mRNA_13762 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|166320
Unique NamemRNA_13762
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|166320 vs. uniprot
Match: A0A835YSE1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSE1_9STRA)

HSP 1 Score: 228 bits (582), Expect = 5.280e-76
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1 
Query:    1 MAQRRRALPSKWSAAENERLRRAVKLHGEPQWKLIAVTVGTRNHSQCLHRWRTVLRPGLAKGPWTAAEDEMLTNLVRQGDISNWGDVAAVITTRTCKQWPRAVAAPPESR 330
            MAQRRRALPSKWSAAENERLRRAVKLHGEPQWKLIAVTVGTRNHSQCLHRWRTVLRPGLAKGPWTAAEDEMLTNLVRQGDISNWGDVAAVITTRTCKQWPRAVAAPPESR
Sbjct:    1 MAQRRRALPSKWSAAENERLRRAVKLHGEPQWKLIAVTVGTRNHSQCLHRWRTVLRPGLAKGPWTAAEDEMLTNLVRQGDISNWGDVAAVITTRTCKQWPRAVAAPPESR 110
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BLAST of jgi.p|Trimin1|166320 vs. uniprot
Match: A0A836CHW8_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHW8_9STRA)

HSP 1 Score: 115 bits (289), Expect = 1.680e-31
Identity = 55/87 (63.22%), Postives = 61/87 (70.11%), Query Frame = 1 
Query:   34 WSAAENERLRRAVKLHGEPQWKLIAVTVGTRNHSQCLHRWRTVLRPGLAKGPWTAAEDEMLTNLVRQGDISNWGDVAAVITTRTCKQ 294
            W+A E+ERLR  V L GE QWK IA  VGTRNH QCL RW+ VLRPGL KG WT AEDE+L  LV  G+  NWG VAA +  RT KQ
Sbjct:    1 WTAEEDERLRHVVALRGESQWKRIAAEVGTRNHVQCLQRWKKVLRPGLKKGNWTDAEDELLARLVEAGNFKNWGVVAAQLAGRTSKQ 87
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BLAST of jgi.p|Trimin1|166320 vs. uniprot
Match: A0A835YSN1_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSN1_9STRA)

HSP 1 Score: 113 bits (282), Expect = 3.920e-30
Identity = 53/63 (84.13%), Postives = 54/63 (85.71%), Query Frame = 1 
Query:  106 AVTVGTRNHSQCLHRWRTVLRPGLAKGPWTAAEDEMLTNLVRQGDISNWGDVAAVITTRTCKQ 294
            A  V TRNH QCL RW+ VLRPGLAKGPWTA EDE L NLVRQGDISNWGDVAAVITTRTCKQ
Sbjct:    4 APQVETRNHVQCLQRWKKVLRPGLAKGPWTAEEDETLMNLVRQGDISNWGDVAAVITTRTCKQ 66
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BLAST of jgi.p|Trimin1|166320 vs. uniprot
Match: A0A835Z3R6_9STRA (Homeodomain-like protein (Fragment) n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3R6_9STRA)

HSP 1 Score: 105 bits (263), Expect = 7.550e-27
Identity = 49/90 (54.44%), Postives = 59/90 (65.56%), Query Frame = 1 
Query:   25 PSKWSAAENERLRRAVKLHGEPQWKLIAVTVGTRNHSQCLHRWRTVLRPGLAKGPWTAAEDEMLTNLVRQGDISNWGDVAAVITTRTCKQ 294
            P KW+  E+ERL  AV+ HG  +WK IA  VGTRNH QCL RW+ VLRP L KG WT  ED +LT+ V+ G   NWG VA  +  RT +Q
Sbjct:    9 PRKWAPDEDERLNAAVQAHGATKWKRIAAQVGTRNHVQCLQRWKKVLRPDLKKGDWTPEEDALLTDTVQSGTCKNWGKVALHLPNRTYRQ 98
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BLAST of jgi.p|Trimin1|166320 vs. uniprot
Match: A0A835Z2I1_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2I1_9STRA)

HSP 1 Score: 102 bits (253), Expect = 1.820e-25
Identity = 49/88 (55.68%), Postives = 59/88 (67.05%), Query Frame = 1 
Query:   31 KWSAAENERLRRAVKLHGEPQWKLIAVTVGTRNHSQCLHRWRTVLRPGLAKGPWTAAEDEMLTNLVRQGDISNWGDVAAVITTRTCKQ 294
            +W+A E+ERLR+AV+ HGE  WKLIA  VG+R+H QCL RW+ VLRPGL KG WTAAED  L   V      NW  V   +T RT +Q
Sbjct:    1 RWTAEEDERLRKAVQRHGEWHWKLIAADVGSRDHVQCLQRWKKVLRPGLRKGEWTAAEDARLARTVAACTPLNWSAVCKSLTGRTSRQ 88
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BLAST of jgi.p|Trimin1|166320 vs. uniprot
Match: A0A7S2UU49_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UU49_9STRA)

