mRNA_13777 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|166335
Unique NamemRNA_13777
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|166335 vs. uniprot
Match: A0A835YSP3_9STRA (PNPLA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSP3_9STRA)

HSP 1 Score: 236 bits (602), Expect = 6.300e-79
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1 
Query:    1 MHCQITLISPFTSAPPPPPLSQQIWECVRATTAAPTYFKPLQKGAMLFGDGALLANNPTAVALAEARLIYPGVPVEAVVSIGEFRQCGPELALRRHCLQVFAGFKVPQNYMHLL 342
            MHCQITLISPFTSAPPPPPLSQQIWECVRATTAAPTYFKPLQKGAMLFGDGALLANNPTAVALAEARLIYPGVPVEAVVSIGEFRQCGPELALRRHCLQVFAGFKVPQNYMHLL
Sbjct:    1 MHCQITLISPFTSAPPPPPLSQQIWECVRATTAAPTYFKPLQKGAMLFGDGALLANNPTAVALAEARLIYPGVPVEAVVSIGEFRQCGPELALRRHCLQVFAGFKVPQNYMHLL 114
[Close]
BLAST of jgi.p|Trimin1|166335 vs. uniprot
Match: A0A4D9CW07_9STRA (PNPLA domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CW07_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 4.950e-18
Identity = 40/60 (66.67%), Postives = 51/60 (85.00%), Query Frame = 1 
Query:   67 QIWECVRATTAAPTYFKPLQKGAMLFGDGALLANNPTAVALAEARLIYPGVPVEAVVSIG 246
            ++ E +RATTAAPTYF PL +G M+  DGALLANNPTA+A+ EA++IYP VP+EAVVS+G
Sbjct:  367 KVREAIRATTAAPTYFYPLVRGGMVHSDGALLANNPTAIAIHEAKIIYPNVPIEAVVSVG 426
[Close]
BLAST of jgi.p|Trimin1|166335 vs. uniprot
Match: K8Z805_NANGC (Calcium-independent phospholipase a2-gamma n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8Z805_NANGC)

HSP 1 Score: 88.2 bits (217), Expect = 5.410e-18
Identity = 40/60 (66.67%), Postives = 51/60 (85.00%), Query Frame = 1 
Query:   67 QIWECVRATTAAPTYFKPLQKGAMLFGDGALLANNPTAVALAEARLIYPGVPVEAVVSIG 246
            ++ E +RATTAAPTYF PL +G M+  DGALLANNPTA+A+ EA++IYP VP+EAVVS+G
Sbjct:  737 KVREAIRATTAAPTYFYPLVRGGMVHSDGALLANNPTAIAIHEAKIIYPNVPIEAVVSVG 796
[Close]
BLAST of jgi.p|Trimin1|166335 vs. uniprot
Match: D8LL86_ECTSI (Similar to Calcium-independent phospholipase A2-gamma, C terminal part n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL86_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 2.570e-17
Identity = 37/57 (64.91%), Postives = 48/57 (84.21%), Query Frame = 1 
Query:   76 ECVRATTAAPTYFKPLQKGAMLFGDGALLANNPTAVALAEARLIYPGVPVEAVVSIG 246
            ECVRATTAAP++F PL  G M++ DGA LANNPT++AL EA+L+YP VP+E V+S+G
Sbjct:  176 ECVRATTAAPSFFTPLVDGKMMYADGAFLANNPTSIALTEAKLLYPNVPIECVLSVG 232
[Close]
BLAST of jgi.p|Trimin1|166335 vs. uniprot
Match: A0A5J4Z6W4_PORPP (Calcium-independent phospholipase A2-gamma n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z6W4_PORPP)

