mRNA_13783 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|135457
Unique NamemRNA_13783
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|135457 vs. uniprot
Match: A0A835Z8V0_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8V0_9STRA)

HSP 1 Score: 186 bits (473), Expect = 7.220e-60
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 1 
Query:    1 HTPPRFTPGSYEVSHMKRARGGSISGRLRSASDLEEKGVIDKSQKGVLKDLIISGDSALQAALDRYEGGDPSQLVSLMQRGLLNRRDSLDLLQDL 285
            HTPPRFTPGSYEVSHMKRARGGSISGRLRSASDLEEKGVIDKSQKGVLKDLIISGDSALQAALDRYEGGDPSQLVSLMQRGLLNRRDSLDLLQDL
Sbjct:    1 HTPPRFTPGSYEVSHMKRARGGSISGRLRSASDLEEKGVIDKSQKGVLKDLIISGDSALQAALDRYEGGDPSQLVSLMQRGLLNRRDSLDLLQDL 95
[Close]
BLAST of jgi.p|Trimin1|135457 vs. uniprot
Match: D8LRP7_ECTSI (CCT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRP7_ECTSI)

HSP 1 Score: 153 bits (386), Expect = 2.280e-41
Identity = 77/95 (81.05%), Postives = 84/95 (88.42%), Query Frame = 1 
Query:    1 HTPPRFTPGSYEVSHMKRARGGSISGRLRSASDLEEKGVIDKSQKGVLKDLIISGDSALQAALDRYEGGDPSQLVSLMQRGLLNRRDSLDLLQDL 285
            HTPP FTPGSYEVSHMKRAR GSISGRLRSASDLEEKG+IDKSQKGVLKDLIISGDS LQ ALD Y+ GD SQL +LM+ GLL+RR+S DLL +L
Sbjct:   46 HTPPNFTPGSYEVSHMKRARAGSISGRLRSASDLEEKGLIDKSQKGVLKDLIISGDSQLQTALDLYDNGDASQLEALMENGLLDRRESFDLLDNL 140
[Close]
BLAST of jgi.p|Trimin1|135457 vs. uniprot
Match: A0A7S2D1Q1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D1Q1_9STRA)

HSP 1 Score: 125 bits (314), Expect = 5.570e-33
Identity = 61/96 (63.54%), Postives = 75/96 (78.12%), Query Frame = 1 
Query:    1 HTPP-RFTPGSYEVSHMKRARGGSISGRLRSASDLEEKGVIDKSQKGVLKDLIISGDSALQAALDRYEGGDPSQLVSLMQRGLLNRRDSLDLLQDL 285
            HTPP    P SYE S  KR R GS+SGRLR ASDLE++G+ID  +KG+LKDLIISGD  LQ ALDR+E GDPS+L +LM  G+LN++ S+DLL+DL
Sbjct:   42 HTPPTHHGPSSYEASSAKRPRAGSVSGRLRCASDLEDRGIIDSHEKGILKDLIISGDERLQTALDRFESGDPSELETLMHNGMLNKQSSMDLLEDL 137
[Close]
BLAST of jgi.p|Trimin1|135457 vs. uniprot
Match: A0A8K1FDZ2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FDZ2_PYTOL)

HSP 1 Score: 122 bits (306), Expect = 1.540e-31
Identity = 59/95 (62.11%), Postives = 74/95 (77.89%), Query Frame = 1 
Query:    1 HTPPRFTPGSYEVSHMKRARGGSISGRLRSASDLEEKGVIDKSQKGVLKDLIISGDSALQAALDRYEGGDPSQLVSLMQRGLLNRRDSLDLLQDL 285
            HTPP F+PGS  +   KR R GSIS RL SA+DLEE+G+ID+ QKGVLKDLIISGD ALQ AL++++ GDPS L +++  G LNR+ S+DLL DL
Sbjct:   45 HTPPAFSPGSLTMPMTKRGRSGSISSRLLSATDLEERGIIDRYQKGVLKDLIISGDEALQKALEKFDAGDPSSLEAMLDSGALNRKSSIDLLDDL 139
[Close]
BLAST of jgi.p|Trimin1|135457 vs. uniprot
Match: A0A6G0XXI1_9STRA (CCT domain-containing protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A6G0XXI1_9STRA)

