mRNA_13801 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|176450
Unique NamemRNA_13801
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|176450 vs. uniprot
Match: A0A835ZEJ6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEJ6_9STRA)

HSP 1 Score: 169 bits (429), Expect = 3.890e-53
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 1 
Query:    1 MTRPQLRAACAALAAAAARGAELRTIPAASARALVAEGGAAAAAAEPHSLLRIRRELLDVLMPFQREGVRFALERGGRCLIADEMGTGKTIQVRG 285
            MTRPQLRAACAALAAAAARGAELRTIPAASARALVAEGGAAAAAAEPHSLLRIRRELLDVLMPFQREGVRFALERGGRCLIADEMGTGKTIQVRG
Sbjct:    1 MTRPQLRAACAALAAAAARGAELRTIPAASARALVAEGGAAAAAAEPHSLLRIRRELLDVLMPFQREGVRFALERGGRCLIADEMGTGKTIQVRG 95
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BLAST of jgi.p|Trimin1|176450 vs. uniprot
Match: A0A392Q8B9_9FABA (DNA annealing helicase and endonuclease ZRANB3-like n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392Q8B9_9FABA)

HSP 1 Score: 68.9 bits (167), Expect = 3.350e-13
Identity = 30/42 (71.43%), Postives = 37/42 (88.10%), Query Frame = 1 
Query:  154 RIRRELLDVLMPFQREGVRFALERGGRCLIADEMGTGKTIQV 279
            ++ + LLDVL+PFQ +G+RFAL RGGRCLIADEMG GKT+QV
Sbjct:   50 KLPKSLLDVLLPFQMDGLRFALRRGGRCLIADEMGLGKTLQV 91
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BLAST of jgi.p|Trimin1|176450 vs. uniprot
Match: A0A2N9II73_FAGSY (Helicase ATP-binding domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9II73_FAGSY)

HSP 1 Score: 69.7 bits (169), Expect = 8.200e-12
Identity = 31/44 (70.45%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:  148 LLRIRRELLDVLMPFQREGVRFALERGGRCLIADEMGTGKTIQV 279
            + ++ R LLD L+PFQ EGVRFAL RGGRCLIADEMG GKT+Q 
Sbjct:  194 ITKLPRTLLDTLLPFQHEGVRFALRRGGRCLIADEMGLGKTLQA 237
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BLAST of jgi.p|Trimin1|176450 vs. uniprot
Match: A0A0D2MJF9_9CHLO (SNF2 family DNA-dependent ATPase n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MJF9_9CHLO)

HSP 1 Score: 67.8 bits (164), Expect = 3.690e-11
Identity = 39/66 (59.09%), Postives = 42/66 (63.64%), Query Frame = 1 
Query:   94 RALVAEGGAAAAAAEPHS----LLRIRRELLDVLMPFQREGVRFALERGGRCLIADEMGTGKTIQV 279
            R L A  GAA   A P      L  +   L  VL+PFQREGVRF LERGGRCLIADEMG GKT+Q 
Sbjct:  441 RTLAAFRGAACPRAPPAEVAARLAAMPASLAAVLLPFQREGVRFGLERGGRCLIADEMGVGKTLQA 506
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BLAST of jgi.p|Trimin1|176450 vs. uniprot
Match: A0A2K3MR70_TRIPR (DNA annealing helicase and endonuclease ZRANB3-like protein n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3MR70_TRIPR)

HSP 1 Score: 67.4 bits (163), Expect = 4.290e-11
Identity = 29/42 (69.05%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:  154 RIRRELLDVLMPFQREGVRFALERGGRCLIADEMGTGKTIQV 279
            ++ + LLDVL+PFQ +G+RFAL RGGRCLIADEMG GKT+Q 
Sbjct:  164 KLPKSLLDVLLPFQMDGLRFALRRGGRCLIADEMGLGKTLQA 205
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BLAST of jgi.p|Trimin1|176450 vs. uniprot
Match: UPI001E692E18 (DNA annealing helicase and endonuclease ZRANB3 isoform X1 n=2 Tax=Trifolium pratense TaxID=57577 RepID=UPI001E692E18)

HSP 1 Score: 67.4 bits (163), Expect = 5.270e-11
Identity = 29/42 (69.05%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:  154 RIRRELLDVLMPFQREGVRFALERGGRCLIADEMGTGKTIQV 279
            ++ + LLDVL+PFQ +G+RFAL RGGRCLIADEMG GKT+Q 
Sbjct:  178 KLPKSLLDVLLPFQMDGLRFALRRGGRCLIADEMGLGKTLQA 219
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BLAST of jgi.p|Trimin1|176450 vs. uniprot
Match: A0A067ETM0_CITSI (Uncharacterized protein n=7 Tax=Citrus TaxID=2706 RepID=A0A067ETM0_CITSI)