HSP 1 Score: 103 bits (258), Expect = 2.610e-24
Identity = 50/91 (54.95%), Postives = 62/91 (68.13%), Query Frame = 1 
Query:   22 LPSKWSAAENERLRRAVKLHGEPQWKLIAVTVGTRNHSQCLHRWRTVLRPGLAKGPWTAAEDEMLTNLVRQGDISNWGDVAAVITTRTCKQ 294
            +P KW+  E+E LR AV+ +GE  WK IA  VGTRNH QCL RW+ VL+PGL KG W+A ED  L +LV +G   NWG +AA +  RT KQ
Sbjct:   26 IPRKWTLVEDEELRHAVRKYGESNWKDIAREVGTRNHVQCLQRWKKVLKPGLVKGQWSALEDAKLVDLVGKG-FKNWGQLAAQMPGRTSKQ 115
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BLAST of jgi.p|Trimin1|166320 vs. uniprot
Match: D8LSJ8_ECTSI (Myb-like DNA-binding protein, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSJ8_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 5.560e-22
Identity = 51/94 (54.26%), Postives = 61/94 (64.89%), Query Frame = 1 
Query:   13 RRALPSKWSAAENERLRRAVKLHGEPQWKLIAVTVGTRNHSQCLHRWRTVLRPGLAKGPWTAAEDEMLTNLVRQGDISNWGDVAAVITTRTCKQ 294
            +R  P KWSA E+ RLR AV    E +WK IA  V TRNH QCL RW+ VL+PGL KG W+A ED+ L  LV +G   NWG VA+ +  RT KQ
Sbjct:   96 KRNKPVKWSAEEDRRLRDAVVRFSEARWKDIASLVETRNHVQCLQRWKKVLKPGLVKGQWSAEEDDRLVGLVEKG-FRNWGQVASFMDGRTSKQ 188
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BLAST of jgi.p|Trimin1|166320 vs. uniprot
Match: A0A7S2BP72_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BP72_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 1.240e-21
Identity = 42/79 (53.16%), Postives = 53/79 (67.09%), Query Frame = 1 
Query:   25 PSKWSAAENERLRRAVKLHGEPQWKLIAVTVGTRNHSQCLHRWRTVLRPGLAKGPWTAAEDEMLTNLVRQGDISNWGDV 261
            P +W+  E+++LR AVK  GE  WK IA  V +RNH QCL RW+ VL+PGL KG W+A ED ML  LV +G   NWG +
Sbjct:   33 PRRWTQEEDDKLRDAVKEFGEVNWKAIAERVASRNHVQCLQRWKKVLKPGLVKGQWSAQEDAMLVTLVSEG-FKNWGQL 110
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BLAST of jgi.p|Trimin1|166320 vs. uniprot
Match: D7FQG8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQG8_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 1.420e-21
Identity = 49/94 (52.13%), Postives = 61/94 (64.89%), Query Frame = 1 
Query:   13 RRALPSKWSAAENERLRRAVKLHGEPQWKLIAVTVGTRNHSQCLHRWRTVLRPGLAKGPWTAAEDEMLTNLVRQGDISNWGDVAAVITTRTCKQ 294
            RR  P +WS  E+ERLR AV+ +    WK IA  V TRNH QCL RW+ VL PGL KG WT  ED++L ++V +G   NWG ++A I  RT KQ
Sbjct:   13 RRPHPRRWSLEEDERLRAAVERYHGTNWKEIAAEVKTRNHVQCLQRWKKVLTPGLVKGQWTPEEDQLLVSIVNEGH-KNWGSLSARIPGRTSKQ 105
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BLAST of jgi.p|Trimin1|166320 vs. uniprot
Match: A0A6H5K458_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K458_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 7.260e-21
Identity = 46/90 (51.11%), Postives = 59/90 (65.56%), Query Frame = 1 
Query:   25 PSKWSAAENERLRRAVKLHGEPQWKLIAVTVGTRNHSQCLHRWRTVLRPGLAKGPWTAAEDEMLTNLVRQGDISNWGDVAAVITTRTCKQ 294
            P +WS  E+ERLR AV+ +    WK IA  V TRNH QCL RW+ VL PGL KG WT  ED++L ++V +G   NWG ++A +  RT KQ