HSP 1 Score: 122 bits (305), Expect = 1.920e-31
Identity = 62/95 (65.26%), Postives = 72/95 (75.79%), Query Frame = 1 
Query:    1 HTPPRFTPGSYEVSHMKRARGGSISGRLRSASDLEEKGVIDKSQKGVLKDLIISGDSALQAALDRYEGGDPSQLVSLMQRGLLNRRDSLDLLQDL 285
            HTPP F+PGS  +   KR R GSISGRL SASDLEEKG ID+ QKGVLKDLIISGD  LQ AL+ +E GDP+ L +L+  G LNR+ S+DLL DL
Sbjct:   51 HTPPAFSPGSLTLPSTKRGRSGSISGRLLSASDLEEKGFIDRYQKGVLKDLIISGDEKLQKALETFEQGDPTALEALLDSGALNRKSSVDLLDDL 145
[Close]
BLAST of jgi.p|Trimin1|135457 vs. uniprot
Match: W4H8Z9_9STRA (CCT domain-containing protein n=4 Tax=Aphanomyces TaxID=100860 RepID=W4H8Z9_9STRA)

HSP 1 Score: 121 bits (303), Expect = 3.780e-31
Identity = 62/95 (65.26%), Postives = 72/95 (75.79%), Query Frame = 1 
Query:    1 HTPPRFTPGSYEVSHMKRARGGSISGRLRSASDLEEKGVIDKSQKGVLKDLIISGDSALQAALDRYEGGDPSQLVSLMQRGLLNRRDSLDLLQDL 285
            HTPP F+PGS  +   KR R GSISGRL SASDLEEKG ID+ QKGVLKDLIISGD  LQ AL+ +E GDP+ L +L+  G LNR+ S+DLL DL
Sbjct:   53 HTPPAFSPGSLTLPSTKRNRSGSISGRLLSASDLEEKGFIDRYQKGVLKDLIISGDEKLQKALETFEQGDPTALEALLDSGALNRKSSVDLLDDL 147
[Close]
BLAST of jgi.p|Trimin1|135457 vs. uniprot
Match: A0A067CEV7_SAPPC (CCT domain-containing protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CEV7_SAPPC)

HSP 1 Score: 120 bits (302), Expect = 5.580e-31
Identity = 62/95 (65.26%), Postives = 72/95 (75.79%), Query Frame = 1 
Query:    1 HTPPRFTPGSYEVSHMKRARGGSISGRLRSASDLEEKGVIDKSQKGVLKDLIISGDSALQAALDRYEGGDPSQLVSLMQRGLLNRRDSLDLLQDL 285
            HTPP F+PGS  +   KR R GSISGRL SASDLEEKG ID+ QKGVLKDLIISGD  LQ AL+ +E GDP+ L +L+  G LNR+ S+DLL DL
Sbjct:   52 HTPPAFSPGSLTLPSTKRNRSGSISGRLLSASDLEEKGFIDRYQKGVLKDLIISGDEKLQKALETFEQGDPTALEALLDSGALNRKTSVDLLDDL 146
[Close]
BLAST of jgi.p|Trimin1|135457 vs. uniprot
Match: K3W9P4_GLOUD (CCT domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W9P4_GLOUD)

HSP 1 Score: 120 bits (300), Expect = 1.710e-30
Identity = 60/95 (63.16%), Postives = 73/95 (76.84%), Query Frame = 1 
Query:    1 HTPPRFTPGSYEVSHMKRARGGSISGRLRSASDLEEKGVIDKSQKGVLKDLIISGDSALQAALDRYEGGDPSQLVSLMQRGLLNRRDSLDLLQDL 285
            HTPP F+PGS  +   KR R GSIS RL SASDLEE+GVID+ QKGVLKDLIISGD ALQ AL++++ GD S L +++  G LNR+ S+DLL DL
Sbjct:   67 HTPPAFSPGSLTMPMTKRGRSGSISSRLLSASDLEERGVIDRYQKGVLKDLIISGDEALQKALEKFDAGDSSTLEAMLDSGALNRKSSVDLLDDL 161
[Close]
BLAST of jgi.p|Trimin1|135457 vs. uniprot
Match: A0A5D6Y220_9STRA (CCT domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y220_9STRA)

HSP 1 Score: 119 bits (299), Expect = 2.220e-30
Identity = 60/95 (63.16%), Postives = 73/95 (76.84%), Query Frame = 1 
Query:    1 HTPPRFTPGSYEVSHMKRARGGSISGRLRSASDLEEKGVIDKSQKGVLKDLIISGDSALQAALDRYEGGDPSQLVSLMQRGLLNRRDSLDLLQDL 285
            HTPP F+PGS  +   KR R GSIS RL SASDLEE+GVID+ QKGVLKDLIISGD ALQ AL++++ GD S L +++  G LNR+ S+DLL DL
Sbjct:   63 HTPPAFSPGSLTMPMTKRNRSGSISSRLLSASDLEERGVIDRYQKGVLKDLIISGDEALQKALEKFDAGDSSTLEAMLDSGALNRKSSIDLLDDL 157
[Close]
BLAST of jgi.p|Trimin1|135457 vs. uniprot
Match: A0A2P4X2C0_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X2C0_9STRA)

