mRNA_13761 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|137248 vs. uniprot
Match: A0A835YSN1_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSN1_9STRA) HSP 1 Score: 268 bits (684), Expect = 3.380e-91 Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 1 Query: 1 LGDAPQVETRNHVQCLQRWKKVLRPGLAKGPWTAEEDETLMNLVRQGDISNWGDVAAVITTRTCKQCRERWQHHLNPDLRRGDYSPEEDAAILAGYERHGNRWATIIQDVPGRTAPSIRSRY 366 LGDAPQVETRNHVQCLQRWKKVLRPGLAKGPWTAEEDETLMNLVRQGDISNWGDVAAVITTRTCKQCRERWQHHLNPDLRRGDYSPEEDAAILAGYERHGNRWATIIQDVPGRTAPSIRSRY Sbjct: 1 LGDAPQVETRNHVQCLQRWKKVLRPGLAKGPWTAEEDETLMNLVRQGDISNWGDVAAVITTRTCKQCRERWQHHLNPDLRRGDYSPEEDAAILAGYERHGNRWATIIQDVPGRTAPSIRSRY 122
BLAST of jgi.p|Trimin1|137248 vs. uniprot
Match: A0A835Z2I1_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2I1_9STRA) HSP 1 Score: 156 bits (394), Expect = 1.100e-46 Identity = 70/119 (58.82%), Postives = 85/119 (71.43%), Query Frame = 1 Query: 10 APQVETRNHVQCLQRWKKVLRPGLAKGPWTAEEDETLMNLVRQGDISNWGDVAAVITTRTCKQCRERWQHHLNPDLRRGDYSPEEDAAILAGYERHGNRWATIIQDVPGRTAPSIRSRY 366 A V +R+HVQCLQRWKKVLRPGL KG WTA ED L V NW V +T RT +QCRERW+HHL+PDL+R +Y+P+EDAAILA + +HGNRW I VPGRT SI++R+ Sbjct: 26 AADVGSRDHVQCLQRWKKVLRPGLRKGEWTAAEDARLARTVAACTPLNWSAVCKSLTGRTSRQCRERWKHHLDPDLKRTEYTPDEDAAILASHHQHGNRWRQIALSVPGRTENSIKARF 144
BLAST of jgi.p|Trimin1|137248 vs. uniprot
Match: A0A836CG12_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG12_9STRA) HSP 1 Score: 150 bits (378), Expect = 9.820e-45 Identity = 67/108 (62.04%), Postives = 80/108 (74.07%), Query Frame = 1 Query: 43 CLQRWKKVLRPGLAKGPWTAEEDETLMNLVRQGDISNWGDVAAVITTRTCKQCRERWQHHLNPDLRRGDYSPEEDAAILAGYERHGNRWATIIQDVPGRTAPSIRSRY 366 CLQRWKKVLRPGL KG WT EED L LV +G NWG +A+ + +RT KQCRERWQHHL+P ++RG YS ED AI AG+ R GNRW+ I DVPGRT SI++R+ Sbjct: 1 CLQRWKKVLRPGLRKGQWTREEDAKLARLVARGGFKNWGVLASHMASRTSKQCRERWQHHLDPAIKRGAYSAAEDEAIRAGHARLGNRWSQIALDVPGRTENSIKARF 108
BLAST of jgi.p|Trimin1|137248 vs. uniprot
Match: A0A835Z3R6_9STRA (Homeodomain-like protein (Fragment) n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3R6_9STRA) HSP 1 Score: 150 bits (379), Expect = 2.950e-44 Identity = 69/120 (57.50%), Postives = 84/120 (70.00%), Query Frame = 1 Query: 10 APQVETRNHVQCLQRWKKVLRPGLAKGPWTAEEDETLMNLVRQGDISNWGDVAAVITTRTCKQCRERWQHHLNPDLRRGDYSPEEDAAILAGYERHGNRWATIIQD-VPGRTAPSIRSRY 366 A QV TRNHVQCLQRWKKVLRP L KG WT EED L + V+ G NWG VA + RT +QC+ RWQHHL+PD++RG ++ EDA IL G++R GNRW I + +PGR +IR RY Sbjct: 36 AAQVGTRNHVQCLQRWKKVLRPDLKKGDWTPEEDALLTDTVQSGTCKNWGKVALHLPNRTYRQCQLRWQHHLDPDIKRGSFTAAEDALILEGFKRFGNRWKHIARKHLPGRIDYTIRGRY 155
