mRNA_13730 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|166322
Unique NamemRNA_13730
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|166322 vs. uniprot
Match: A0A835YSA3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSA3_9STRA)

HSP 1 Score: 603 bits (1556), Expect = 1.240e-218
Identity = 288/288 (100.00%), Postives = 288/288 (100.00%), Query Frame = 1 
Query:    1 MARTLVHEVKQTIQRTEGFPPEQQRLIWSGKELKDSRSLRQHFMFPGPDNIHPPTLQLIPRLRGGGSLSGGMFADVADANGISRIAFSETAPEWRIACEGLNIEGLCSNAECAAHGQMVIHKIGMGAFALGGACACPLCVAPIVPLTCAFHRCVWMFEGVKADGGASLSTAWREAGDSYERFNTGTEGTSSGAMVEWERFMLIAKGRKFTCARAADTEDASSNGTQLDDCAVCLEPLRTRRAPFVKTPCGHLYHKACLTAWQRCSSAGSGRCPMCRADLCVLRIGEAD 864
            MARTLVHEVKQTIQRTEGFPPEQQRLIWSGKELKDSRSLRQHFMFPGPDNIHPPTLQLIPRLRGGGSLSGGMFADVADANGISRIAFSETAPEWRIACEGLNIEGLCSNAECAAHGQMVIHKIGMGAFALGGACACPLCVAPIVPLTCAFHRCVWMFEGVKADGGASLSTAWREAGDSYERFNTGTEGTSSGAMVEWERFMLIAKGRKFTCARAADTEDASSNGTQLDDCAVCLEPLRTRRAPFVKTPCGHLYHKACLTAWQRCSSAGSGRCPMCRADLCVLRIGEAD
Sbjct:    1 MARTLVHEVKQTIQRTEGFPPEQQRLIWSGKELKDSRSLRQHFMFPGPDNIHPPTLQLIPRLRGGGSLSGGMFADVADANGISRIAFSETAPEWRIACEGLNIEGLCSNAECAAHGQMVIHKIGMGAFALGGACACPLCVAPIVPLTCAFHRCVWMFEGVKADGGASLSTAWREAGDSYERFNTGTEGTSSGAMVEWERFMLIAKGRKFTCARAADTEDASSNGTQLDDCAVCLEPLRTRRAPFVKTPCGHLYHKACLTAWQRCSSAGSGRCPMCRADLCVLRIGEAD 288
[Close]
BLAST of jgi.p|Trimin1|166322 vs. uniprot
Match: A0A836CBY2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBY2_9STRA)

HSP 1 Score: 449 bits (1154), Expect = 3.130e-157
Identity = 225/295 (76.27%), Postives = 245/295 (83.05%), Query Frame = 1 
Query:    4 ARTLVHEVKQTIQRTEGFPPEQQRLIWSGKELKDSRSLRQHFMFPGPDNIHPPTLQLIPRLRGGGSLSGGMFADVADANGISRIAFSETAPEWRIACEGLNIEGLCSNAECAAHGQMVIHKIGMGAFALGGACACPLCVAPIVPLTCAFHRCVWMFEGVKADGGASLSTAWREAGDSYERFNTGTEGTSSGAMVEWERFMLIAKGRKFTCARAADT--------EDASSNGTQLDDCAVCLEPLRTRRAPFVKTPCGHLYHKACLTAWQRCSSAGSGRCPMCRADLCVLRIGEAD 864
            ARTLV E+KQ I   EG PPEQQRLIW GK+L+D RSL ++ + P  +++  P L L+ R+RGGG      FADVADANGISRIAFS+T P+WRIACEGLNIEGLC+NAECAAHG+MVIHKIGMGAF LGGACACPLC APIVPLTCAFHRCVWMFEGVKAD  A+LSTAWREAGD+YERFNTGTEG+ SGAMVEWER +LIAKGR    A AA T        E  SS+GTQLDDCAVCLEPLRT  A FVKTPCGHLYHKACLTAWQRCSSAGSGRCPMCRADLCVLRIGEAD
Sbjct:    9 ARTLVCELKQIITDLEGIPPEQQRLIWCGKQLEDRRSLSEYHIDPDINDL--PALHLVLRMRGGGPT----FADVADANGISRIAFSDTGPKWRIACEGLNIEGLCTNAECAAHGKMVIHKIGMGAFTLGGACACPLCDAPIVPLTCAFHRCVWMFEGVKADSCAALSTAWREAGDTYERFNTGTEGSGSGAMVEWERLVLIAKGRDSIHAAAAYTAVVCSKSGELTSSSGTQLDDCAVCLEPLRTLFASFVKTPCGHLYHKACLTAWQRCSSAGSGRCPMCRADLCVLRIGEAD 297
[Close]
BLAST of jgi.p|Trimin1|166322 vs. uniprot
Match: A0A835ZBV8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBV8_9STRA)