HSP 1 Score: 115 bits (289), Expect = 1.100e-29
Identity = 59/96 (61.46%), Postives = 73/96 (76.04%), Query Frame = 1 
Query:    1 HTPPRFTPGSYEVSHMKRARGGSISGRLRSASDLEEKGVIDKSQKGVLKDLIISGDSALQAALDRYEGGDPSQLVSLMQRGLLNRRDS-LDLLQDL 285
            HTPP F+PGS  +   KR R GSIS RL SASDLEE+G ID+ QKGVLKDLIISGD ALQ AL++++ GDP+ L +++  G LNR+ S +DLL DL
Sbjct:  111 HTPPAFSPGSLTMPMTKRGRSGSISSRLLSASDLEERGYIDRYQKGVLKDLIISGDEALQKALEKFDAGDPTTLEAMLDSGALNRKSSSIDLLDDL 206
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|135457 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z8V0_9STRA7.220e-60100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
D8LRP7_ECTSI2.280e-4181.05CCT domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S2D1Q1_9STRA5.570e-3363.54Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A8K1FDZ2_PYTOL1.540e-3162.11Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6G0XXI1_9STRA1.920e-3165.26CCT domain-containing protein n=2 Tax=Aphanomyces ... [more]
W4H8Z9_9STRA3.780e-3165.26CCT domain-containing protein n=4 Tax=Aphanomyces ... [more]
A0A067CEV7_SAPPC5.580e-3165.26CCT domain-containing protein n=4 Tax=Saprolegniac... [more]
K3W9P4_GLOUD1.710e-3063.16CCT domain-containing protein n=1 Tax=Globisporang... [more]
A0A5D6Y220_9STRA2.220e-3063.16CCT domain-containing protein n=1 Tax=Pythium bras... [more]
A0A2P4X2C0_9STRA1.100e-2961.46Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_137contigContig_137:29517..30774 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|135457|gw1.137.32.1
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003700,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0007154,GO:0007165,GO:0007275,GO:0008150,GO:0009314,GO:0009416,GO:0009628,GO:0009639,GO:0009791,GO:0009889,GO:0009908,GO:0009909,GO:0009987,GO:0010017,GO:0010018,GO:0010218,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0022414,GO:0023052,GO:0031323,GO:0031326,GO:0032501,GO:0032502,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0048367,GO:0048580,GO:0048608,GO:0048731,GO:0048831,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051171,GO:0051239,GO:0051252,GO:0051716,GO:0060255,GO:0061458,GO:0065007,GO:0071214,GO:0071478,GO:0071482,GO:0071489,GO:0071490,GO:0080090,GO:0090567,GO:0104004,GO:0140110,GO:1903506,GO:2000026,GO:2000112,GO:2000241,GO:2001141
DescriptionCCT motif
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGs2CXHC@1|root,2RXHA@2759|Eukaryota
Evalue3.74e-42
Seed ortholog2880.D8LRP7
Hectar predicted targeting categoryother localisation
TranscriptId135779
TrackFilteredModels1
ProteinId135457
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|135457gene_13783Tribonema minus UTEX_B_3156 geneContig_137 29517..30774 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|135457Trimin1|135457|gw1.137.32.1Tribonema minus UTEX_B_3156 polypeptideContig_137 29517..30774 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13783_2exon_13783_2Tribonema minus UTEX_B_3156 exonContig_137 29517..29712 -
exon_13783_1exon_13783_1Tribonema minus UTEX_B_3156 exonContig_137 30686..30774 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13783CDS_13783Tribonema minus UTEX_B_3156 CDSContig_137 30686..30774 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13783 ID=mRNA_13783|Name=jgi.p|Trimin1|135457|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=285bp|location=Sequence derived from alignment at Contig_137:29517..30774- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CACACGCCTCCCAGGTTCACCCCTGGCAGCTATGAGGTCAGCCACATGAA
GAGAGCCAGGGGAGGATCTATTTCCGGTCGGCTGCGCAGCGCGTCGGACC
TGGAGGAGAAGGGCGTCATTGACAAGAGCCAGAAGGGCGTGCTCAAAGAC
CTCATCATCAGCGGCGACTCGGCGCTGCAGGCCGCGCTCGACCGCTACGA
GGGCGGCGACCCCTCACAGCTCGTCTCACTCATGCAGCGCGGCCTGCTGA
ACCGGCGCGACTCGCTGGACCTGCTGCAGGACCTG
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protein sequence of jgi.p|Trimin1|135457

