mRNA_13797 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|142044
Unique NamemRNA_13797
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|142044 vs. uniprot
Match: A0A835ZB61_9STRA (Polcalcin Nic t 1-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB61_9STRA)

HSP 1 Score: 149 bits (377), Expect = 6.210e-46
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 1
Query:    1 DLRIPFRRFDADGDGVLSLTEFGDALAALNAGLTAQHLLALFKHFDPNGSGTINSGEFLWAFFNRRRLLRQL 216
            DLRIPFRRFDADGDGVLSLTEFGDALAALNAGLTAQHLLALFKHFDPNGSGTINSGEFLWAFFNRRRLLRQL
Sbjct:    1 DLRIPFRRFDADGDGVLSLTEFGDALAALNAGLTAQHLLALFKHFDPNGSGTINSGEFLWAFFNRRRLLRQL 72          
BLAST of jgi.p|Trimin1|142044 vs. uniprot
Match: A0A7S1UJX2_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UJX2_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 2.020e-20
Identity = 43/71 (60.56%), Postives = 50/71 (70.42%), Query Frame = 1
Query:    1 DLRIPFRRFDADGDGVLSLTEFGDALAALNAGLTAQHLLALFKHFDPNGSGTINSGEFLWAFFNRRRLLRQ 213
            DLR  F  FD  GD VLS+ EFG AL  L   LT   ++ALF+HFDPNGSG +N GEFLWAFFNRR  L++
Sbjct:   91 DLRSVFEAFDESGDNVLSVQEFGKALQILVPELTVPEMVALFRHFDPNGSGGVNYGEFLWAFFNRRSFLKR 161          
BLAST of jgi.p|Trimin1|142044 vs. uniprot
Match: A0A7S3UR20_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UR20_HETAK)

HSP 1 Score: 75.1 bits (183), Expect = 1.210e-14
Identity = 38/78 (48.72%), Postives = 51/78 (65.38%), Query Frame = 1
Query:    1 DLRIPFRRFDA------DGDGVLSLTEFGDALAALNAGLTAQHLLALFKHFDPNGSGTINSGEFLWAFFNRRRLLRQL 216
            DLR  F+ FD+      D +G LS+ +F +A+ +L   L  +   AL +HFDPNGSG IN GEFL+AFFNRR LL ++
Sbjct:   63 DLRKCFKSFDSAEALDDDAEGTLSMDQFENAVKSLGVPLQEEEASALCRHFDPNGSGAINYGEFLYAFFNRRALLNEV 140          
BLAST of jgi.p|Trimin1|142044 vs. uniprot
Match: A0A7S2ADU6_9DINO (Calmodulin n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2ADU6_9DINO)

HSP 1 Score: 51.2 bits (121), Expect = 7.610e-6
Identity = 25/63 (39.68%), Postives = 39/63 (61.90%), Query Frame = 1
Query:    4 LRIPFRRFDADGDGVLSLTEFGDALAALNAGLTAQHLLALFKHFDPNGSGTINSGEFLWAFFN 192
            +R  FRRFDAD DGV++L+EF  AL      L+ + ++++ KHFD +  G ++  EF  A  +
Sbjct:   46 VRDIFRRFDADRDGVMTLSEFEAALHKFGFMLSKEEVVSVMKHFDTSKDGQVSYNEFCDAMLD 108          
BLAST of jgi.p|Trimin1|142044 vs. uniprot
Match: A0A6J0UR06_9SAUR (calcium-binding protein 4-like n=1 Tax=Pogona vitticeps TaxID=103695 RepID=A0A6J0UR06_9SAUR)