HSP 1 Score: 328 bits (841), Expect = 6.400e-110
Identity = 162/278 (58.27%), Postives = 195/278 (70.14%), Query Frame = 1 
Query:   37 IQRTEGFPPEQQRLIWSGKELKDSRSLRQHFMFPGPDNIHPPTLQLIPRLRGGGSLSGGMFADVADANGISRIAFSETAPEWRIACEGLNIEGLCSNAECAAHGQMVIHKIGMGAFALGGACACPLCVAPIVPLTCAFHRCVWMFEGVKADGGASLSTAWREAGDSYERFNTGTEGTSSGAMVEWERFMLIAKGRKFTCARAADTEDASS-----------NGTQLDDCAVCLEPLRTRRAPFVKTPCGHLYHKACLTAWQRCSSAGSGRCPMCRADL 837
            IQ  EG P +QQRL W G  L+  R++  + M   P+ +  PTLQL+  LRGGG ++GG FADVADA+ ISR+AF + AP+WR+AC GLN EG+CS   C A G+MVIH++GMGAF LG ACACPLC  P  P+TCAFH CVWMFEGVKA GGA+L + WREAGD+YERFNTG EG S G+MVEWER +L+AK R       A T  A S           +G Q+DDCAVCLEPL +R     +TPCGH+YH+ACL AW+R SSA S  CP CRADL
Sbjct:    2 IQDAEGIPLDQQRLCWHGTALEGCRTVSDYNMKFCPE-LCEPTLQLVLMLRGGGCVTGGRFADVADASSISRMAFDDDAPKWRVACPGLNAEGVCSTTWCRARGEMVIHEVGMGAFTLGDACACPLCRRPFTPVTCAFHDCVWMFEGVKAGGGAALGSVWREAGDAYERFNTGAEGESGGSMVEWERLVLVAKYRGHVRVPDAGTAAARSVAGEPAAPAGGSGAQVDDCAVCLEPLHSRIWEPAETPCGHVYHEACLKAWRRSSSAASATCPTCRADL 278
[Close]
BLAST of jgi.p|Trimin1|166322 vs. uniprot
Match: A0A835Z319_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z319_9STRA)

