGGAGCCGCTGGGCGTA
GAGTGCGAACAGCTACAGATCATCGCTCTGTGCGAGCAACTGGACATAGG
CGTGCGCATTGAGTACCTTAACGGCGAGGACTTTGATGCGAGTAAGGGGC
TAGATGCGGTGCCCGTTAATATGGATGGGAGGCAGGAAGCGGCTGCGGAG
CTGTTGTTCCGGCCGGGGCACTACGACATTCTGTACACAGCGTAG
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protein sequence of jgi.p|Trimin1|352946

>Trimin1|352946|estExt_Genemark1.C_Ctg_1370043 ID=Trimin1|352946|estExt_Genemark1.C_Ctg_1370043|Name=jgi.p|Trimin1|352946|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=288bp
MESSERDQEEATSESAKKLQEYEATVAQQNAIQEEIKKAQPLVGKAVSPS
ALSPEYTDNVKPGFLKGIEYLSKRYARLRPVRGDGNCFYRALTFALLENL
VLKLRSGDAAAAQAAKAEAQRLVDKGKPMKESCQTLLSLGYEEVSFDMFS
AELLEALEGIETTTPESLEAKFNEDGGSGEYIMWFCRLLTSAFIKSHPSR
FESFLIGDTVDTFCAREVEPLGVECEQLQIIALCEQLDIGVRIEYLNGED
FDASKGLDAVPVNMDGRQEAAAELLFRPGHYDILYTA*
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mRNA from alignment at Contig_137:327503..330862-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13824 ID=mRNA_13824|Name=jgi.p|Trimin1|352946|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3360bp|location=Sequence derived from alignment at Contig_137:327503..330862- (Tribonema minus UTEX_B_3156 )
GCCTTCTTGGGAGCTGCTTCAGATACCCCTGCTTGTTCTTGGTCCGCGCT GAGCATCGGTCGAGCACAATCGGTAAGCACAGCCGTAGTTGCTGACGCGC AGAACGATCCAGGATCCTGGTTTTGTTTTGGCACCTGGAATTTGCGTTTT CCTCTGACATACATCGTCATAATAAAATCACTGCTGCAAATACTCGCTCA ACGGTTTCTCACTGATCATGCACAGAGCTGACCTATGGAATCTTCGGAGC GGGACCAGGAGGAGGCAACCTCTGAGTCTGCGAAGAAATTGCAGGAGTAC GAAGCCACAGTAGCTCAGCAAAACGCCATTCAGGAGGAAATCAAGAAGGC GCAGCCGTTGGTGGGAAAGGCGGTGTCACCCAGCGCGCTGAGCCCTGAGT ACACAGACAACGTGAAGCCGGGCTTCTTGAAGGGCATCGAATACCTGTCT AAGGTGATCACGTGTGCCCATGCCTGTGTCTGTGCCGCACATGTGCATGT GCAGGTGTGTTCCATTGCAGCTCACGTCATGCATAATCTGCCTGAACTGC TGCAGCTGTGATCACGTGTGCGGCACTATTTACTTTGCACTATAATCCCC CGCCCGCCTTGAACATTTATGCACCATTGCCAGTTTCTCATCGTCATGTC TGTCTTTCACGACTGCGCGCACAGCTGTTTGCAGCAGGGAAGTCCCAAGG CGCTCAGGAGACCCTTTTGAGCCCCCCCCCCCCCCCCCCCCCCCCCCGAT CATGTTCATAGCTCTCATGTGATGCCACCTCGCCCCTATCAGATGCCGCC ATCGTCTCTTGAACATTTCCATGGATGTCTGATGCTGATTGTTCTCATGC CAACGCATGCACACGAGCAGCGATACGCGCGCCTCAGGCCAGTGCGCGGC GACGGTAACTGCTTCTATCGCGCCCTGACGTTTGCACTGCTGGAAAACCT GGTGCTCAAGCTGCGGTCGGGGGATGCCGCAGCTGCGCAAGCAGCCAAGG CGGAGGCGCAGCGCCTTGTTGACAAAGGCAAGCCCAGTGTGCCATTCGGC GGCTGCATGTGTCAACCTCAACTCATTCGTGTGTCAACTTCAACTCCGGC AGTTCACAGGTTACTCCTAGGTTCAGCGCTCGTGACACGCTGCCAACCTT TTTCATATGCTCTTGGTACGGTCAGATGCTGCAGGCAGTGCAGCGCTGCG GGGATGTTGCGCATGTATGCGGTCTGTGATGACTGTGCTCACCAGCTGGT CGCATGAAGTGTCGTCACCCAAGGCGGACAGCAGCATTTCACCTAAGGAA CGAAAGTGCCACTTTGTTGACACGGCAATTTGATGTCCAAGCGGGCTCAC ACTTGCTTCACTCAATTTTAGCCAGATTTTACCAGTCCCACATGCTGCAC ATCTTCATGCCTGCACTGAATCAGCGTTGTTGTGATGGTGTTTTTTGGTC TGATCTTGTTGAACAGAGTGTCAACATTTTGCTGAGGGTGCAAATGGTGT TTTTCATGATGCTAGACATGAGAGTTTTGAGTGCGGGTGCGCAGTTAACG CGCCTGTGAAGCGCACAATGCAGGCACACTTCAACTGTAGAACTTTTTTT TTTGCTTGTCGGCCCATGAACCACTGTCTTTGTGCAGGCACACTTCAACT GTAGAACTTTTTTTTTTGCTTGTCGGCCCATGAACCACTGTCTTTGTGGA GGTTCCACACAGCATCTCTTGATTTAACCTTTCTATGCTGTGCTCATTTT