mRNA_13761 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|137248
Unique NamemRNA_13761
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|137248 vs. uniprot
Match: A0A835YSN1_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSN1_9STRA)

HSP 1 Score: 268 bits (684), Expect = 3.380e-91
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 1
Query:    1 LGDAPQVETRNHVQCLQRWKKVLRPGLAKGPWTAEEDETLMNLVRQGDISNWGDVAAVITTRTCKQCRERWQHHLNPDLRRGDYSPEEDAAILAGYERHGNRWATIIQDVPGRTAPSIRSRY 366
            LGDAPQVETRNHVQCLQRWKKVLRPGLAKGPWTAEEDETLMNLVRQGDISNWGDVAAVITTRTCKQCRERWQHHLNPDLRRGDYSPEEDAAILAGYERHGNRWATIIQDVPGRTAPSIRSRY
Sbjct:    1 LGDAPQVETRNHVQCLQRWKKVLRPGLAKGPWTAEEDETLMNLVRQGDISNWGDVAAVITTRTCKQCRERWQHHLNPDLRRGDYSPEEDAAILAGYERHGNRWATIIQDVPGRTAPSIRSRY 122          
BLAST of jgi.p|Trimin1|137248 vs. uniprot
Match: A0A835Z2I1_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2I1_9STRA)

HSP 1 Score: 156 bits (394), Expect = 1.100e-46
Identity = 70/119 (58.82%), Postives = 85/119 (71.43%), Query Frame = 1
Query:   10 APQVETRNHVQCLQRWKKVLRPGLAKGPWTAEEDETLMNLVRQGDISNWGDVAAVITTRTCKQCRERWQHHLNPDLRRGDYSPEEDAAILAGYERHGNRWATIIQDVPGRTAPSIRSRY 366
            A  V +R+HVQCLQRWKKVLRPGL KG WTA ED  L   V      NW  V   +T RT +QCRERW+HHL+PDL+R +Y+P+EDAAILA + +HGNRW  I   VPGRT  SI++R+
Sbjct:   26 AADVGSRDHVQCLQRWKKVLRPGLRKGEWTAAEDARLARTVAACTPLNWSAVCKSLTGRTSRQCRERWKHHLDPDLKRTEYTPDEDAAILASHHQHGNRWRQIALSVPGRTENSIKARF 144          
BLAST of jgi.p|Trimin1|137248 vs. uniprot
Match: A0A836CG12_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG12_9STRA)

HSP 1 Score: 150 bits (378), Expect = 9.820e-45
Identity = 67/108 (62.04%), Postives = 80/108 (74.07%), Query Frame = 1
Query:   43 CLQRWKKVLRPGLAKGPWTAEEDETLMNLVRQGDISNWGDVAAVITTRTCKQCRERWQHHLNPDLRRGDYSPEEDAAILAGYERHGNRWATIIQDVPGRTAPSIRSRY 366
            CLQRWKKVLRPGL KG WT EED  L  LV +G   NWG +A+ + +RT KQCRERWQHHL+P ++RG YS  ED AI AG+ R GNRW+ I  DVPGRT  SI++R+
Sbjct:    1 CLQRWKKVLRPGLRKGQWTREEDAKLARLVARGGFKNWGVLASHMASRTSKQCRERWQHHLDPAIKRGAYSAAEDEAIRAGHARLGNRWSQIALDVPGRTENSIKARF 108          
BLAST of jgi.p|Trimin1|137248 vs. uniprot
Match: A0A835Z3R6_9STRA (Homeodomain-like protein (Fragment) n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3R6_9STRA)

