mRNA_13791 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|176405
Unique NamemRNA_13791
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|176405 vs. uniprot
Match: A0A836CKF4_9STRA (Complex1_LYR_dom domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKF4_9STRA)

HSP 1 Score: 284 bits (726), Expect = 6.670e-97
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 1
Query:    1 MIIKRPPNREAIRLYREILRGCKQFHWCNEKGEPWSRVLKESARNEFEQAREERVMVVGVAAPYGSIAPAAVAGSMTRVVFLHFGADIVLFAGVRFCLLRLQDPLLVAKMLVVGRQCLNDTLYKYDTTNAKISEKIETTRNRK 429
            MIIKRPPNREAIRLYREILRGCKQFHWCNEKGEPWSRVLKESARNEFEQAREERVMVVGVAAPYGSIAPAAVAGSMTRVVFLHFGADIVLFAGVRFCLLRLQDPLLVAKMLVVGRQCLNDTLYKYDTTNAKISEKIETTRNRK
Sbjct:    1 MIIKRPPNREAIRLYREILRGCKQFHWCNEKGEPWSRVLKESARNEFEQAREERVMVVGVAAPYGSIAPAAVAGSMTRVVFLHFGADIVLFAGVRFCLLRLQDPLLVAKMLVVGRQCLNDTLYKYDTTNAKISEKIETTRNRK 143          
BLAST of jgi.p|Trimin1|176405 vs. uniprot
Match: D8LQ13_ECTSI (Complex1_LYR_dom domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ13_ECTSI)

HSP 1 Score: 119 bits (298), Expect = 1.220e-31
Identity = 71/149 (47.65%), Postives = 88/149 (59.06%), Query Frame = 1
Query:   22 NREAIRLYREILRGCKQFHWCNEKGEPWSRVLKESARNEFEQAREERVMVVGVAAPYGSIAPAAVAGSMTRVVFLHFGADIVLFAGVRFCLLRL--------------QDPLLVAKMLVVGRQCLNDTLYKYDTTNAKISEKIETTRNR 426
            NREAIRLYREIL+  + FHWCNEKGEPW R+L+ES+R EFEQAR E   VV V  P GS           R+ F   G    +  G     +RL              QDPL+VA++LVVGRQCLNDT+   + T  +I++KI  TR+R
Sbjct:   16 NREAIRLYREILKATRLFHWCNEKGEPWGRILRESSRKEFEQARHETASVVVVCIPQGS-----------RLRFSGRGRLQPVPGGFHKPNMRLRPLPQAKHSLETPVQDPLVVARLLVVGRQCLNDTIRGLEKTERRIADKITETRSR 153          
BLAST of jgi.p|Trimin1|176405 vs. uniprot
Match: A0A4D9CQU1_9STRA (Complex1_LYR_dom domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CQU1_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 1.040e-23
Identity = 53/136 (38.97%), Postives = 69/136 (50.74%), Query Frame = 1
Query:   19 PNREAIRLYREILRGCKQFHWCNEKGEPWSRVLKESARNEFEQAREERVMVVGVAAPYGSIAPAAVAGSMTRVVFLHFGADIVLFAGVRFCLLRLQDPLLVAKMLVVGRQCLNDTLYKYDTTNAKISEKIETTRNR 426
            PNREA+RLYREILR  ++F+W N++GEPW  VL+  AR EFEQAR E+                                                DPL++A++LVVGR C+  T YK+D T  KI EK++ TR R
Sbjct:   10 PNREALRLYREILRTARRFYWPNDEGEPWREVLRREARKEFEQARAEK------------------------------------------------DPLIIARLLVVGRDCVMQTQYKFDMTQQKIKEKVDRTRTR 97          
BLAST of jgi.p|Trimin1|176405 vs. uniprot
Match: W7TLN0_9STRA (Complex 1 LYR protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TLN0_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 2.350e-22
Identity = 52/137 (37.96%), Postives = 69/137 (50.36%), Query Frame = 1