HSP 1 Score: 327 bits (839), Expect = 6.810e-107
Identity = 164/293 (55.97%), Postives = 197/293 (67.24%), Query Frame = 1 
Query:    1 MARTLVHEVKQTIQRTEGFPPEQQRLIWSGKELKDSRSLRQHFMFPGPDNIHPPTLQLIPRLRGGGSLSGGMFADVADANGISRIAFSETAPEWRIACEGLNIEGLCSNAECAAHGQMVIHKIGMGAFALGGACACPLCVAPIVPLTCAFHRCVWMFEGVKADGGASLSTAWREAGDSYERFNTGTEGTSSGAMVEWERFMLIAKGRKFTCARAADTEDA------------SSNGTQLDDCAVCLEPLRTRRAPF--VKTPCGHLYHKACLTAWQRCSSAGSGRCPMCRADL 837
            +A T V ++KQ  Q  +  PP+QQRL W GK L+DSR++  + M   P  +  PTLQL  RLRGGG ++GG FADVAD N IS +AFS  AP WR+AC GLN+EG+C    C A G+MVI  +GMGAF LG ACACPLC  P  P+TCAFH C WMFEGVKA GGA+L   WREAGD+YERFNTG +G S G+MVEWER +L+AK R      AAD   A            S +G Q+DDCAVCLEPL +         TPCGH+YH+ACL AW+R SSA +G CP CRA+L
Sbjct:  181 VADTTVDKLKQMFQDAQSIPPDQQRLRWRGKMLEDSRTVSDYGMKFCPQ-LREPTLQLELRLRGGGCVTGGRFADVADLNAISHMAFSHNAPAWRVACPGLNVEGVCGTTGCRARGKMVIRGVGMGAFTLGDACACPLCRRPFAPVTCAFHACAWMFEGVKAGGGAALGGVWREAGDAYERFNTGADGESGGSMVEWERLVLVAKYRGRKRIPAADAAAAGGVAGEPAAALASGSGAQVDDCAVCLEPLHSWHVSLQAAVTPCGHVYHEACLKAWRRSSSASNGTCPSCRANL 472
[Close]
BLAST of jgi.p|Trimin1|166322 vs. uniprot
Match: A0A835YTW7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTW7_9STRA)

HSP 1 Score: 325 bits (833), Expect = 5.470e-106
Identity = 161/281 (57.30%), Postives = 196/281 (69.75%), Query Frame = 1 
Query:    1 MARTLVHEVKQTIQRTEGFPPEQQRLIWSGKELKDSRSLRQHFMFPGPDNIHPPTLQLIPRLRGGGSLSGGMFADVADANGISRIAFSETAPEWRIACEGLNIEGLCSNAECAAHGQMVIHKIGMGAFALGGACACPLCVAPIVPLTCAFHRCVWMFEGVKADGGASLSTAWREAGDSYERFNTGTEGTSSGAMVEWERFMLIAKGRKFTCARAADTEDASSNGTQLDDCAVCLEPLRTRRAPF--VKTPCGHLYHKACLTAWQRCSSAGSGRCPMCRADL 837
            +A T V ++KQ I  TEG PP+QQRLIW GK L+DSR++  + M   P+ +  P++Q++ RLRGGGS++ G FADVADAN ISR+AFS  AP WR+AC GLN+EG+C    C A G+MVIH +GMGAF LG ACACPLC  P  P+TCAF  C WMFEGVKA GG +L   WR AGD+YERFNTG +G S G+MVEWER +L+AK R      AA    AS +  Q+DDCAVCLEPL +         TPCGH+YH+ACL AW+R SS   G C  C ADL
Sbjct:  156 VADTTVDKLKQMIHDTEGIPPDQQRLIWRGKALEDSRTVSDYGMKFCPE-LREPSVQILLRLRGGGSVTSGRFADVADANAISRMAFSHNAPAWRVACPGLNVEGVCGTTGCRARGEMVIHGVGMGAFTLGDACACPLCRRPFAPVTCAFLACAWMFEGVKAGGGVALGGVWRAAGDAYERFNTGADGESGGSMVEWERLVLVAKCRGRVRPAAAL---ASGSSAQVDDCAVCLEPLCSWNVSLQAAVTPCGHVYHEACLKAWRRSSSTSRGTCASCCADL 432
[Close]
BLAST of jgi.p|Trimin1|166322 vs. uniprot
Match: A0A835ZEG5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEG5_9STRA)