BLAST of jgi.p|Trimin1|137248 vs. uniprot
Match: A0A662WMC1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WMC1_9STRA) HSP 1 Score: 142 bits (359), Expect = 1.920e-40 Identity = 68/119 (57.14%), Postives = 78/119 (65.55%), Query Frame = 1 Query: 10 APQVETRNHVQCLQRWKKVLRPGLAKGPWTAEEDETLMNLVRQGDISNWGDVAAVITTRTCKQCRERWQHHLNPDLRRGDYSPEEDAAILAGYERHGNRWATIIQDVPGRTAPSIRSRY 366 A V RNH QCLQRW KVL PGL KG W+ EDE L LV D NWGDVAA I RT KQCRERW +HL+P + RG YSPEED IL R GNRW+ I +PGRT +++ R+ Sbjct: 32 AAHVAGRNHTQCLQRWTKVLAPGLVKGHWSPHEDELLRRLVA-ADQKNWGDVAAKIPGRTSKQCRERWHNHLDPAIVRGAYSPEEDRLILEAQARLGNRWSVIAAMLPGRTEDAVKIRW 149
BLAST of jgi.p|Trimin1|137248 vs. uniprot
Match: A0A7S2UU49_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UU49_9STRA) HSP 1 Score: 144 bits (364), Expect = 1.060e-39 Identity = 64/119 (53.78%), Postives = 86/119 (72.27%), Query Frame = 1 Query: 10 APQVETRNHVQCLQRWKKVLRPGLAKGPWTAEEDETLMNLVRQGDISNWGDVAAVITTRTCKQCRERWQHHLNPDLRRGDYSPEEDAAILAGYERHGNRWATIIQDVPGRTAPSIRSRY 366 A +V TRNHVQCLQRWKKVL+PGL KG W+A ED L++LV +G NWG +AA + RT KQCRERW HHL+P +++G+Y+ EED IL GN+W+ I + +PGRT +++ R+ Sbjct: 54 AREVGTRNHVQCLQRWKKVLKPGLVKGQWSALEDAKLVDLVGKG-FKNWGQLAAQMPGRTSKQCRERWSHHLDPSVKKGEYTTEEDNTILRLQSELGNKWSEIAKHLPGRTENAVKIRW 171
BLAST of jgi.p|Trimin1|137248 vs. uniprot
Match: D0NJN5_PHYIT (Myb-like DNA-binding protein, putative n=2 Tax=Phytophthora TaxID=4783 RepID=D0NJN5_PHYIT) HSP 1 Score: 141 bits (356), Expect = 1.110e-39 Identity = 66/119 (55.46%), Postives = 79/119 (66.39%), Query Frame = 1 Query: 10 APQVETRNHVQCLQRWKKVLRPGLAKGPWTAEEDETLMNLVRQGDISNWGDVAAVITTRTCKQCRERWQHHLNPDLRRGDYSPEEDAAILAGYERHGNRWATIIQDVPGRTAPSIRSRY 366 A +V RNH QCLQRW KVL PGL KG W EED+ L LV +G NWG VA I RT KQCRERW +HL+P + RG+YSPEED IL R GNRW+ I +PGRT +++ R+ Sbjct: 109 AEEVPGRNHTQCLQRWTKVLAPGLVKGHWRPEEDDLLKELVAEGR-KNWGQVATRIPGRTSKQCRERWYNHLDPSIIRGEYSPEEDRMILDAQARLGNRWSAIAAMLPGRTEDAVKIRW 226
BLAST of jgi.p|Trimin1|137248 vs. uniprot
Match: K3WIN4_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WIN4_GLOUD) HSP 1 Score: 146 bits (368), Expect = 4.350e-39 Identity = 64/119 (53.78%), Postives = 84/119 (70.59%), Query Frame = 1 Query: 10 APQVETRNHVQCLQRWKKVLRPGLAKGPWTAEEDETLMNLVRQGDISNWGDVAAVITTRTCKQCRERWQHHLNPDLRRGDYSPEEDAAILAGYERHGNRWATIIQDVPGRTAPSIRSRY 366 A +V RNH QCLQRW KVL+PGL KG W+ EED L +V QG +WG+VAA I RT KQCRERW++HL+P + +G ++PEED I GYE +GNRW I + +PGRT +++ R+ Sbjct: 74 ASRVPGRNHAQCLQRWNKVLKPGLVKGHWSYEEDSILERMVLQG-CHSWGEVAAHIPGRTAKQCRERWRNHLDPSINKGPFTPEEDVTIQQGYETYGNRWTQIAELLPGRTEDAVKLRW 191