Query:   19 PNREAIRLYREILRGCKQFHWCNEKGEPWSRVLKESARNEFEQAREERVMVVGVAAPYGSIAPAAVAGSMTRVVFLHFGADIVLFAGVRFCLLRLQDPLLVAKMLVVGRQCLNDTLYKYDTTNAKISEKIETTRNRK 429
            PNREA+RLYREILR  ++F+W N++GEPW  VL+  AR EFEQAR E+                                                DPL++A++LVVGR C+  T YK+D T  KI E ++ TR R+
Sbjct:   10 PNREALRLYREILRTARRFYWPNDEGEPWREVLRREARKEFEQARAEK------------------------------------------------DPLIIARLLVVGRDCVMQTQYKFDMTQQKIRENVDKTRTRR 98          
BLAST of jgi.p|Trimin1|176405 vs. uniprot
Match: A0A7S3PK43_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PK43_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 5.060e-20
Identity = 49/135 (36.30%), Postives = 67/135 (49.63%), Query Frame = 1
Query:   22 NREAIRLYREILRGCKQFHWCNEKGEPWSRVLKESARNEFEQAREERVMVVGVAAPYGSIAPAAVAGSMTRVVFLHFGADIVLFAGVRFCLLRLQDPLLVAKMLVVGRQCLNDTLYKYDTTNAKISEKIETTRNR 426
             RE +RLYREI+R    F+W NEKGEPWS VLK SAR EFE+AR E                                                 DPL+VA+++VVG+QC+N+T  K++    +I  ++++TRNR
Sbjct:   16 KREVLRLYREIIRTANAFYWPNEKGEPWSAVLKRSARKEFEEARNE------------------------------------------------TDPLIVARLVVVGQQCVNETRNKFNAMEEQIKNRVKSTRNR 102          
BLAST of jgi.p|Trimin1|176405 vs. uniprot
Match: A0A7R9Z9Y3_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z9Y3_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 7.190e-17
Identity = 45/130 (34.62%), Postives = 59/130 (45.38%), Query Frame = 1
Query:   22 NREAIRLYREILRGCKQFHWCNEKGEPWSRVLKESARNEFEQAREERVMVVGVAAPYGSIAPAAVAGSMTRVVFLHFGADIVLFAGVRFCLLRLQDPLLVAKMLVVGRQCLNDTLYKYDTTNAKISEKIE 411
             REA+ LYREILR CK FHWC+E+G PW+R LKE AR EFE +REE                                                 DPL++A+MLV GR C+     K++  +    E+I+
Sbjct:   24 RREALSLYREILRTCKAFHWCDEQGIPWNRKLKEEARREFEASREE------------------------------------------------TDPLIIARMLVTGRDCVQQVQQKFNAADRAAWERIQ 105          
BLAST of jgi.p|Trimin1|176405 vs. uniprot
Match: A0A7S2A1J3_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A1J3_TRICV)

HSP 1 Score: 80.1 bits (196), Expect = 1.100e-16
Identity = 45/129 (34.88%), Postives = 59/129 (45.74%), Query Frame = 1
Query:   22 NREAIRLYREILRGCKQFHWCNEKGEPWSRVLKESARNEFEQAREERVMVVGVAAPYGSIAPAAVAGSMTRVVFLHFGADIVLFAGVRFCLLRLQDPLLVAKMLVVGRQCLNDTLYKYDTTNAKISEKI 408
             RE + LYREILR C+ FHWC+EKG PW++ LK+ AR EFE AREER                                                DPL++A+MLVVGR C+     K++  +    E+I
Sbjct:   29 RREVLSLYREILRTCRAFHWCDEKGIPWNKRLKDEARKEFETAREER------------------------------------------------DPLIIARMLVVGRDCVTQIQQKFNAADQAAWERI 109          
BLAST of jgi.p|Trimin1|176405 vs. uniprot