>Trimin1|135457|gw1.137.32.1 ID=Trimin1|135457|gw1.137.32.1|Name=jgi.p|Trimin1|135457|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=95bp
HTPPRFTPGSYEVSHMKRARGGSISGRLRSASDLEEKGVIDKSQKGVLKD
LIISGDSALQAALDRYEGGDPSQLVSLMQRGLLNRRDSLDLLQDL
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mRNA from alignment at Contig_137:29517..30774-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13783 ID=mRNA_13783|Name=jgi.p|Trimin1|135457|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1258bp|location=Sequence derived from alignment at Contig_137:29517..30774- (Tribonema minus UTEX_B_3156 )
CACACGCCTCCCAGGTTCACCCCTGGCAGCTATGAGGTCAGCCACATGAA
GAGAGCCAGGGGAGGATCTATTTCCGGTCGGCTGCGCAGGTGAGCACCGG
ACTCTTTTCGTCGTCGATATTCTTGTATTGGATACGCGGGGCAAGGGAAG
CAGATGATCTTCTATGTTACGAGGGCCTTGATAGGCAAGAGTGCGTACAT
CACTGCTTCTGCTGCTGATGGTGTGGTCGGACACATTCACTGTCAAAATC
AGTCTACAGCGTCGCTTACGCTGATGAGTCCACTGCAGATGTTGTCGCCG
GCTGAACGAGTCTCGATCAGATGCAACTTTGCAGCTCAGCTGCATTCATG
CCTCTTTATGTGCTAAGGCGGCGACTGTGCTGCGCACAGCCCTGTTCTTC
TGCAATTATGGGTCCTTGCTGGTCTCATAGGTCTCCATTGTGCGTTTCGC
TGCCGCCGAGATGCATACTTGGTTTCTTTCCAGGAGTACTGCAGACCACG
CACAGCTGCTTGTACATAGCACTGTTGCAGTGCTAACGCGAACAGTTGGC
AGTTTTGCTGGTCCTCGCATGCTTCATTAGCATACATACTGTTGCTCACT
AGCACCTGCCGTTACACACGCTCAGATACGCAGCATGGTGTACGCCAACG
CACACCACGCTTGTCTCTCTTGGCCATGAGCCTTGCCTGGATAACGACAG
CTGCGTACATGGCGCTGTGAGCACAACATCGCTGTTCAGCCACAACCTGC
ACAGGCATCATTTGCAACCTCGAGGCTGGATTGATGGATATGGACAGAGC
AATCGCTATTGCACCCGCGCAGCGCGTCAGATCTGGAGGCGAAGAGCCTC
AATGAACTCATACACCACAATTCATATTCCATATATCTATTGCATGCTCT
GTCGCAGCGCGTTTGACCTGAAGGCGAAGGGCGTCATCGACAAGAGCCAG
ATGAGGGTGTATATGCGCATACATGAACCAATACAGCATGGTCCTTACCT
TGATGAATCAATACACCATACACCATCATCCATACCTCAAAGTATCTGTT
GCGCCCGTGCAGCGCGTCGGACCTGGAGGAGAAGGGCGTCATTGACAAGA
GCCAGAAGGGCGTGCTCAAAGACCTCATCATCAGCGGCGACTCGGCGCTG
CAGGCCGCGCTCGACCGCTACGAGGGCGGCGACCCCTCACAGCTCGTCTC
ACTCATGCAGCGCGGCCTGCTGAACCGGCGCGACTCGCTGGACCTGCTGC
AGGACCTG
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Coding sequence (CDS) from alignment at Contig_137:29517..30774-

>mRNA_13783 ID=mRNA_13783|Name=jgi.p|Trimin1|135457|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=285bp|location=Sequence derived from alignment at Contig_137:29517..30774- (Tribonema minus UTEX_B_3156 )
CACACGCCTCCCAGGTTCACCCCTGGCAGCTATGAGGTCAGCCACATGAA
GAGAGCCAGGGGAGGATCTATTTCCGGTCGGCTGCGCAGCGCGTCGGACC
TGGAGGAGAAGGGCGTCATTGACAAGAGCCAGAAGGGCGTGCTCAAAGAC
CTCATCATCAGCGGCGACTCGGCGCTGCAGGCCGCGCTCGACCGCTACGA
GGGCGGCGACCCCTCACAGCTCGTCTCACTCATGCAGCGCGGCCTGCTGA
ACCGGCGCGACTCGCTGGACCTGCTGCAGGACCTG
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