Sbjct:   68 PRRWSPEEDERLRAAVERYHGTSWKEIAAEVKTRNHVQCLQRWKKVLTPGLVKGQWTPEEDKLLVSIVNEGH-KNWGSLSARVPGRTSKQ 156
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|166320 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YSE1_9STRA5.280e-76100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CHW8_9STRA1.680e-3163.22Homeodomain-like protein (Fragment) n=1 Tax=Tribon... [more]
A0A835YSN1_9STRA3.920e-3084.13Homeodomain-like protein (Fragment) n=1 Tax=Tribon... [more]
A0A835Z3R6_9STRA7.550e-2754.44Homeodomain-like protein (Fragment) n=2 Tax=Tribon... [more]
A0A835Z2I1_9STRA1.820e-2555.68Homeodomain-like protein (Fragment) n=1 Tax=Tribon... [more]
A0A7S2UU49_9STRA2.610e-2454.95Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
D8LSJ8_ECTSI5.560e-2254.26Myb-like DNA-binding protein, putative n=2 Tax=Ect... [more]
A0A7S2BP72_9STRA1.240e-2153.16Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
D7FQG8_ECTSI1.420e-2152.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K458_9PHAE7.260e-2151.11MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_43contigContig_43:676578..678542 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|166320|e_gw1.43.15.1
DescriptionRNA polymerase II transcription regulator recruiting activity
COG categoryADK
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5147@1|root,KOG0048@2759|Eukaryota
Evalue6.64e-23
Seed ortholog157072.XP_008867199.1
Hectar predicted targeting categoryother localisation
TranscriptId166642
TrackFilteredModels1
ProteinId166320
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|166320gene_13762Tribonema minus UTEX_B_3156 geneContig_43 676578..678542 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13762_1exon_13762_1Tribonema minus UTEX_B_3156 exonContig_43 676578..676691 +
exon_13762_2exon_13762_2Tribonema minus UTEX_B_3156 exonContig_43 678324..678542 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13762CDS_13762Tribonema minus UTEX_B_3156 CDSContig_43 676578..676691 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|166320Trimin1|166320|e_gw1.43.15.1Tribonema minus UTEX_B_3156 polypeptideContig_43 676578..678542 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13762 ID=mRNA_13762|Name=jgi.p|Trimin1|166320|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=333bp|location=Sequence derived from alignment at Contig_43:676578..678542+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCAGCGGCGGCGCGCGCTGCCCTCGAAGTGGAGCGCCGCCGAGAA
CGAGCGGCTGAGACGTGCTGTCAAGCTGCACGGCGAGCCCCAGTGGAAGC
TCATCGCGGTAACTGTGGGGACGCGCAACCACTCCCAGTGCCTGCATCGC
TGGAGAACGGTTCTGCGGCCCGGTCTTGCCAAGGGTCCCTGGACTGCAGC
GGAGGATGAAATGCTCACGAACCTTGTCAGGCAGGGGGACATCAGCAACT
GGGGGGACGTCGCGGCTGTTATCACGACGCGCACATGCAAGCAGTGGCCG
CGAGCGGTGGCAGCACCACCTGAATCCCGGTGA
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protein sequence of jgi.p|Trimin1|166320