HSP 1 Score: 150 bits (379), Expect = 2.950e-44
Identity = 69/120 (57.50%), Postives = 84/120 (70.00%), Query Frame = 1
Query:   10 APQVETRNHVQCLQRWKKVLRPGLAKGPWTAEEDETLMNLVRQGDISNWGDVAAVITTRTCKQCRERWQHHLNPDLRRGDYSPEEDAAILAGYERHGNRWATIIQD-VPGRTAPSIRSRY 366
            A QV TRNHVQCLQRWKKVLRP L KG WT EED  L + V+ G   NWG VA  +  RT +QC+ RWQHHL+PD++RG ++  EDA IL G++R GNRW  I +  +PGR   +IR RY
Sbjct:   36 AAQVGTRNHVQCLQRWKKVLRPDLKKGDWTPEEDALLTDTVQSGTCKNWGKVALHLPNRTYRQCQLRWQHHLDPDIKRGSFTAAEDALILEGFKRFGNRWKHIARKHLPGRIDYTIRGRY 155          
BLAST of jgi.p|Trimin1|137248 vs. uniprot
Match: A0A662WMC1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WMC1_9STRA)

HSP 1 Score: 142 bits (359), Expect = 1.920e-40
Identity = 68/119 (57.14%), Postives = 78/119 (65.55%), Query Frame = 1
Query:   10 APQVETRNHVQCLQRWKKVLRPGLAKGPWTAEEDETLMNLVRQGDISNWGDVAAVITTRTCKQCRERWQHHLNPDLRRGDYSPEEDAAILAGYERHGNRWATIIQDVPGRTAPSIRSRY 366
            A  V  RNH QCLQRW KVL PGL KG W+  EDE L  LV   D  NWGDVAA I  RT KQCRERW +HL+P + RG YSPEED  IL    R GNRW+ I   +PGRT  +++ R+
Sbjct:   32 AAHVAGRNHTQCLQRWTKVLAPGLVKGHWSPHEDELLRRLVA-ADQKNWGDVAAKIPGRTSKQCRERWHNHLDPAIVRGAYSPEEDRLILEAQARLGNRWSVIAAMLPGRTEDAVKIRW 149          
BLAST of jgi.p|Trimin1|137248 vs. uniprot
Match: A0A7S2UU49_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UU49_9STRA)

HSP 1 Score: 144 bits (364), Expect = 1.060e-39
Identity = 64/119 (53.78%), Postives = 86/119 (72.27%), Query Frame = 1
Query:   10 APQVETRNHVQCLQRWKKVLRPGLAKGPWTAEEDETLMNLVRQGDISNWGDVAAVITTRTCKQCRERWQHHLNPDLRRGDYSPEEDAAILAGYERHGNRWATIIQDVPGRTAPSIRSRY 366
            A +V TRNHVQCLQRWKKVL+PGL KG W+A ED  L++LV +G   NWG +AA +  RT KQCRERW HHL+P +++G+Y+ EED  IL      GN+W+ I + +PGRT  +++ R+
Sbjct:   54 AREVGTRNHVQCLQRWKKVLKPGLVKGQWSALEDAKLVDLVGKG-FKNWGQLAAQMPGRTSKQCRERWSHHLDPSVKKGEYTTEEDNTILRLQSELGNKWSEIAKHLPGRTENAVKIRW 171          
BLAST of jgi.p|Trimin1|137248 vs. uniprot
Match: D0NJN5_PHYIT (Myb-like DNA-binding protein, putative n=2 Tax=Phytophthora TaxID=4783 RepID=D0NJN5_PHYIT)

HSP 1 Score: 141 bits (356), Expect = 1.110e-39
Identity = 66/119 (55.46%), Postives = 79/119 (66.39%), Query Frame = 1
Query:   10 APQVETRNHVQCLQRWKKVLRPGLAKGPWTAEEDETLMNLVRQGDISNWGDVAAVITTRTCKQCRERWQHHLNPDLRRGDYSPEEDAAILAGYERHGNRWATIIQDVPGRTAPSIRSRY 366
            A +V  RNH QCLQRW KVL PGL KG W  EED+ L  LV +G   NWG VA  I  RT KQCRERW +HL+P + RG+YSPEED  IL    R GNRW+ I   +PGRT  +++ R+
Sbjct:  109 AEEVPGRNHTQCLQRWTKVLAPGLVKGHWRPEEDDLLKELVAEGR-KNWGQVATRIPGRTSKQCRERWYNHLDPSIIRGEYSPEEDRMILDAQARLGNRWSAIAAMLPGRTEDAVKIRW 226          
BLAST of jgi.p|Trimin1|137248 vs. uniprot
Match: K3WIN4_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WIN4_GLOUD)