HSP 1 Score: 67.0 bits (162), Expect = 7.150e-11
Identity = 29/42 (69.05%), Postives = 35/42 (83.33%), Query Frame = 1 
Query:  154 RIRRELLDVLMPFQREGVRFALERGGRCLIADEMGTGKTIQV 279
            ++ + LLDV++PFQ EGVRF L RGGRCLIADEMG GKT+Q 
Sbjct:  192 KLPKSLLDVILPFQLEGVRFGLRRGGRCLIADEMGLGKTLQA 233
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BLAST of jgi.p|Trimin1|176450 vs. uniprot
Match: A0A2K1Y9X8_POPTR (Uncharacterized protein n=7 Tax=Populus TaxID=3689 RepID=A0A2K1Y9X8_POPTR)

HSP 1 Score: 67.0 bits (162), Expect = 7.200e-11
Identity = 29/39 (74.36%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:  163 RELLDVLMPFQREGVRFALERGGRCLIADEMGTGKTIQV 279
            R+LLDVL+PFQ +G+RF L RGGRCLIADEMG GKT+Q 
Sbjct:  204 RKLLDVLLPFQHDGLRFGLRRGGRCLIADEMGLGKTLQA 242
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BLAST of jgi.p|Trimin1|176450 vs. uniprot
Match: A0A444FHN1_ENSVE (Uncharacterized protein n=1 Tax=Ensete ventricosum TaxID=4639 RepID=A0A444FHN1_ENSVE)

HSP 1 Score: 65.9 bits (159), Expect = 9.280e-11
Identity = 30/42 (71.43%), Postives = 35/42 (83.33%), Query Frame = 1 
Query:  154 RIRRELLDVLMPFQREGVRFALERGGRCLIADEMGTGKTIQV 279
            ++ + L + L+PFQ EGVRFAL RGGRCLIADEMG GKTIQV
Sbjct:  209 KLPKSLRNALLPFQLEGVRFALRRGGRCLIADEMGLGKTIQV 250
[Close]
BLAST of jgi.p|Trimin1|176450 vs. uniprot
Match: UPI001CFBE8DA (DNA annealing helicase and endonuclease ZRANB3 isoform X1 n=2 Tax=Mangifera indica TaxID=29780 RepID=UPI001CFBE8DA)

HSP 1 Score: 66.6 bits (161), Expect = 9.840e-11
Identity = 29/42 (69.05%), Postives = 35/42 (83.33%), Query Frame = 1 
Query:  154 RIRRELLDVLMPFQREGVRFALERGGRCLIADEMGTGKTIQV 279
            ++ + L+DVL+PFQ EGVRF L RGGRCLIADEMG GKT+Q 
Sbjct:  208 KLPKRLVDVLLPFQLEGVRFGLRRGGRCLIADEMGLGKTLQA 249
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|176450 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZEJ6_9STRA3.890e-53100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A392Q8B9_9FABA3.350e-1371.43DNA annealing helicase and endonuclease ZRANB3-lik... [more]
A0A2N9II73_FAGSY8.200e-1270.45Helicase ATP-binding domain-containing protein n=1... [more]
A0A0D2MJF9_9CHLO3.690e-1159.09SNF2 family DNA-dependent ATPase n=1 Tax=Monoraphi... [more]
A0A2K3MR70_TRIPR4.290e-1169.05DNA annealing helicase and endonuclease ZRANB3-lik... [more]
UPI001E692E185.270e-1169.05DNA annealing helicase and endonuclease ZRANB3 iso... [more]
A0A067ETM0_CITSI7.150e-1169.05Uncharacterized protein n=7 Tax=Citrus TaxID=2706 ... [more]
A0A2K1Y9X8_POPTR7.200e-1174.36Uncharacterized protein n=7 Tax=Populus TaxID=3689... [more]
A0A444FHN1_ENSVE9.280e-1171.43Uncharacterized protein n=1 Tax=Ensete ventricosum... [more]
UPI001CFBE8DA9.840e-1169.05DNA annealing helicase and endonuclease ZRANB3 iso... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_137contigContig_137:166849..167136 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|176450|e_gw1.137.129.1
BRITEko00000,ko01000,ko03036
KEGG koko:K14440
EC3.6.4.12
GOsGO:0000018,GO:0000228,GO:0000733,GO:0003674,GO:0003676,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008150,GO:0008152,GO:0008156,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010556,GO:0010558,GO:0010605,GO:0016043,GO:0016462,GO:0016787,GO:0016788,GO:0016817,GO:0016818,GO:0017111,GO:0019219,GO:0019222,GO:0031297,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031593,GO:0031974,GO:0031981,GO:0032392,GO:0033554,GO:0034641,GO:0034645,GO:0036292,GO:0036310,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0045005,GO:0045910,GO:0045934,GO:0046483,GO:0048478,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051171,GO:0051172,GO:0051276,GO:0051716,GO:0060255,GO:0065007,GO:0070013,GO:0070530,GO:0071103,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090329,GO:0097159,GO:0097617,GO:0140030,GO:0140097,GO:1901360,GO:1901363,GO:1901576,GO:2000104,GO:2000112,GO:2000113
DescriptionDNA annealing helicase and endonuclease
COG categoryL
Max annot lvl35493|Streptophyta
EggNOG OGsCOG0553@1|root,KOG1000@2759|Eukaryota,37I6N@33090|Viridiplantae,3GCK6@35493|Streptophyta,4JKPG@91835|fabids
Evalue4.64e-12
Seed ortholog225117.XP_009338669.1
Hectar predicted targeting categorysignal peptide
TranscriptId176772
TrackFilteredModels1
ProteinId176450
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|176450gene_13801Tribonema minus UTEX_B_3156 geneContig_137 166849..167136 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13801_1exon_13801_1Tribonema minus UTEX_B_3156 exonContig_137 166849..167136 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13801CDS_13801Tribonema minus UTEX_B_3156 CDSContig_137 166849..167136 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|176450Trimin1|176450|e_gw1.137.129.1Tribonema minus UTEX_B_3156 polypeptideContig_137 166849..167136 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13801 ID=mRNA_13801|Name=jgi.p|Trimin1|176450|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=288bp|location=Sequence derived from alignment at Contig_137:166849..167136+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGACGCGGCCGCAGCTGCGCGCGGCGTGCGCGGCGCTGGCGGCGGCGGC
GGCGCGCGGCGCGGAGCTGAGGACCATACCGGCGGCGTCGGCGCGCGCTC
TGGTGGCGGAGGGTGGCGCGGCGGCGGCGGCGGCGGAGCCCCACAGCCTG
CTGCGGATACGGCGGGAGCTGCTGGACGTGCTGATGCCGTTTCAGAGGGA
GGGGGTGAGGTTTGCGCTGGAGCGCGGGGGGCGGTGTTTGATCGCCGACG
AGATGGGCACGGGCAAGACGATACAGGTGCGTGGGTAG
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protein sequence of jgi.p|Trimin1|176450

