mRNA_13791 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|176405 vs. uniprot
Match: A0A836CKF4_9STRA (Complex1_LYR_dom domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKF4_9STRA) HSP 1 Score: 284 bits (726), Expect = 6.670e-97 Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 1 Query: 1 MIIKRPPNREAIRLYREILRGCKQFHWCNEKGEPWSRVLKESARNEFEQAREERVMVVGVAAPYGSIAPAAVAGSMTRVVFLHFGADIVLFAGVRFCLLRLQDPLLVAKMLVVGRQCLNDTLYKYDTTNAKISEKIETTRNRK 429 MIIKRPPNREAIRLYREILRGCKQFHWCNEKGEPWSRVLKESARNEFEQAREERVMVVGVAAPYGSIAPAAVAGSMTRVVFLHFGADIVLFAGVRFCLLRLQDPLLVAKMLVVGRQCLNDTLYKYDTTNAKISEKIETTRNRK Sbjct: 1 MIIKRPPNREAIRLYREILRGCKQFHWCNEKGEPWSRVLKESARNEFEQAREERVMVVGVAAPYGSIAPAAVAGSMTRVVFLHFGADIVLFAGVRFCLLRLQDPLLVAKMLVVGRQCLNDTLYKYDTTNAKISEKIETTRNRK 143
BLAST of jgi.p|Trimin1|176405 vs. uniprot
Match: D8LQ13_ECTSI (Complex1_LYR_dom domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ13_ECTSI) HSP 1 Score: 119 bits (298), Expect = 1.220e-31 Identity = 71/149 (47.65%), Postives = 88/149 (59.06%), Query Frame = 1 Query: 22 NREAIRLYREILRGCKQFHWCNEKGEPWSRVLKESARNEFEQAREERVMVVGVAAPYGSIAPAAVAGSMTRVVFLHFGADIVLFAGVRFCLLRL--------------QDPLLVAKMLVVGRQCLNDTLYKYDTTNAKISEKIETTRNR 426 NREAIRLYREIL+ + FHWCNEKGEPW R+L+ES+R EFEQAR E VV V P GS R+ F G + G +RL QDPL+VA++LVVGRQCLNDT+ + T +I++KI TR+R Sbjct: 16 NREAIRLYREILKATRLFHWCNEKGEPWGRILRESSRKEFEQARHETASVVVVCIPQGS-----------RLRFSGRGRLQPVPGGFHKPNMRLRPLPQAKHSLETPVQDPLVVARLLVVGRQCLNDTIRGLEKTERRIADKITETRSR 153
BLAST of jgi.p|Trimin1|176405 vs. uniprot
Match: A0A4D9CQU1_9STRA (Complex1_LYR_dom domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CQU1_9STRA) HSP 1 Score: 97.4 bits (241), Expect = 1.040e-23 Identity = 53/136 (38.97%), Postives = 69/136 (50.74%), Query Frame = 1 Query: 19 PNREAIRLYREILRGCKQFHWCNEKGEPWSRVLKESARNEFEQAREERVMVVGVAAPYGSIAPAAVAGSMTRVVFLHFGADIVLFAGVRFCLLRLQDPLLVAKMLVVGRQCLNDTLYKYDTTNAKISEKIETTRNR 426 PNREA+RLYREILR ++F+W N++GEPW VL+ AR EFEQAR E+ DPL++A++LVVGR C+ T YK+D T KI EK++ TR R Sbjct: 10 PNREALRLYREILRTARRFYWPNDEGEPWREVLRREARKEFEQARAEK------------------------------------------------DPLIIARLLVVGRDCVMQTQYKFDMTQQKIKEKVDRTRTR 97
BLAST of jgi.p|Trimin1|176405 vs. uniprot
Match: W7TLN0_9STRA (Complex 1 LYR protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TLN0_9STRA) HSP 1 Score: 95.5 bits (236), Expect = 2.350e-22 Identity = 52/137 (37.96%), Postives = 69/137 (50.36%), Query Frame = 1 Query: 19 PNREAIRLYREILRGCKQFHWCNEKGEPWSRVLKESARNEFEQAREERVMVVGVAAPYGSIAPAAVAGSMTRVVFLHFGADIVLFAGVRFCLLRLQDPLLVAKMLVVGRQCLNDTLYKYDTTNAKISEKIETTRNRK 429 PNREA+RLYREILR ++F+W N++GEPW VL+ AR EFEQAR E+ DPL++A++LVVGR C+ T YK+D T KI E ++ TR R+ Sbjct: 10 PNREALRLYREILRTARRFYWPNDEGEPWREVLRREARKEFEQARAEK------------------------------------------------DPLIIARLLVVGRDCVMQTQYKFDMTQQKIRENVDKTRTRR 98