HSP 1 Score: 146 bits (368), Expect = 4.350e-39
Identity = 64/119 (53.78%), Postives = 84/119 (70.59%), Query Frame = 1
Query:   10 APQVETRNHVQCLQRWKKVLRPGLAKGPWTAEEDETLMNLVRQGDISNWGDVAAVITTRTCKQCRERWQHHLNPDLRRGDYSPEEDAAILAGYERHGNRWATIIQDVPGRTAPSIRSRY 366
            A +V  RNH QCLQRW KVL+PGL KG W+ EED  L  +V QG   +WG+VAA I  RT KQCRERW++HL+P + +G ++PEED  I  GYE +GNRW  I + +PGRT  +++ R+
Sbjct:   74 ASRVPGRNHAQCLQRWNKVLKPGLVKGHWSYEEDSILERMVLQG-CHSWGEVAAHIPGRTAKQCRERWRNHLDPSINKGPFTPEEDVTIQQGYETYGNRWTQIAELLPGRTEDAVKLRW 191          
BLAST of jgi.p|Trimin1|137248 vs. uniprot
Match: A0A024UVV8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UVV8_9STRA)

HSP 1 Score: 145 bits (366), Expect = 4.570e-39
Identity = 61/119 (51.26%), Postives = 80/119 (67.23%), Query Frame = 1
Query:   10 APQVETRNHVQCLQRWKKVLRPGLAKGPWTAEEDETLMNLVRQGDISNWGDVAAVITTRTCKQCRERWQHHLNPDLRRGDYSPEEDAAILAGYERHGNRWATIIQDVPGRTAPSIRSRY 366
            A +V  RNH QCLQRW KVL+PGL KG W A+EDE L+ LV+     NWG+++  I  RT KQCRERW++HL+P + +G YS +ED  + A Y   GNRW  I   +PGRT  S++ R+
Sbjct:   67 AERVPGRNHAQCLQRWNKVLKPGLVKGHWAADEDENLVRLVQNSTTVNWGEISKSIEGRTAKQCRERWKNHLDPSINKGPYSSDEDMLLAAAYAELGNRWTQIANRLPGRTEDSVKMRW 185          
BLAST of jgi.p|Trimin1|137248 vs. uniprot
Match: D0N660_PHYIT (Myb-like DNA-binding protein, putative n=9 Tax=Phytophthora TaxID=4783 RepID=D0N660_PHYIT)