CACCCAAGCCTGTTCTAACCCTCATACATATATACATAATCATAATGCGG AATGTATGTACGCCGTGCCTATTTGTCACCTAAACCTAACCCTGACCCTA ACCTCAACCCTCGTATATGCCATGCTTGCCTCGCTGTGCAGTGAAAGAAA GCTGTCAAACACTTCTGAGCCTCGGCTACGAAGAGGTGTCCTTTGACATG TTCTCAGCGGAACTGCTGGAGGCACTGGAGGGCATTGAGACCACCACGCC AGAATCGCTGGAGGCCAAGTTCAATGAGGATGGCGGTTCGGGGGAGTACA TCATGTGGTTCTGCCGGTTGCTTACCAGTGCGTTCATCAAGTCCCATCCT AGCAGGTGCGCGTGCAACAGAATAATAATCGTATTGCTGAGAAGTCTATG GTCTTTATACAATGTGAACAGAGAATCTCGCCGATGCGTGTGCAGGGTGG ATGGTCGACAGATTTGGGACGGGTCACTCTAACCCTTAACCTCAACCCTA ACCTTTAACCCAAGTGTGTGAGCTCAAATTAATGGGCCTGGTGTGCCATC TCACAACATGCATCCCTTACTTCACTGCGCAGCGATCTGTCTGGTGCACA ACTGCAGTACTTGTCATTGTTACTCAAGTATATGGCACCGGCCTTTGACC TGCCTATAACAGCCAACTACCTACGTCAGAGAATCTCTCAATGTATTTCA ACCCTGCGACACTTGCCGCACTTGCACGTCTCACCAACTTGCCAACGAAC AATGCTGATTGTAGATTGAACGTGCTGCAATGGCTATGCCGGGATGCGTA CTTCTGCAGAGCTACCATTAAGTCTGCTGTGGACTTACACTACTATCCGC ACATGACGCCACGACTCATCCGCACGACTCATGCCAAGTTAAGTGATCAC GAACGACGGTGCGCAAAGTACCCTATACGTCCCTGGCAACCCAGGGGATG TCGGCGTCTGCGTTGAAGTTATATACCCTAATTCCAAACCTCACCCGTAC GCCCTAACCTAAGCCTTACCCTCACCCTCTTGCTATATTGCCATGTAGAA GTGAATGTGTTCTGTGATGTCTCATGTCACCGGCAATCAGCGCAATGCTG CAACCGCCAGCATGTACTGGCAATGAGCATGCCGCGGCGGTACCTGCCAT AATGCTGCCACAGTTTGTAATCATGTGCTGTGTCTCGTGCCTCACAACTT CTGATGTTCGCAGTGCGCCGCCGCGCCGCTTCTAGGTTTGAGTCGTTTCT GATTGGCAACACCGTGGACACCTTCTGTGGTAATCATGTGCTTTCTTGTG TCTCATGGCATCTGATGTTGCAATGCGCCGCCGCACCGCTTCCAGGTTTG AGTCGTTTCTGATTGGCGACACGGTGGACACCTTCTGCGCGCGCGAAGTG GAGCCGCTGGGCGTAGAGTGCGAACAGCTACAGATCATCGCTCTGTGCGA GCAACTGGACATAGGCGTGCGCATTGAGTACCTTAACGGCGAGGACTTTG ATGCGAGTAAGGGGCTAGATGCGGTGCCCGTTAATATGGATGGGAGGCAG GAAGCGGCTGCGGAGCTGTTGTTCCGGCCGGGGCACTACGACATTCTGTA CACAGCGTAG
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Coding sequence (CDS) from alignment at Contig_137:327503..330862-

>mRNA_13824 ID=mRNA_13824|Name=jgi.p|Trimin1|352946|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=864bp|location=Sequence derived from alignment at Contig_137:327503..330862- (Tribonema minus UTEX_B_3156 )
ATGGAATCTTCGGAGCGGGACCAGGAGGAGGCAACCTCTGAGTCTGCGAA
GAAATTGCAGGAGTACGAAGCCACAGTAGCTCAGCAAAACGCCATTCAGG
AGGAAATCAAGAAGGCGCAGCCGTTGGTGGGAAAGGCGGTGTCACCCAGC
GCGCTGAGCCCTGAGTACACAGACAACGTGAAGCCGGGCTTCTTGAAGGG
CATCGAATACCTGTCTAAGCGATACGCGCGCCTCAGGCCAGTGCGCGGCG
ACGGTAACTGCTTCTATCGCGCCCTGACGTTTGCACTGCTGGAAAACCTG
GTGCTCAAGCTGCGGTCGGGGGATGCCGCAGCTGCGCAAGCAGCCAAGGC
GGAGGCGCAGCGCCTTGTTGACAAAGGCAAGCCCATGAAAGAAAGCTGTC
AAACACTTCTGAGCCTCGGCTACGAAGAGGTGTCCTTTGACATGTTCTCA
GCGGAACTGCTGGAGGCACTGGAGGGCATTGAGACCACCACGCCAGAATC
GCTGGAGGCCAAGTTCAATGAGGATGGCGGTTCGGGGGAGTACATCATGT
GGTTCTGCCGGTTGCTTACCAGTGCGTTCATCAAGTCCCATCCTAGCAGG
TTTGAGTCGTTTCTGATTGGCGACACGGTGGACACCTTCTGCGCGCGCGA
AGTGGAGCCGCTGGGCGTAGAGTGCGAACAGCTACAGATCATCGCTCTGT
GCGAGCAACTGGACATAGGCGTGCGCATTGAGTACCTTAACGGCGAGGAC
TTTGATGCGAGTAAGGGGCTAGATGCGGTGCCCGTTAATATGGATGGGAG
GCAGGAAGCGGCTGCGGAGCTGTTGTTCCGGCCGGGGCACTACGACATTC
TGTACACAGCGTAG
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