BLAST of jgi.p|Trimin1|137248 vs. uniprot
Match: A0A024UVV8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UVV8_9STRA) HSP 1 Score: 145 bits (366), Expect = 4.570e-39 Identity = 61/119 (51.26%), Postives = 80/119 (67.23%), Query Frame = 1 Query: 10 APQVETRNHVQCLQRWKKVLRPGLAKGPWTAEEDETLMNLVRQGDISNWGDVAAVITTRTCKQCRERWQHHLNPDLRRGDYSPEEDAAILAGYERHGNRWATIIQDVPGRTAPSIRSRY 366 A +V RNH QCLQRW KVL+PGL KG W A+EDE L+ LV+ NWG+++ I RT KQCRERW++HL+P + +G YS +ED + A Y GNRW I +PGRT S++ R+ Sbjct: 67 AERVPGRNHAQCLQRWNKVLKPGLVKGHWAADEDENLVRLVQNSTTVNWGEISKSIEGRTAKQCRERWKNHLDPSINKGPYSSDEDMLLAAAYAELGNRWTQIANRLPGRTEDSVKMRW 185
BLAST of jgi.p|Trimin1|137248 vs. uniprot
Match: D0N660_PHYIT (Myb-like DNA-binding protein, putative n=9 Tax=Phytophthora TaxID=4783 RepID=D0N660_PHYIT) HSP 1 Score: 145 bits (366), Expect = 5.670e-39 Identity = 64/119 (53.78%), Postives = 85/119 (71.43%), Query Frame = 1 Query: 10 APQVETRNHVQCLQRWKKVLRPGLAKGPWTAEEDETLMNLVRQGDISNWGDVAAVITTRTCKQCRERWQHHLNPDLRRGDYSPEEDAAILAGYERHGNRWATIIQDVPGRTAPSIRSRY 366 A +V+ RNH QCLQRW KVL+PGL KG W+ EED TL +V QG +WG+VAA I RT KQCRERW++HL+P + + ++PEED I G+E+ GNRW I + +PGRT +I+ R+ Sbjct: 62 ASRVDGRNHAQCLQRWNKVLKPGLVKGHWSFEEDSTLEQMVLQG-CHSWGEVAAHIPGRTAKQCRERWRNHLDPSINKSPFTPEEDTIIQEGFEKMGNRWTQIAELLPGRTEDAIKLRW 179 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|137248 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_13761 ID=mRNA_13761|Name=jgi.p|Trimin1|137248|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=366bp|location=Sequence derived from alignment at Contig_43:666628..668093- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CTCGGTGACGCACCGCAGGTGGAGACGCGCAACCACGTCCAGTGCCTGCAback to top protein sequence of jgi.p|Trimin1|137248 >Trimin1|137248|gw1.43.37.1 ID=Trimin1|137248|gw1.43.37.1|Name=jgi.p|Trimin1|137248|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=122bp LGDAPQVETRNHVQCLQRWKKVLRPGLAKGPWTAEEDETLMNLVRQGDISback to top mRNA from alignment at Contig_43:666628..668093- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_13761 ID=mRNA_13761|Name=jgi.p|Trimin1|137248|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1466bp|location=Sequence derived from alignment at Contig_43:666628..668093- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_43:666628..668093- >mRNA_13761 ID=mRNA_13761|Name=jgi.p|Trimin1|137248|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=366bp|location=Sequence derived from alignment at Contig_43:666628..668093- (Tribonema minus UTEX_B_3156 )back to top |