HSP 1 Score: 85.5 bits (210), Expect = 4.650e-17
Identity = 40/64 (62.50%), Postives = 49/64 (76.56%), Query Frame = 1 
Query:   67 QIWECVRATTAAPTYFKPLQKGAMLFGDGALLANNPTAVALAEARLIYPGVPVEAVVSIGEFRQ 258
            ++WE  RATTAAP YF PLQ G  LF DGALL NNPTA+A+ EAR+++P  P+E VVS+G  RQ
Sbjct:  507 RLWEAARATTAAPAYFDPLQSGDELFCDGALLVNNPTAIAVHEARMLFPDRPLEIVVSVGSGRQ 570
[Close]
BLAST of jgi.p|Trimin1|166335 vs. uniprot
Match: A0A6H5KSL4_9PHAE (PNPLA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSL4_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 6.640e-17
Identity = 37/57 (64.91%), Postives = 48/57 (84.21%), Query Frame = 1 
Query:   76 ECVRATTAAPTYFKPLQKGAMLFGDGALLANNPTAVALAEARLIYPGVPVEAVVSIG 246
            ECVRATTAAP++F PL  G M++ DGA LANNPT++AL EA+L+YP VP+E V+S+G
Sbjct: 1409 ECVRATTAAPSFFTPLVDGNMMYADGAFLANNPTSIALTEAKLLYPNVPIECVLSVG 1465
[Close]
BLAST of jgi.p|Trimin1|166335 vs. uniprot
Match: A0A835YX58_9STRA (Calcium-independent phospholipase-like protein A2-gamma, C terminal part n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX58_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 9.820e-16
Identity = 40/57 (70.18%), Postives = 46/57 (80.70%), Query Frame = 1 
Query:   76 ECVRATTAAPTYFKPLQKGAMLFGDGALLANNPTAVALAEARLIYPGVPVEAVVSIG 246
            E +RATTAAPT+F PL     L+ DGAL+ANNPTAVAL EA+ IYPGVPVE VVS+G
Sbjct:  176 ESLRATTAAPTFFSPLLINGTLYSDGALMANNPTAVALHEAKHIYPGVPVELVVSLG 232
[Close]
BLAST of jgi.p|Trimin1|166335 vs. uniprot
Match: A0A8J5XN29_DIALT (PNPLA domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XN29_DIALT)

HSP 1 Score: 80.9 bits (198), Expect = 2.040e-15
Identity = 43/101 (42.57%), Postives = 61/101 (60.40%), Query Frame = 1 
Query:   10 QITLISPFTSAPPPPPL-------------------SQQIWECVRATTAAPTYFKPLQKGAMLFGDGALLANNPTAVALAEARLIYPGVPVEAVVSIGEFR 255
            ++ L+S  TS  PP P                    S + WE VRA+TAAPTYF+PL +  ++F DG LL+NNPT++A+ EAR ++P  P++A+VSIG  R
Sbjct: 1432 KVFLVSALTSTKPPLPYLFRTYQHDARTPSRFPGDCSTRAWEAVRASTAAPTYFEPLLRDKLMFQDGGLLSNNPTSLAIHEARCLWPDRPIDAIVSIGTGR 1532
[Close]
BLAST of jgi.p|Trimin1|166335 vs. uniprot
Match: A0A4D9DA09_9STRA (PNPLA domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DA09_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 3.730e-15
Identity = 42/64 (65.62%), Postives = 47/64 (73.44%), Query Frame = 1 
Query:   55 PLSQQIWECVRATTAAPTYFKPLQKGAMLFGDGALLANNPTAVALAEARLIYPGVPVEAVVSIG 246
            P S  IW   RATTAAPT+F PL++    + DGA LANNPTAVAL E R +YPGVPVE VVSIG
Sbjct: 1081 PASLYIW---RATTAAPTFFSPLEREDAKYCDGAFLANNPTAVALNEVRTLYPGVPVECVVSIG 1141
[Close]
BLAST of jgi.p|Trimin1|166335 vs. uniprot
Match: A0A6P8Z8L1_THRPL (calcium-independent phospholipase A2-gamma-like n=1 Tax=Thrips palmi TaxID=161013 RepID=A0A6P8Z8L1_THRPL)

