mRNA_1378 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|161681
Unique NamemRNA_1378
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|161681 vs. uniprot
Match: A0A835Z809_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z809_9STRA)

HSP 1 Score: 298 bits (762), Expect = 2.500e-102
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 1 
Query:    1 MAADLLERRRAVLEAALASQGLTIRPDSGLCRAYIHGMLEAYYTPELISFICGLHKYLYEYTDYGLRCSDIIPRLARMLAPSMGSYEAALTYAKKHEVPIIKAETLSKYGLPEIWPWLQTSPKAAAPGSTCVFHNDLSSATNCVR 435
            MAADLLERRRAVLEAALASQGLTIRPDSGLCRAYIHGMLEAYYTPELISFICGLHKYLYEYTDYGLRCSDIIPRLARMLAPSMGSYEAALTYAKKHEVPIIKAETLSKYGLPEIWPWLQTSPKAAAPGSTCVFHNDLSSATNCVR
Sbjct:    1 MAADLLERRRAVLEAALASQGLTIRPDSGLCRAYIHGMLEAYYTPELISFICGLHKYLYEYTDYGLRCSDIIPRLARMLAPSMGSYEAALTYAKKHEVPIIKAETLSKYGLPEIWPWLQTSPKAAAPGSTCVFHNDLSSATNCVR 145
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BLAST of jgi.p|Trimin1|161681 vs. uniprot
Match: A0A835ZBD3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBD3_9STRA)

HSP 1 Score: 189 bits (480), Expect = 8.280e-60
Identity = 88/111 (79.28%), Postives = 100/111 (90.09%), Query Frame = 1 
Query:   25 RRAVLEAALASQGLTIRPDSGLCRAYIHGMLEAYYTPELISFICGLHKYLYEYTDYGLRCSDIIPRLARMLAPSMGSYEAALTYAKKHEVPIIKAETLSKYGLPEIWPWLQ 357
            RR VLEAAL++ GLTIRPDSGLCR YIH  LE +YTP++I+FICGLHKYLYE TDYG  CSD I RLARMLAPSMGSYE+ALTYAKKHEVPI+KAETLS+YG+P++WPWLQ
Sbjct:    1 RRTVLEAALSAHGLTIRPDSGLCRGYIHNTLEPHYTPDVIAFICGLHKYLYECTDYGAWCSDTILRLARMLAPSMGSYESALTYAKKHEVPILKAETLSEYGMPDVWPWLQ 111
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BLAST of jgi.p|Trimin1|161681 vs. uniprot
Match: A0A835Z4P0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4P0_9STRA)

HSP 1 Score: 160 bits (405), Expect = 1.070e-47
Identity = 71/110 (64.55%), Postives = 91/110 (82.73%), Query Frame = 1 
Query:   25 RRAVLEAALASQGLTIRPDSGLCRAYIHGMLEAYYTPELISFICGLHKYLYEYTDYGLRCSDIIPRLARMLAPSMGSYEAALTYAKKHEVPIIKAETLSKYGLPEIWPWL 354
            RR  LE  L +QGL +R DS LCRAYI G L+++YTPELI+FICG+HKYLYEYTDY  +C++I+PR+ARMLAP++G YE AL Y KK+E P++KAE+L+K+GLP  WPWL
Sbjct:    6 RRQELEDVLKAQGLDLRSDSALCRAYICGSLDSFYTPELIAFICGVHKYLYEYTDYAQKCAEILPRVARMLAPALGGYENALVYTKKYETPMLKAESLAKFGLPSTWPWL 115
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|161681 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835Z809_9STRA2.500e-102100.00Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A835ZBD3_9STRA8.280e-6079.28Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835Z4P0_9STRA1.070e-4764.55Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_18contigContig_18:872415..872852 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|161681|e_gw1.18.329.1
Hectar predicted targeting categoryother localisation
TranscriptId162003
TrackFilteredModels1
ProteinId161681
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161681gene_1378Tribonema minus UTEX_B_3156 geneContig_18 872415..872852 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1378_1exon_1378_1Tribonema minus UTEX_B_3156 exonContig_18 872415..872852 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1378CDS_1378Tribonema minus UTEX_B_3156 CDSContig_18 872415..872852 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161681Trimin1|161681|e_gw1.18.329.1Tribonema minus UTEX_B_3156 polypeptideContig_18 872415..872852 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1378 ID=mRNA_1378|Name=jgi.p|Trimin1|161681|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=438bp|location=Sequence derived from alignment at Contig_18:872415..872852+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGCTGATCTGTTGGAAAGGCGGCGTGCTGTACTTGAGGCGGCTTT
GGCCAGTCAGGGCCTCACCATACGGCCTGATTCAGGACTGTGTCGTGCGT
ACATTCACGGCATGCTCGAGGCATACTACACTCCTGAGCTAATTTCTTTT
ATATGTGGGCTGCACAAGTACCTGTATGAGTACACAGATTACGGACTGCG
CTGTTCAGACATTATACCACGCCTAGCACGCATGCTAGCTCCGTCAATGG
GCAGCTATGAGGCGGCATTGACTTACGCCAAGAAGCATGAGGTGCCCATA
ATCAAAGCAGAGACCTTGTCCAAGTATGGGCTGCCTGAGATTTGGCCTTG
GCTGCAGACCTCACCGAAGGCAGCAGCACCTGGCAGCACATGTGTGTTTC
ACAACGACTTGAGCAGCGCGACCAACTGTGTACGCTAA
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protein sequence of jgi.p|Trimin1|161681