HSP 1 Score: 51.2 bits (121), Expect = 8.430e-6
Identity = 26/60 (43.33%), Postives = 37/60 (61.67%), Query Frame = 1
Query:    1 DLRIPFRRFDADGDGVLSLTEFGDALAAL-NAGLTAQHLLALFKHFDPNGSGTINSGEFL 177
            +L+I FR FD DGDG++SL E   A+ AL    L AQ +  + K  D NG G+++  EF+
Sbjct:  196 ELKIAFREFDTDGDGMISLAELRQAVTALLGEQLNAQEVDEILKDVDLNGDGSVDFDEFV 255          
BLAST of jgi.p|Trimin1|142044 vs. uniprot
Match: A0A7S3M8P0_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M8P0_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 2.300e-5
Identity = 23/53 (43.40%), Postives = 31/53 (58.49%), Query Frame = 1
Query:   16 FRRFDADGDGVLSLTEFGDALAALNAGLTAQHLLALFKHFDPNGSGTINSGEF 174
            F+++D DGDGV+SL E    L  LN   T + L+ +FK  D N  G I+  EF
Sbjct:   43 FKKWDTDGDGVISLEELERVLIILNPSFTKKDLMMIFKQADANKDGKIDYHEF 95          
BLAST of jgi.p|Trimin1|142044 vs. uniprot
Match: A0A7X6E9N9_9PSED (EF-hand domain-containing protein n=3 Tax=Pseudomonadaceae TaxID=135621 RepID=A0A7X6E9N9_9PSED)

HSP 1 Score: 47.4 bits (111), Expect = 2.730e-5
Identity = 27/57 (47.37%), Postives = 32/57 (56.14%), Query Frame = 1
Query:    7 RIPFRRFDADGDGVLSLTEFGDALAALNAGLTAQHLLALFKHFDPNGSGTINSGEFL 177
            R  F R+D +GDG LS TEF  AL      LT + L AL K  +PN  G I+  EFL
Sbjct:   23 RKDFERYDTNGDGTLSTTEFRKALEPY---LTPEDLKALMKEVNPNADGKISWTEFL 76          
BLAST of jgi.p|Trimin1|142044 vs. uniprot
Match: A0A7S4SPH1_9DINO (Calmodulin (Fragment) n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4SPH1_9DINO)

HSP 1 Score: 48.9 bits (115), Expect = 6.400e-5
Identity = 26/59 (44.07%), Postives = 38/59 (64.41%), Query Frame = 1
Query:   16 FRRFDADGDGVLSLTEFGDALAALNAGL-TAQHLLALFKHFDPNGSGTINSGEFL-WAF 186
            FRRFD++GDGV+SL E    L AL++   TA+ +  LF+  D    GT+++ EF+ W F
Sbjct:  286 FRRFDSNGDGVISLVEMQAVLKALDSDFWTAERVERLFERADAKRDGTLDTEEFINWLF 344          
BLAST of jgi.p|Trimin1|142044 vs. uniprot
Match: UPI000C6DDEA6 (calmodulin-like n=1 Tax=Centruroides sculpturatus TaxID=218467 RepID=UPI000C6DDEA6)