HSP 1 Score: 79.7 bits (195), Expect = 4.840e-15
Identity = 37/65 (56.92%), Postives = 49/65 (75.38%), Query Frame = 1 
Query:   73 WECVRATTAAPTYFKPLQKGAMLFGDGALLANNPTAVALAEARLIYPGVPVEAVVSIGEFRQCGP 267
            WE VRA+++APTYF+  Q G +L  DG ++ NNPTAVA+ EARL++PGVP++ VVS G  R C P
Sbjct:  443 WEAVRASSSAPTYFEEFQLGDLLHQDGGIMVNNPTAVAIHEARLLWPGVPIQCVVSFGTGR-CNP 506
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|166335 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YSP3_9STRA6.300e-79100.00PNPLA domain-containing protein n=1 Tax=Tribonema ... [more]
A0A4D9CW07_9STRA4.950e-1866.67PNPLA domain-containing protein n=1 Tax=Nannochlor... [more]
K8Z805_NANGC5.410e-1866.67Calcium-independent phospholipase a2-gamma n=2 Tax... [more]
D8LL86_ECTSI2.570e-1764.91Similar to Calcium-independent phospholipase A2-ga... [more]
A0A5J4Z6W4_PORPP4.650e-1762.50Calcium-independent phospholipase A2-gamma n=1 Tax... [more]
A0A6H5KSL4_9PHAE6.640e-1764.91PNPLA domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A835YX58_9STRA9.820e-1670.18Calcium-independent phospholipase-like protein A2-... [more]
A0A8J5XN29_DIALT2.040e-1542.57PNPLA domain-containing protein n=1 Tax=Diacronema... [more]
A0A4D9DA09_9STRA3.730e-1565.63PNPLA domain-containing protein n=2 Tax=Monodopsid... [more]
A0A6P8Z8L1_THRPL4.840e-1556.92calcium-independent phospholipase A2-gamma-like n=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_43contigContig_43:959082..959426 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|166335|e_gw1.43.45.1
BRITEko00000
KEGG koko:K16815
GOsGO:0000166,GO:0001516,GO:0001676,GO:0003674,GO:0003824,GO:0004620,GO:0004623,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005778,GO:0005783,GO:0005789,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0006636,GO:0006644,GO:0006650,GO:0006690,GO:0006692,GO:0006693,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006869,GO:0008144,GO:0008150,GO:0008152,GO:0008219,GO:0008610,GO:0009056,GO:0009058,GO:0009395,GO:0009987,GO:0010876,GO:0012505,GO:0015711,GO:0015718,GO:0015849,GO:0015908,GO:0015909,GO:0016020,GO:0016042,GO:0016053,GO:0016298,GO:0016787,GO:0016788,GO:0017076,GO:0019369,GO:0019637,GO:0019752,GO:0030554,GO:0031090,GO:0031903,GO:0031984,GO:0032309,GO:0032553,GO:0032555,GO:0032559,GO:0032787,GO:0033036,GO:0033559,GO:0034638,GO:0035639,GO:0036094,GO:0036151,GO:0036152,GO:0042175,GO:0042579,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043651,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0046337,GO:0046338,GO:0046394,GO:0046434,GO:0046456,GO:0046457,GO:0046470,GO:0046475,GO:0046486,GO:0046503,GO:0046717,GO:0046903,GO:0046942,GO:0047499,GO:0050482,GO:0051179,GO:0051234,GO:0052689,GO:0071702,GO:0071704,GO:0071715,GO:0072330,GO:0097159,GO:0097164,GO:0097367,GO:0098588,GO:0098805,GO:0098827,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901568,GO:1901570,GO:1901571,GO:1901575,GO:1901576,GO:1903963
Preferred namePNPLA8
Descriptionphosphatidylethanolamine catabolic process
COG categoryU
Max annot lvl2759|Eukaryota
EggNOG OGsKOG4231@1|root,KOG4231@2759|Eukaryota
Evalue4.21e-18
Seed ortholog2880.D8LL86
Hectar predicted targeting categoryother localisation
TranscriptId166657
TrackFilteredModels1
ProteinId166335
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|166335gene_13777Tribonema minus UTEX_B_3156 geneContig_43 959082..959426 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13777_1exon_13777_1Tribonema minus UTEX_B_3156 exonContig_43 959082..959426 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13777CDS_13777Tribonema minus UTEX_B_3156 CDSContig_43 959082..959426 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|166335Trimin1|166335|e_gw1.43.45.1Tribonema minus UTEX_B_3156 polypeptideContig_43 959082..959426 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13777 ID=mRNA_13777|Name=jgi.p|Trimin1|166335|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=345bp|location=Sequence derived from alignment at Contig_43:959082..959426+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCATTGCCAAATTACTCTGATCTCACCATTCACCAGTGCCCCCCCCCC
TCCCCCCCTCTCTCAACAGATCTGGGAGTGCGTCAGAGCCACGACGGCTG
CCCCCACCTACTTCAAGCCTTTGCAGAAGGGCGCGATGCTCTTTGGCGAC
GGTGCGCTGTTGGCCAACAACCCCACTGCCGTCGCACTGGCTGAGGCACG
GCTCATCTATCCCGGGGTCCCAGTGGAGGCAGTGGTATCAATAGGTGAGT
TCCGGCAATGTGGTCCAGAGCTGGCCTTGCGTAGGCATTGCTTGCAGGTT
TTCGCTGGTTTCAAGGTGCCTCAAAACTACATGCATTTGCTGTAA
back to top