Match: A0A2R5G3Q8_9STRA (WD repeat-containing protein pop2 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G3Q8_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 5.730e-13
Identity = 44/131 (33.59%), Postives = 61/131 (46.56%), Query Frame = 1
Query:   31 AIRLYREILRGCKQFHWCNEKGEPWSRVLKESARNEFEQAREERVMVVGVAAPYGSIAPAAVAGSMTRVVFLHFGADIVLFAGVRFCLLRLQDPLLVAKMLVVGRQCLNDTLYKYDTTNAKISEKIETTRN 423
            A+ LYR+ LR  + F+W ++ GEPWS VLK SAR EFE+AR E                                                 DP+++A+MLVVGRQC+ D   K++ T   I ++I+ TRN
Sbjct: 1005 ALSLYRDCLRMARCFYWADDNGEPWSVVLKRSARKEFEEARNE------------------------------------------------TDPIIIARMLVVGRQCVEDMKRKFNETEDAIRKRIDRTRN 1087          
BLAST of jgi.p|Trimin1|176405 vs. uniprot
Match: A0A6S8YS25_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A6S8YS25_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 2.080e-12
Identity = 39/130 (30.00%), Postives = 56/130 (43.08%), Query Frame = 1
Query:   22 NREAIRLYREILRGCKQFHWCNEKGEPWSRVLKESARNEFEQAREERVMVVGVAAPYGSIAPAAVAGSMTRVVFLHFGADIVLFAGVRFCLLRLQDPLLVAKMLVVGRQCLNDTLYKYDTTNAKISEKIE 411
             +E++ LYREILR  K FHWC+E+G PW+  L++ AR EFEQ+REE                                                 DPL++A+MLV GR C+     K+   +     +I+
Sbjct:   23 RKESLSLYREILRTTKAFHWCDERGNPWNVRLRQEARKEFEQSREE------------------------------------------------ADPLIIARMLVTGRDCVQQIQAKFSEADRAAWSRIQ 104          
BLAST of jgi.p|Trimin1|176405 vs. uniprot
Match: A0A8K0AG14_ANDGO (Mitochondrial Complex1_LYR family protein n=1 Tax=Andalucia godoyi TaxID=505711 RepID=A0A8K0AG14_ANDGO)

HSP 1 Score: 68.6 bits (166), Expect = 3.160e-12
Identity = 41/134 (30.60%), Postives = 61/134 (45.52%), Query Frame = 1
Query:   22 NREAIRLYREILRGCKQFHWCNEKGEPWSRVLKESARNEFEQAREERVMVVGVAAPYGSIAPAAVAGSMTRVVFLHFGADIVLFAGVRFCLLRLQDPLLVAKMLVVGRQCLNDTLYKYDTTNAKISEKIETTRN 423
             RE + LYR+ILR  ++F W +E G PWS +L++SAR EFE A++E+                                                DP ++A++LVVGR CL+ T+  Y     K+   IE++RN
Sbjct:   23 RREVLCLYRDILRVARRFSWNSESGHPWSVILQQSARKEFESAKQEK------------------------------------------------DPEVIARLLVVGRDCLDKTVNAYHDQWEKLKSNIESSRN 108          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|176405 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CKF4_9STRA6.670e-97100.00Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
D8LQ13_ECTSI1.220e-3147.65Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
A0A4D9CQU1_9STRA1.040e-2338.97Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
W7TLN0_9STRA2.350e-2237.96Complex 1 LYR protein n=1 Tax=Nannochloropsis gadi... [more]