BLAST of jgi.p|Trimin1|176405 vs. uniprot
Match: A0A7S3PK43_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PK43_9STRA) HSP 1 Score: 88.2 bits (217), Expect = 5.060e-20 Identity = 49/135 (36.30%), Postives = 67/135 (49.63%), Query Frame = 1 Query: 22 NREAIRLYREILRGCKQFHWCNEKGEPWSRVLKESARNEFEQAREERVMVVGVAAPYGSIAPAAVAGSMTRVVFLHFGADIVLFAGVRFCLLRLQDPLLVAKMLVVGRQCLNDTLYKYDTTNAKISEKIETTRNR 426 RE +RLYREI+R F+W NEKGEPWS VLK SAR EFE+AR E DPL+VA+++VVG+QC+N+T K++ +I ++++TRNR Sbjct: 16 KREVLRLYREIIRTANAFYWPNEKGEPWSAVLKRSARKEFEEARNE------------------------------------------------TDPLIVARLVVVGQQCVNETRNKFNAMEEQIKNRVKSTRNR 102
BLAST of jgi.p|Trimin1|176405 vs. uniprot
Match: A0A7R9Z9Y3_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z9Y3_9STRA) HSP 1 Score: 80.5 bits (197), Expect = 7.190e-17 Identity = 45/130 (34.62%), Postives = 59/130 (45.38%), Query Frame = 1 Query: 22 NREAIRLYREILRGCKQFHWCNEKGEPWSRVLKESARNEFEQAREERVMVVGVAAPYGSIAPAAVAGSMTRVVFLHFGADIVLFAGVRFCLLRLQDPLLVAKMLVVGRQCLNDTLYKYDTTNAKISEKIE 411 REA+ LYREILR CK FHWC+E+G PW+R LKE AR EFE +REE DPL++A+MLV GR C+ K++ + E+I+ Sbjct: 24 RREALSLYREILRTCKAFHWCDEQGIPWNRKLKEEARREFEASREE------------------------------------------------TDPLIIARMLVTGRDCVQQVQQKFNAADRAAWERIQ 105
BLAST of jgi.p|Trimin1|176405 vs. uniprot
Match: A0A7S2A1J3_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A1J3_TRICV) HSP 1 Score: 80.1 bits (196), Expect = 1.100e-16 Identity = 45/129 (34.88%), Postives = 59/129 (45.74%), Query Frame = 1 Query: 22 NREAIRLYREILRGCKQFHWCNEKGEPWSRVLKESARNEFEQAREERVMVVGVAAPYGSIAPAAVAGSMTRVVFLHFGADIVLFAGVRFCLLRLQDPLLVAKMLVVGRQCLNDTLYKYDTTNAKISEKI 408 RE + LYREILR C+ FHWC+EKG PW++ LK+ AR EFE AREER DPL++A+MLVVGR C+ K++ + E+I Sbjct: 29 RREVLSLYREILRTCRAFHWCDEKGIPWNKRLKDEARKEFETAREER------------------------------------------------DPLIIARMLVVGRDCVTQIQQKFNAADQAAWERI 109
BLAST of jgi.p|Trimin1|176405 vs. uniprot
Match: A0A2R5G3Q8_9STRA (WD repeat-containing protein pop2 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G3Q8_9STRA) HSP 1 Score: 75.1 bits (183), Expect = 5.730e-13 Identity = 44/131 (33.59%), Postives = 61/131 (46.56%), Query Frame = 1 Query: 31 AIRLYREILRGCKQFHWCNEKGEPWSRVLKESARNEFEQAREERVMVVGVAAPYGSIAPAAVAGSMTRVVFLHFGADIVLFAGVRFCLLRLQDPLLVAKMLVVGRQCLNDTLYKYDTTNAKISEKIETTRN 423 A+ LYR+ LR + F+W ++ GEPWS VLK SAR EFE+AR E DP+++A+MLVVGRQC+ D K++ T I ++I+ TRN Sbjct: 1005 ALSLYRDCLRMARCFYWADDNGEPWSVVLKRSARKEFEEARNE------------------------------------------------TDPIIIARMLVVGRQCVEDMKRKFNETEDAIRKRIDRTRN 1087