protein sequence of jgi.p|Trimin1|166335

>Trimin1|166335|e_gw1.43.45.1 ID=Trimin1|166335|e_gw1.43.45.1|Name=jgi.p|Trimin1|166335|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=115bp
MHCQITLISPFTSAPPPPPLSQQIWECVRATTAAPTYFKPLQKGAMLFGD
GALLANNPTAVALAEARLIYPGVPVEAVVSIGEFRQCGPELALRRHCLQV
FAGFKVPQNYMHLL*
back to top

mRNA from alignment at Contig_43:959082..959426+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13777 ID=mRNA_13777|Name=jgi.p|Trimin1|166335|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=345bp|location=Sequence derived from alignment at Contig_43:959082..959426+ (Tribonema minus UTEX_B_3156 )
ATGCATTGCCAAATTACTCTGATCTCACCATTCACCAGTGCCCCCCCCCC
TCCCCCCCTCTCTCAACAGATCTGGGAGTGCGTCAGAGCCACGACGGCTG
CCCCCACCTACTTCAAGCCTTTGCAGAAGGGCGCGATGCTCTTTGGCGAC
GGTGCGCTGTTGGCCAACAACCCCACTGCCGTCGCACTGGCTGAGGCACG
GCTCATCTATCCCGGGGTCCCAGTGGAGGCAGTGGTATCAATAGGTGAGT
TCCGGCAATGTGGTCCAGAGCTGGCCTTGCGTAGGCATTGCTTGCAGGTT
TTCGCTGGTTTCAAGGTGCCTCAAAACTACATGCATTTGCTGTAA
back to top

Coding sequence (CDS) from alignment at Contig_43:959082..959426+

>mRNA_13777 ID=mRNA_13777|Name=jgi.p|Trimin1|166335|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=345bp|location=Sequence derived from alignment at Contig_43:959082..959426+ (Tribonema minus UTEX_B_3156 )
ATGCATTGCCAAATTACTCTGATCTCACCATTCACCAGTGCCCCCCCCCC
TCCCCCCCTCTCTCAACAGATCTGGGAGTGCGTCAGAGCCACGACGGCTG
CCCCCACCTACTTCAAGCCTTTGCAGAAGGGCGCGATGCTCTTTGGCGAC
GGTGCGCTGTTGGCCAACAACCCCACTGCCGTCGCACTGGCTGAGGCACG
GCTCATCTATCCCGGGGTCCCAGTGGAGGCAGTGGTATCAATAGGTGAGT
TCCGGCAATGTGGTCCAGAGCTGGCCTTGCGTAGGCATTGCTTGCAGGTT
TTCGCTGGTTTCAAGGTGCCTCAAAACTACATGCATTTGCTGTAA
back to top