>Trimin1|176450|e_gw1.137.129.1 ID=Trimin1|176450|e_gw1.137.129.1|Name=jgi.p|Trimin1|176450|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=96bp
MTRPQLRAACAALAAAAARGAELRTIPAASARALVAEGGAAAAAAEPHSL
LRIRRELLDVLMPFQREGVRFALERGGRCLIADEMGTGKTIQVRG*
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mRNA from alignment at Contig_137:166849..167136+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13801 ID=mRNA_13801|Name=jgi.p|Trimin1|176450|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=288bp|location=Sequence derived from alignment at Contig_137:166849..167136+ (Tribonema minus UTEX_B_3156 )
ATGACGCGGCCGCAGCTGCGCGCGGCGTGCGCGGCGCTGGCGGCGGCGGC
GGCGCGCGGCGCGGAGCTGAGGACCATACCGGCGGCGTCGGCGCGCGCTC
TGGTGGCGGAGGGTGGCGCGGCGGCGGCGGCGGCGGAGCCCCACAGCCTG
CTGCGGATACGGCGGGAGCTGCTGGACGTGCTGATGCCGTTTCAGAGGGA
GGGGGTGAGGTTTGCGCTGGAGCGCGGGGGGCGGTGTTTGATCGCCGACG
AGATGGGCACGGGCAAGACGATACAGGTGCGTGGGTAG
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Coding sequence (CDS) from alignment at Contig_137:166849..167136+

>mRNA_13801 ID=mRNA_13801|Name=jgi.p|Trimin1|176450|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=288bp|location=Sequence derived from alignment at Contig_137:166849..167136+ (Tribonema minus UTEX_B_3156 )
ATGACGCGGCCGCAGCTGCGCGCGGCGTGCGCGGCGCTGGCGGCGGCGGC
GGCGCGCGGCGCGGAGCTGAGGACCATACCGGCGGCGTCGGCGCGCGCTC
TGGTGGCGGAGGGTGGCGCGGCGGCGGCGGCGGCGGAGCCCCACAGCCTG
CTGCGGATACGGCGGGAGCTGCTGGACGTGCTGATGCCGTTTCAGAGGGA
GGGGGTGAGGTTTGCGCTGGAGCGCGGGGGGCGGTGTTTGATCGCCGACG
AGATGGGCACGGGCAAGACGATACAGGTGCGTGGGTAG
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