HSP 1 Score: 47.8 bits (112), Expect = 6.770e-5
Identity = 23/62 (37.10%), Postives = 32/62 (51.61%), Query Frame = 1
Query:   16 FRRFDADGDGVLSLTEFGDALAALNAGLTAQHLLALFKHFDPNGSGTINSGEFLWAFFNRRR 201
            F RFD DGDGVL++ EFG  +  L   +T   L    +  +P G G++N   FL     R +
Sbjct:   20 FSRFDNDGDGVLTIKEFGRLMRFLGQSMTESELQDAMEELNPGGEGSLNFPGFLTLMTKRTK 81          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|142044 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A835ZB61_9STRA6.210e-46100.00Polcalcin Nic t 1-like protein (Fragment) n=1 Tax=... [more]
A0A7S1UJX2_9STRA2.020e-2060.56Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S3UR20_HETAK1.210e-1448.72Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2ADU6_9DINO7.610e-639.68Calmodulin n=1 Tax=Alexandrium andersonii TaxID=32... [more]
A0A6J0UR06_9SAUR8.430e-643.33calcium-binding protein 4-like n=1 Tax=Pogona vitt... [more]
A0A7S3M8P0_9STRA2.300e-543.40Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7X6E9N9_9PSED2.730e-547.37EF-hand domain-containing protein n=3 Tax=Pseudomo... [more]
A0A7S4SPH1_9DINO6.400e-544.07Calmodulin (Fragment) n=1 Tax=Alexandrium monilatu... [more]
UPI000C6DDEA66.770e-537.10calmodulin-like n=1 Tax=Centruroides sculpturatus ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_137contigContig_137:132644..132859 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|142044|gw1.137.63.1
Descriptioncalcium ion binding
COG categoryDTZ
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5126@1|root,KOG0028@2759|Eukaryota
Evalue6.31e-13
Seed ortholog157072.XP_008875646.1
Hectar predicted targeting categoryother localisation
TranscriptId142366
TrackFilteredModels1
ProteinId142044
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|142044gene_13797Tribonema minus UTEX_B_3156 geneContig_137 132644..132859 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13797_1exon_13797_1Tribonema minus UTEX_B_3156 exonContig_137 132644..132859 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13797CDS_13797Tribonema minus UTEX_B_3156 CDSContig_137 132644..132859 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|142044Trimin1|142044|gw1.137.63.1Tribonema minus UTEX_B_3156 polypeptideContig_137 132644..132859 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13797 ID=mRNA_13797|Name=jgi.p|Trimin1|142044|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=216bp|location=Sequence derived from alignment at Contig_137:132644..132859+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GATCTGCGCATCCCGTTCCGCCGCTTCGACGCGGACGGCGACGGCGTGCT
CTCGCTCACGGAATTCGGCGACGCGCTGGCAGCGCTCAACGCGGGCCTCA
CCGCTCAGCACCTGCTGGCGCTGTTCAAGCACTTTGACCCTAACGGCTCG
GGCACCATCAACAGCGGCGAGTTCCTATGGGCGTTCTTCAACCGCAGGCG
CCTGCTGCGGCAGCTG
back to top

protein sequence of jgi.p|Trimin1|142044

>Trimin1|142044|gw1.137.63.1 ID=Trimin1|142044|gw1.137.63.1|Name=jgi.p|Trimin1|142044|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=72bp
DLRIPFRRFDADGDGVLSLTEFGDALAALNAGLTAQHLLALFKHFDPNGS
GTINSGEFLWAFFNRRRLLRQL
back to top

mRNA from alignment at Contig_137:132644..132859+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13797 ID=mRNA_13797|Name=jgi.p|Trimin1|142044|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=216bp|location=Sequence derived from alignment at Contig_137:132644..132859+ (Tribonema minus UTEX_B_3156 )
GATCTGCGCATCCCGTTCCGCCGCTTCGACGCGGACGGCGACGGCGTGCT CTCGCTCACGGAATTCGGCGACGCGCTGGCAGCGCTCAACGCGGGCCTCA CCGCTCAGCACCTGCTGGCGCTGTTCAAGCACTTTGACCCTAACGGCTCG GGCACCATCAACAGCGGCGAGTTCCTATGGGCGTTCTTCAACCGCAGGCG CCTGCTGCGGCAGCTG
back to top

Coding sequence (CDS) from alignment at Contig_137:132644..132859+

>mRNA_13797 ID=mRNA_13797|Name=jgi.p|Trimin1|142044|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=216bp|location=Sequence derived from alignment at Contig_137:132644..132859+ (Tribonema minus UTEX_B_3156 )
GATCTGCGCATCCCGTTCCGCCGCTTCGACGCGGACGGCGACGGCGTGCT
CTCGCTCACGGAATTCGGCGACGCGCTGGCAGCGCTCAACGCGGGCCTCA
CCGCTCAGCACCTGCTGGCGCTGTTCAAGCACTTTGACCCTAACGGCTCG
GGCACCATCAACAGCGGCGAGTTCCTATGGGCGTTCTTCAACCGCAGGCG
CCTGCTGCGGCAGCTG
back to top