>Trimin1|161681|e_gw1.18.329.1 ID=Trimin1|161681|e_gw1.18.329.1|Name=jgi.p|Trimin1|161681|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=146bp
MAADLLERRRAVLEAALASQGLTIRPDSGLCRAYIHGMLEAYYTPELISF
ICGLHKYLYEYTDYGLRCSDIIPRLARMLAPSMGSYEAALTYAKKHEVPI
IKAETLSKYGLPEIWPWLQTSPKAAAPGSTCVFHNDLSSATNCVR*
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mRNA from alignment at Contig_18:872415..872852+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1378 ID=mRNA_1378|Name=jgi.p|Trimin1|161681|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=438bp|location=Sequence derived from alignment at Contig_18:872415..872852+ (Tribonema minus UTEX_B_3156 )
ATGGCTGCTGATCTGTTGGAAAGGCGGCGTGCTGTACTTGAGGCGGCTTT
GGCCAGTCAGGGCCTCACCATACGGCCTGATTCAGGACTGTGTCGTGCGT
ACATTCACGGCATGCTCGAGGCATACTACACTCCTGAGCTAATTTCTTTT
ATATGTGGGCTGCACAAGTACCTGTATGAGTACACAGATTACGGACTGCG
CTGTTCAGACATTATACCACGCCTAGCACGCATGCTAGCTCCGTCAATGG
GCAGCTATGAGGCGGCATTGACTTACGCCAAGAAGCATGAGGTGCCCATA
ATCAAAGCAGAGACCTTGTCCAAGTATGGGCTGCCTGAGATTTGGCCTTG
GCTGCAGACCTCACCGAAGGCAGCAGCACCTGGCAGCACATGTGTGTTTC
ACAACGACTTGAGCAGCGCGACCAACTGTGTACGCTAA
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Coding sequence (CDS) from alignment at Contig_18:872415..872852+

>mRNA_1378 ID=mRNA_1378|Name=jgi.p|Trimin1|161681|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=438bp|location=Sequence derived from alignment at Contig_18:872415..872852+ (Tribonema minus UTEX_B_3156 )
ATGGCTGCTGATCTGTTGGAAAGGCGGCGTGCTGTACTTGAGGCGGCTTT
GGCCAGTCAGGGCCTCACCATACGGCCTGATTCAGGACTGTGTCGTGCGT
ACATTCACGGCATGCTCGAGGCATACTACACTCCTGAGCTAATTTCTTTT
ATATGTGGGCTGCACAAGTACCTGTATGAGTACACAGATTACGGACTGCG
CTGTTCAGACATTATACCACGCCTAGCACGCATGCTAGCTCCGTCAATGG
GCAGCTATGAGGCGGCATTGACTTACGCCAAGAAGCATGAGGTGCCCATA
ATCAAAGCAGAGACCTTGTCCAAGTATGGGCTGCCTGAGATTTGGCCTTG
GCTGCAGACCTCACCGAAGGCAGCAGCACCTGGCAGCACATGTGTGTTTC
ACAACGACTTGAGCAGCGCGACCAACTGTGTACGCTAA
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