>Trimin1|166320|e_gw1.43.15.1 ID=Trimin1|166320|e_gw1.43.15.1|Name=jgi.p|Trimin1|166320|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=111bp
MAQRRRALPSKWSAAENERLRRAVKLHGEPQWKLIAVTVGTRNHSQCLHR
WRTVLRPGLAKGPWTAAEDEMLTNLVRQGDISNWGDVAAVITTRTCKQWP
RAVAAPPESR*
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mRNA from alignment at Contig_43:676578..678542+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13762 ID=mRNA_13762|Name=jgi.p|Trimin1|166320|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1965bp|location=Sequence derived from alignment at Contig_43:676578..678542+ (Tribonema minus UTEX_B_3156 )
ATGGCGCAGCGGCGGCGCGCGCTGCCCTCGAAGTGGAGCGCCGCCGAGAA
CGAGCGGCTGAGACGTGCTGTCAAGCTGCACGGCGAGCCCCAGTGGAAGC
TCATCGCGGTAACTGTGAGTGTCACTCTTTGAAGTCATTGGTACTGCAAT
GTAAATTTGTTGGCTGAGGAATGCCATCAAGCTGCACGGCGAGCCCCAGT
AGAAGCTCATCGCGTCCTTTGCGAGTCACTCTTTGAAGTTGGTCAAACGC
GTACGTTGTCTTTTTGTTGAAGTTCTTGGCTGAGACGTGCTGTCAAGCTG
CACGGCGAGCTCCAGTGGAACCTCATTGCGGTAACTGTGAGTCACTCTTT
GAAGTCGGTTAAACTGTTTCTTTGATAACTTTTGAAGTTGTTGGCTGAGA
CATGTTGTCAAGCTGCACGGCGAGTCCCAGTGGAAGCTCATCGAACGCGG
TGTCCGTGAGTCACTCTTTGAAGTCAGTCGTACTGCTATCTGAAGTTCTT
GGCTGAGGACTGCTGTCAAGCTACACGGCGAGCCCTAAGGAAGCTCATCG
CGGTTTCCGCGAGTCATTCCTTGAAGTTGGTTGAGCTGGGTTTCTGACTT
TTCTGAAGTGCTTGGCTGGGCAAGCTCCGCTACAGCTGTGCGCCTGGCGT
AACGCAGTGGAAGCTCGTTGCGTGCTGCGTGAGCCACTCTCTTAAGGTGA
TTGAACTTGCAGTTCTACTTTTTGTTGAAGTTCCTGGCTGGGACGTGCCG
TCAAGCTGCTCGATGAACCCCAGTGGAAGCTCATTGCGGTTTCGGTGAGT
CACTCTTGAAGTCAGTCGAACTGGTATTCTGAGTTTTTTGAAGTTGTTGA
CTGGCTGAGCGCTGCTGCAGCTGCGCGCCTGGTGTGGCGCAGTGAAAGCT
CATCGCGTGCTTGTGAGTCTTGCTTTGAAGTGCTGATTGGCTTTCTTGAC
ATTGTTGGCTGGCTGACCAGCACGGGGTGTGCTGCTTCAATGTGGCAAAC
TCGAATTGCTGTACTGAGCTAGTCAGCTGCTGGGCGCCGGTGCTGATCAG
CGCTGAATGTCTCTCACAAGAGCCGCCAAGGCTTACCTAGAGCGAGTGTT
AGGGTTGCTGTCAGGTGCGGACACACACACATTTGTCGTGCTCACTTGGG
CCAGCAGGCCTGGGCAACCGCGTCCAGTGCCTGCATCGCTGGATGCATGT
TTTGCAGGCCGTTCTTGGCAGCAGCCAGGGTCCGGATAACGGTTGCGTTT
CCGACCACCATTGAAGATAGGCATGAGACTGGCTGGCTATGGGGAATCTC
ATAACTTCAACTAAATCACAGACTCGGTGACGCACCGCAGGTGGGAACGC
GCCACTCCCAGTGTCGTCATCGCTGGAGAAAGGTGCTGCAGGCCATTGCT
GCCAATGGCCTGAATTAGCATAGCGGTTGCGGTTACGGCGATGCTTATTG
TTAGGCTAGCTCATAACTTAAACTAAATCACGCTCCTGGTGCCGCAGGTG
GGCACGCGCAGCCACTCCCAGTGCCTGCAGCGCCGGCAACAGATTCTGCG
GCCTGTGCTCACAAAAAGGCTACAGGGTCATGCTTGGGGTCACGAATCCC
GGAAATGATTCTTTCGTCCAGATTAGCAATCACATCAGAGACAATCATAA
CTTCAACTGAATCACCAAAACTTCAACTGATTCACCACAATTTCAACTGA
ATAGCCATAACTTCAACTATATCTCGCTCTCGGTGACGCACCGCAGGTGG
GGACGCGCAACCACTCCCAGTGCCTGCATCGCTGGAGAACGGTTCTGCGG
CCCGGTCTTGCCAAGGGTCCCTGGACTGCAGCGGAGGATGAAATGCTCAC
GAACCTTGTCAGGCAGGGGGACATCAGCAACTGGGGGGACGTCGCGGCTG
TTATCACGACGCGCACATGCAAGCAGTGGCCGCGAGCGGTGGCAGCACCA
CCTGAATCCCGGTGA
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Coding sequence (CDS) from alignment at Contig_43:676578..678542+

>mRNA_13762 ID=mRNA_13762|Name=jgi.p|Trimin1|166320|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=333bp|location=Sequence derived from alignment at Contig_43:676578..678542+ (Tribonema minus UTEX_B_3156 )
ATGGCGCAGCGGCGGCGCGCGCTGCCCTCGAAGTGGAGCGCCGCCGAGAA
CGAGCGGCTGAGACGTGCTGTCAAGCTGCACGGCGAGCCCCAGTGGAAGC
TCATCGCGGTAACTGTGGGGACGCGCAACCACTCCCAGTGCCTGCATCGC
TGGAGAACGGTTCTGCGGCCCGGTCTTGCCAAGGGTCCCTGGACTGCAGC
GGAGGATGAAATGCTCACGAACCTTGTCAGGCAGGGGGACATCAGCAACT
GGGGGGACGTCGCGGCTGTTATCACGACGCGCACATGCAAGCAGTGGCCG
CGAGCGGTGGCAGCACCACCTGAATCCCGGTGA
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