mRNA_13792 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|130172
Unique NamemRNA_13792
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|130172 vs. uniprot
Match: A0A836CNI6_9STRA (Ankyrin repeat-containing domain protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNI6_9STRA)

HSP 1 Score: 173 bits (438), Expect = 2.420e-53
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 1 
Query:    1 PLHLAAAHGNAAMARHLLSRGARANVANSGGWSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVCTRAGQFDVLAALVALLAAHGGGAPCLEALDGAGQTPLLVAAGCGNLAAARILLSHGASAHL 399
            PLHLAAAHGNAAMARHLLSRGARANVANSGGWSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVCTRAGQFDVLAALVALLAAHGGGAPCLEALDGAGQTPLLVAAGCGNLAAARILLSHGASAHL
Sbjct:    1 PLHLAAAHGNAAMARHLLSRGARANVANSGGWSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVCTRAGQFDVLAALVALLAAHGGGAPCLEALDGAGQTPLLVAAGCGNLAAARILLSHGASAHL 133
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|130172 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CNI6_9STRA2.420e-53100.00Ankyrin repeat-containing domain protein (Fragment... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_137contigContig_137:93843..94241 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|130172|gw1.137.7.1
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-15_001350.1
TranscriptId130494
TrackFilteredModels1
ProteinId130172
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|130172gene_13792Tribonema minus UTEX_B_3156 geneContig_137 93843..94241 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13792_1exon_13792_1Tribonema minus UTEX_B_3156 exonContig_137 93843..94241 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13792CDS_13792Tribonema minus UTEX_B_3156 CDSContig_137 93843..94241 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|130172Trimin1|130172|gw1.137.7.1Tribonema minus UTEX_B_3156 polypeptideContig_137 93843..94241 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13792 ID=mRNA_13792|Name=jgi.p|Trimin1|130172|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=399bp|location=Sequence derived from alignment at Contig_137:93843..94241+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CCGCTGCACCTCGCCGCGGCGCACGGCAACGCCGCGATGGCGCGCCACCT
GCTGAGCCGCGGCGCGCGCGCGAACGTCGCCAACAGCGGCGGCTGGTCGC
CGCTGCACTACGCCGTGCTCGGCGGGCGCCCCGACGTCGCCGAGGCGCTG
CTGCTGCACGGCGCGTGGGCGCTCTTCCGCGACAACGCGGGGTCCACGCC
GCTGCACGTCGTGTGCACGCGCGCGGGGCAGTTCGACGTGCTCGCCGCGC
TCGTCGCGCTGCTCGCGGCGCACGGCGGCGGCGCGCCGTGCCTCGAGGCG
CTCGACGGCGCGGGCCAGACGCCGCTGCTCGTCGCCGCCGGCTGCGGCAA
CCTCGCGGCGGCGCGCATTCTGCTGTCGCACGGCGCGAGCGCGCACCTG
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protein sequence of jgi.p|Trimin1|130172

>Trimin1|130172|gw1.137.7.1 ID=Trimin1|130172|gw1.137.7.1|Name=jgi.p|Trimin1|130172|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=133bp
PLHLAAAHGNAAMARHLLSRGARANVANSGGWSPLHYAVLGGRPDVAEAL
LLHGAWALFRDNAGSTPLHVVCTRAGQFDVLAALVALLAAHGGGAPCLEA
LDGAGQTPLLVAAGCGNLAAARILLSHGASAHL
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mRNA from alignment at Contig_137:93843..94241+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13792 ID=mRNA_13792|Name=jgi.p|Trimin1|130172|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=399bp|location=Sequence derived from alignment at Contig_137:93843..94241+ (Tribonema minus UTEX_B_3156 )
CCGCTGCACCTCGCCGCGGCGCACGGCAACGCCGCGATGGCGCGCCACCT
GCTGAGCCGCGGCGCGCGCGCGAACGTCGCCAACAGCGGCGGCTGGTCGC
CGCTGCACTACGCCGTGCTCGGCGGGCGCCCCGACGTCGCCGAGGCGCTG
CTGCTGCACGGCGCGTGGGCGCTCTTCCGCGACAACGCGGGGTCCACGCC
GCTGCACGTCGTGTGCACGCGCGCGGGGCAGTTCGACGTGCTCGCCGCGC
TCGTCGCGCTGCTCGCGGCGCACGGCGGCGGCGCGCCGTGCCTCGAGGCG
CTCGACGGCGCGGGCCAGACGCCGCTGCTCGTCGCCGCCGGCTGCGGCAA
CCTCGCGGCGGCGCGCATTCTGCTGTCGCACGGCGCGAGCGCGCACCTG
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Coding sequence (CDS) from alignment at Contig_137:93843..94241+

>mRNA_13792 ID=mRNA_13792|Name=jgi.p|Trimin1|130172|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=399bp|location=Sequence derived from alignment at Contig_137:93843..94241+ (Tribonema minus UTEX_B_3156 )
CCGCTGCACCTCGCCGCGGCGCACGGCAACGCCGCGATGGCGCGCCACCT
GCTGAGCCGCGGCGCGCGCGCGAACGTCGCCAACAGCGGCGGCTGGTCGC
CGCTGCACTACGCCGTGCTCGGCGGGCGCCCCGACGTCGCCGAGGCGCTG
CTGCTGCACGGCGCGTGGGCGCTCTTCCGCGACAACGCGGGGTCCACGCC
GCTGCACGTCGTGTGCACGCGCGCGGGGCAGTTCGACGTGCTCGCCGCGC
TCGTCGCGCTGCTCGCGGCGCACGGCGGCGGCGCGCCGTGCCTCGAGGCG
CTCGACGGCGCGGGCCAGACGCCGCTGCTCGTCGCCGCCGGCTGCGGCAA
CCTCGCGGCGGCGCGCATTCTGCTGTCGCACGGCGCGAGCGCGCACCTG
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