A0A7S3PK43_9STRA5.060e-2036.30Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A7R9Z9Y3_9STRA7.190e-1734.62Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S2A1J3_TRICV1.100e-1634.88Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A2R5G3Q8_9STRA5.730e-1333.59WD repeat-containing protein pop2 n=1 Tax=Hondaea ... [more]
A0A6S8YS25_9STRA2.080e-1230.00Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A8K0AG14_ANDGO3.160e-1230.60Mitochondrial Complex1_LYR family protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_137contigContig_137:91030..92404 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|176405|e_gw1.137.130.1
DescriptionBelongs to the complex I LYR family
COG categoryS
Max annot lvl5878|Ciliophora
EggNOG OGs2AUGM@1|root,2RZU3@2759|Eukaryota,3ZCIV@5878|Ciliophora
Evalue1.8e-10
Seed ortholog5911.EAR93245
Hectar predicted targeting categoryother localisation
TranscriptId176727
TrackFilteredModels1
ProteinId176405
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|176405gene_13791Tribonema minus UTEX_B_3156 geneContig_137 91030..92404 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13791_1exon_13791_1Tribonema minus UTEX_B_3156 exonContig_137 91030..91195 +
exon_13791_2exon_13791_2Tribonema minus UTEX_B_3156 exonContig_137 91640..91723 +
exon_13791_3exon_13791_3Tribonema minus UTEX_B_3156 exonContig_137 92223..92404 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13791CDS_13791Tribonema minus UTEX_B_3156 CDSContig_137 91030..91195 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|176405Trimin1|176405|e_gw1.137.130.1Tribonema minus UTEX_B_3156 polypeptideContig_137 91030..92404 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13791 ID=mRNA_13791|Name=jgi.p|Trimin1|176405|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=432bp|location=Sequence derived from alignment at Contig_137:91030..92404+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGATAATAAAGAGACCGCCAAATCGGGAAGCGATCCGGTTGTACAGGGA
AATACTGCGGGGATGCAAGCAGTTTCACTGGTGCAACGAGAAGGGGGAAC
CGTGGTCTCGCGTGTTGAAGGAGAGCGCGAGGAATGAGTTCGAGCAGGCC
AGAGAAGAACGAGTAATGGTCGTGGGGGTAGCAGCCCCATATGGCAGCAT
TGCGCCTGCGGCTGTTGCAGGCAGCATGACTCGAGTTGTCTTTCTCCACT
TTGGGGCTGACATTGTGCTGTTTGCTGGTGTCCGCTTCTGCCTGTTGCGC
TTGCAGGATCCGTTGTTAGTGGCCAAGATGTTGGTGGTGGGCCGCCAGTG
TCTCAACGACACACTGTACAAGTATGATACGACCAACGCTAAGATCTCAG
AGAAGATCGAAACAACAAGAAACAGAAAATGA
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protein sequence of jgi.p|Trimin1|176405

>Trimin1|176405|e_gw1.137.130.1 ID=Trimin1|176405|e_gw1.137.130.1|Name=jgi.p|Trimin1|176405|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=144bp
MIIKRPPNREAIRLYREILRGCKQFHWCNEKGEPWSRVLKESARNEFEQA
REERVMVVGVAAPYGSIAPAAVAGSMTRVVFLHFGADIVLFAGVRFCLLR