HSP 1 Score: 145 bits (366), Expect = 5.670e-39
Identity = 64/119 (53.78%), Postives = 85/119 (71.43%), Query Frame = 1
Query:   10 APQVETRNHVQCLQRWKKVLRPGLAKGPWTAEEDETLMNLVRQGDISNWGDVAAVITTRTCKQCRERWQHHLNPDLRRGDYSPEEDAAILAGYERHGNRWATIIQDVPGRTAPSIRSRY 366
            A +V+ RNH QCLQRW KVL+PGL KG W+ EED TL  +V QG   +WG+VAA I  RT KQCRERW++HL+P + +  ++PEED  I  G+E+ GNRW  I + +PGRT  +I+ R+
Sbjct:   62 ASRVDGRNHAQCLQRWNKVLKPGLVKGHWSFEEDSTLEQMVLQG-CHSWGEVAAHIPGRTAKQCRERWRNHLDPSINKSPFTPEEDTIIQEGFEKMGNRWTQIAELLPGRTEDAIKLRW 179          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|137248 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YSN1_9STRA3.380e-91100.00Homeodomain-like protein (Fragment) n=1 Tax=Tribon... [more]
A0A835Z2I1_9STRA1.100e-4658.82Homeodomain-like protein (Fragment) n=1 Tax=Tribon... [more]
A0A836CG12_9STRA9.820e-4562.04Homeodomain-like protein (Fragment) n=1 Tax=Tribon... [more]
A0A835Z3R6_9STRA2.950e-4457.50Homeodomain-like protein (Fragment) n=2 Tax=Tribon... [more]
A0A662WMC1_9STRA1.920e-4057.14Uncharacterized protein (Fragment) n=1 Tax=Nothoph... [more]
A0A7S2UU49_9STRA1.060e-3953.78Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
D0NJN5_PHYIT1.110e-3955.46Myb-like DNA-binding protein, putative n=2 Tax=Phy... [more]
K3WIN4_GLOUD4.350e-3953.78Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A024UVV8_9STRA4.570e-3951.26Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
D0N660_PHYIT5.670e-3953.78Myb-like DNA-binding protein, putative n=9 Tax=Phy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_43contigContig_43:666628..668093 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|137248|gw1.43.37.1
DescriptionMyb-like DNA-binding domain
COG categoryK
Max annot lvl121069|Pythiales
EggNOG OGsCOG5147@1|root,KOG0048@2759|Eukaryota,1MGGC@121069|Pythiales
Evalue7.13e-40
Seed ortholog65071.PYU1_T004826
Hectar predicted targeting categoryother localisation
TranscriptId137570
TrackFilteredModels1
ProteinId137248
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|137248gene_13761Tribonema minus UTEX_B_3156 geneContig_43 666628..668093 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|137248Trimin1|137248|gw1.43.37.1Tribonema minus UTEX_B_3156 polypeptideContig_43 666628..668093 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13761_2exon_13761_2Tribonema minus UTEX_B_3156 exonContig_43 666628..666761 -
exon_13761_1exon_13761_1Tribonema minus UTEX_B_3156 exonContig_43 667862..668093 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13761CDS_13761Tribonema minus UTEX_B_3156 CDSContig_43 667862..668093 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13761 ID=mRNA_13761|Name=jgi.p|Trimin1|137248|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=366bp|location=Sequence derived from alignment at Contig_43:666628..668093- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTCGGTGACGCACCGCAGGTGGAGACGCGCAACCACGTCCAGTGCCTGCA
GCGCTGGAAGAAGGTTCTGCGGCCCGGTCTTGCCAAGGGGCCCTGGACAG
CGGAGGAGGACGAAACGCTCATGAACCTTGTCAGGCAGGGGGACATCAGC
AACTGGGGAGACGTGGCTGCGGTCATCACCACACGCACGTGCAAGCAGTG
CCGCGAGCGGTGGCAACACCACCTCAACCCCGACCTCAGGCGCGGCGACT
ACTCGCCGGAGGAGGACGCCGCCATCCTGGCCGGCTACGAGCGCCACGGC
AACCGCTGGGCGACCATCATTCAGGACGTCCCCGGCCGCACGGCCCCATC
CATCAGGTCCCGCTAC
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protein sequence of jgi.p|Trimin1|137248