BLAST of jgi.p|Trimin1|176405 vs. uniprot
Match: A0A6S8YS25_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A6S8YS25_9STRA) HSP 1 Score: 68.9 bits (167), Expect = 2.080e-12 Identity = 39/130 (30.00%), Postives = 56/130 (43.08%), Query Frame = 1 Query: 22 NREAIRLYREILRGCKQFHWCNEKGEPWSRVLKESARNEFEQAREERVMVVGVAAPYGSIAPAAVAGSMTRVVFLHFGADIVLFAGVRFCLLRLQDPLLVAKMLVVGRQCLNDTLYKYDTTNAKISEKIE 411 +E++ LYREILR K FHWC+E+G PW+ L++ AR EFEQ+REE DPL++A+MLV GR C+ K+ + +I+ Sbjct: 23 RKESLSLYREILRTTKAFHWCDERGNPWNVRLRQEARKEFEQSREE------------------------------------------------ADPLIIARMLVTGRDCVQQIQAKFSEADRAAWSRIQ 104
BLAST of jgi.p|Trimin1|176405 vs. uniprot
Match: A0A8K0AG14_ANDGO (Mitochondrial Complex1_LYR family protein n=1 Tax=Andalucia godoyi TaxID=505711 RepID=A0A8K0AG14_ANDGO) HSP 1 Score: 68.6 bits (166), Expect = 3.160e-12 Identity = 41/134 (30.60%), Postives = 61/134 (45.52%), Query Frame = 1 Query: 22 NREAIRLYREILRGCKQFHWCNEKGEPWSRVLKESARNEFEQAREERVMVVGVAAPYGSIAPAAVAGSMTRVVFLHFGADIVLFAGVRFCLLRLQDPLLVAKMLVVGRQCLNDTLYKYDTTNAKISEKIETTRN 423 RE + LYR+ILR ++F W +E G PWS +L++SAR EFE A++E+ DP ++A++LVVGR CL+ T+ Y K+ IE++RN Sbjct: 23 RREVLCLYRDILRVARRFSWNSESGHPWSVILQQSARKEFESAKQEK------------------------------------------------DPEVIARLLVVGRDCLDKTVNAYHDQWEKLKSNIESSRN 108 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|176405 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_13791 ID=mRNA_13791|Name=jgi.p|Trimin1|176405|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=432bp|location=Sequence derived from alignment at Contig_137:91030..92404+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGATAATAAAGAGACCGCCAAATCGGGAAGCGATCCGGTTGTACAGGGAback to top protein sequence of jgi.p|Trimin1|176405 >Trimin1|176405|e_gw1.137.130.1 ID=Trimin1|176405|e_gw1.137.130.1|Name=jgi.p|Trimin1|176405|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=144bp MIIKRPPNREAIRLYREILRGCKQFHWCNEKGEPWSRVLKESARNEFEQAback to top mRNA from alignment at Contig_137:91030..92404+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_13791 ID=mRNA_13791|Name=jgi.p|Trimin1|176405|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1375bp|location=Sequence derived from alignment at Contig_137:91030..92404+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_137:91030..92404+ >mRNA_13791 ID=mRNA_13791|Name=jgi.p|Trimin1|176405|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=432bp|location=Sequence derived from alignment at Contig_137:91030..92404+ (Tribonema minus UTEX_B_3156 )back to top |