LQDPLLVAKMLVVGRQCLNDTLYKYDTTNAKISEKIETTRNRK*
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mRNA from alignment at Contig_137:91030..92404+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13791 ID=mRNA_13791|Name=jgi.p|Trimin1|176405|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1375bp|location=Sequence derived from alignment at Contig_137:91030..92404+ (Tribonema minus UTEX_B_3156 )
ATGATAATAAAGAGACCGCCAAATCGGGAAGCGATCCGGTTGTACAGGGA AATACTGCGGGGATGCAAGCAGTTTCACTGGTGCAACGAGAAGGGGGAAC CGTGGTCTCGCGTGTTGAAGGAGAGCGCGAGGAATGAGTTCGAGCAGGCC AGAGAAGAACGAGTAAGTGCCAACGAAACAGACTCAGCTTGTCTGCTTTC AAAAGAAGCAGTCTCGTGTACTGGAGCACTTGCTTCGCGAGCACTGATAT GGCGGCACTGTTTGTTGAGGCGCAAAGTTCCTGTTAGCCACCTGGGTAGC CCACTTGCTTTCTGTATCAGCAGCAGCATGTCAATCACCAGTACACGAAA CCATCAGTTGCACTCAAAAGTACTTGAAAGTCATTCAAGCTGCATGTCTT CAGCAGCAATACATGTACATGCACCGCAATTAGAAGCTGCCCACCTTATG GTGATCACTGAGACATCTTCAACGTCAAGGACGTCTTGTGGACAAGAGTG TTGCCGACCTTAGTTGCGTCAAGCGGTTACATCAGATTAGCATTGGTGTT GCCAACCTTAGTTGCGCCAAGCTGTTACATCAGATTAGAATCAGTCACAC ATGGCTTCAGTGGTCGTGGGGGTAGCAGCCCCATATGGCAGCATTGCGCC TGCGGCTGTTGCAGGCAGCATGACTCGAGTTGTCTTTCTCCACTGTAGCT CTGCATGGCAACACATCAATTCAAGGCGGAGCACACGCTGAGCGCTGTTG CCAGGTGCCAGAACACATCCACTGAGCTCTTTCACCAAATATTCGTGAAC ATAATGGCCAGTGTGATTTCATCCCGGCTGGTGTGCATGCAGAACCTTAA CAGCAACAGCACTGCAGCAATGCCACCATGAGATGCATTGACATTATGTG TGCTGTGCTGTTGTGTAGCTCATACGTCCAAGGAACTCTGTTCGAGCCCT GGTGACTTGCATGGTTTCTCCTTTGTGCATGACTTTCATATTGCTGCACC CAATGGTTTGTGGCATACTCAATAGCATGGATGTGGTCGTGGTAAATCGG CAAACAAGAACCGCCTATATACTGCATACTGTTATCTCGTAGGAACATAC GACATTGACGTGTCACGTGCCACGTGCCACAAGCTGGTGCTGCGATTTTC TCACGCACAGGGTGCCAGCTCCAATAAGGCTGTACACTGATAGTTGGGGC TGACATTGTGCTGTTTGCTGGTGTCCGCTTCTGCCTGTTGCGCTTGCAGG ATCCGTTGTTAGTGGCCAAGATGTTGGTGGTGGGCCGCCAGTGTCTCAAC GACACACTGTACAAGTATGATACGACCAACGCTAAGATCTCAGAGAAGAT CGAAACAACAAGAAACAGAAAATGA
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Coding sequence (CDS) from alignment at Contig_137:91030..92404+

>mRNA_13791 ID=mRNA_13791|Name=jgi.p|Trimin1|176405|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=432bp|location=Sequence derived from alignment at Contig_137:91030..92404+ (Tribonema minus UTEX_B_3156 )
ATGATAATAAAGAGACCGCCAAATCGGGAAGCGATCCGGTTGTACAGGGA
AATACTGCGGGGATGCAAGCAGTTTCACTGGTGCAACGAGAAGGGGGAAC
CGTGGTCTCGCGTGTTGAAGGAGAGCGCGAGGAATGAGTTCGAGCAGGCC
AGAGAAGAACGAGTAATGGTCGTGGGGGTAGCAGCCCCATATGGCAGCAT
TGCGCCTGCGGCTGTTGCAGGCAGCATGACTCGAGTTGTCTTTCTCCACT
TTGGGGCTGACATTGTGCTGTTTGCTGGTGTCCGCTTCTGCCTGTTGCGC
TTGCAGGATCCGTTGTTAGTGGCCAAGATGTTGGTGGTGGGCCGCCAGTG
TCTCAACGACACACTGTACAAGTATGATACGACCAACGCTAAGATCTCAG
AGAAGATCGAAACAACAAGAAACAGAAAATGA
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