>Trimin1|137248|gw1.43.37.1 ID=Trimin1|137248|gw1.43.37.1|Name=jgi.p|Trimin1|137248|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=122bp
LGDAPQVETRNHVQCLQRWKKVLRPGLAKGPWTAEEDETLMNLVRQGDIS
NWGDVAAVITTRTCKQCRERWQHHLNPDLRRGDYSPEEDAAILAGYERHG
NRWATIIQDVPGRTAPSIRSRY
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mRNA from alignment at Contig_43:666628..668093-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13761 ID=mRNA_13761|Name=jgi.p|Trimin1|137248|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1466bp|location=Sequence derived from alignment at Contig_43:666628..668093- (Tribonema minus UTEX_B_3156 )
CTCGGTGACGCACCGCAGGTGGAGACGCGCAACCACGTCCAGTGCCTGCA GCGCTGGAAGAAGGTTCTGCGGCCCGGTCTTGCCAAGGGGCCCTGGACAG CGGAGGAGGACGAAACGCTCATGAACCTTGTCAGGCAGGGGGACATCAGC AACTGGGGAGACGTGGCTGCGGTCATCACCACACGCACGTGCAAGCAGTG CCGCGAGCGGTGGCAACACCACCTCAACCCCGGTGAGCACTGCTGCTGAA GTGCATTCAGACGGCACATGTCTGGAGATCTGAGCACTGCTGCTGTCATC ACCAGACTCCACGCGAGCGGTGGCAGCGCCTGTCGCGCACTGCCGCTGCG TCAAATTCCTGGTGAGCGCTGCTGCTGCGGTGCAACGTCTCTTCAGCCCT GCTGCTGCTGCTGCTGCTTTGAAATTCCTTTGAGCGCTGCTGCTGTGCTG TCATCGCCACGCGCACGTGCAAATACTGCCGCGAGCGGCGCCAGGTTCAA GTCCTGGTGAGCGCTGCTGCTGCTGCTGCTGCTGCTGCGGCGGCGGTGGC GGCGACGACACACGCATGATGACATTCGCACGATGACACCGCACGCATGC GCAAGCACTACTGTTGCGAGTGGTGGCAGCACCATCTTAACCGCGGTGAG CCCCGCTGTCGCCGCTACTGCTGCTGCTGCTGCGGCGGCGGCCGTGATGA AATGCGTATGAGCACTGCTGCTGTCATTGCCATACTCATGTGCATGTTCG CCGAGAGCGGTGGCAGCACCACCTCAACCCTGATGAGCGGCGCTGCTGCT GCTGTCGCCGCCGCCGCTGCTGCTGCTGCTGCTGCTGCTGTAATGAGAAG CCAGTACCAGAGTCGCATGTCCTTGCCAAATCACTCGCCACCTACTACCC CTCCCCGCGCACAGCACCGAATTCACTCATCTCTGTCCTCAACTTCACCT GCCCCTCCCCCCCCCAAATGCAGAGCAAACCTCAGACGAGGCGTCCAGGA GGACGCCGCCATCCTGGCTGGCTAGGGTTTGGGCTAGCAATACATGACGT CGCTTTGAACCTGACATCTGTCTCTCCTGACGCCTGAGCAGCTGATGCGG CACCGCGTTTCATCAACCACTCGAACTTCCTTCACTCCCCTGCCAACTTC AACACAGACCTCAGGCGCGGCGACTACTTGCAAGAGGAAGACGCCACCGT CCTGGCCTGCAAGGGCTAGGGCTAGCAGTGCAGATCAGTCATGGTGTTTC TGTTTCAAGGCCCAACTTTTCCATCCCCTGCGCCTCCTCACTCTCTTGCA CTTCCTCTTCACCCCTGCCAACTTGAACACAGACCTCAGGCGCGGCGACT ACTCGCCGGAGGAGGACGCCGCCATCCTGGCCGGCTACGAGCGCCACGGC AACCGCTGGGCGACCATCATTCAGGACGTCCCCGGCCGCACGGCCCCATC CATCAGGTCCCGCTAC
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Coding sequence (CDS) from alignment at Contig_43:666628..668093-

>mRNA_13761 ID=mRNA_13761|Name=jgi.p|Trimin1|137248|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=366bp|location=Sequence derived from alignment at Contig_43:666628..668093- (Tribonema minus UTEX_B_3156 )
CTCGGTGACGCACCGCAGGTGGAGACGCGCAACCACGTCCAGTGCCTGCA
GCGCTGGAAGAAGGTTCTGCGGCCCGGTCTTGCCAAGGGGCCCTGGACAG
CGGAGGAGGACGAAACGCTCATGAACCTTGTCAGGCAGGGGGACATCAGC
AACTGGGGAGACGTGGCTGCGGTCATCACCACACGCACGTGCAAGCAGTG
CCGCGAGCGGTGGCAACACCACCTCAACCCCGACCTCAGGCGCGGCGACT
ACTCGCCGGAGGAGGACGCCGCCATCCTGGCCGGCTACGAGCGCCACGGC
AACCGCTGGGCGACCATCATTCAGGACGTCCCCGGCCGCACGGCCCCATC
CATCAGGTCCCGCTAC
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