HSP 1 Score: 206 bits (525), Expect = 3.880e-60
Identity = 118/279 (42.29%), Postives = 152/279 (54.48%), Query Frame = 1 
Query:   25 VKQTIQRTEGFPPEQQRLIWSGKELKDSRSLRQHFMFPGPDNIHPPTLQLIPRLRGGG-SLSGGMFADVADANGISRIAFSETAPEWRIACEGLNIEGLCSNAECAAHGQMVIHKIGMGAFALGGACACPLCVAPIVPLTCAFHRCVWMFEGVKADGGASLSTAWREAGDS-YERFNTGTEGTSSGAMVEWERFMLIAKG----RKFTCARAADTED--ASSNGTQLDDCAVCLEPLRTRRAPFVKTPCGHLYHKACLTAWQRCSSAGSGRCPMCRADL 837
            +K  I   EG P +QQRLI++GK+L+DSR++  + M          TL L+ RLRGGG   S   FADV++   I R +FS+ AP WR    GLN+EG C +A C A G +VI  IGM AF LG  C CP+C + I P+TC F+ C W ++G K DG   +  AWR AGD  YERF        S  M  W R +L+AK     +    A  AD  D   ++  ++ D+CAV L     R      T CGH YH  CL  W+ CS A   +CP CRA L
Sbjct:  180 LKDRISDCEGIPADQQRLIFAGKQLEDSRTVDDYSM------ERDSTLHLVLRLRGGGCGPSSLQFADVSNDGAIERRSFSQDAPRWRTVRRGLNMEGYCRDARCKARGALVIAPIGMAAFPLGSRCTCPMCGSAITPVTCGFNACAWTYDGAKEDG-ELVRGAWRTAGDDKYERFR------ESDNMATWSRLVLVAKPAVKVKSDPGAAVADAVDNKEAAGASEPDECAVGLRGFGGRSGAVTTTRCGHRYHALCLAGWRECSHASCSKCPTCRAAL 445
[Close]
BLAST of jgi.p|Trimin1|166322 vs. uniprot
Match: A0A835ZBQ4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBQ4_9STRA)

HSP 1 Score: 197 bits (502), Expect = 3.370e-57
Identity = 112/285 (39.30%), Postives = 157/285 (55.09%), Query Frame = 1 
Query:   16 VHEVKQTIQRTEGFPPEQQRLIWSGKELKDSRSLRQHFMFPGPDNIHPPTLQLIPRLRGGG-SLSGGMFADVADANGISRIAFSETAPEWRIACEGLNIEGLCSNAECAAHGQMVIHKIGMGAFALGGACACPLCVAPIVPLTCAFHRCVWMFEGVKADGGASLSTAWREAGDS-YERFNTGTEGTSSGAMVEWERFMLIAKGR-------KFTCARAADTEDASSNGTQLDDCAVCLEPLRTR--RAPFVKTPCGHLYHKACLTAWQRCSSAGSGRCPMCRADL 837
            +  +K+ IQ  EG  P+QQR+I++G++L+D RS+  + +       H  TL L+ RLRGGG   SG  FADV +   + R + S+ AP WR    G+N+EG C N  C A   +VI  +GM AF LG  C CP+C + I P+TC F+ C W ++G K +GG  +  AWR AGD  Y+RF        S  M  W R +L+AK         + T A ++  + A+    Q D+CAVCL    +    +    TPCG+ YH  CL +W+ CS A   +CP CRA L
Sbjct:  130 IDALKEMIQDLEGILPDQQRIIFAGRQLEDGRSVADYSI----QKEH--TLHLVLRLRGGGCGPSGLQFADVTNDGAMERRSVSDDAPVWRTVRRGINMEGYCRNLRCEARVTLVIAPVGMAAFPLGSLCPCPVCYSAITPVTCGFYACAWTYDGAK-EGGELVRGAWRTAGDDKYDRFR------ESDNMTTWSRLVLVAKPAVKVKPKPRATAAESSGADKAAGR-LQPDECAVCLRGFGSGDGSSKATSTPCGYRYHALCLASWRECSHASCSKCPTCRAVL 400
[Close]
BLAST of jgi.p|Trimin1|166322 vs. uniprot
Match: A0A836C8N2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8N2_9STRA)

HSP 1 Score: 178 bits (452), Expect = 1.130e-50
Identity = 107/277 (38.63%), Postives = 147/277 (53.07%), Query Frame = 1 
Query:   16 VHEVKQTIQRTEGFPPEQQRLIWSGKELKDSRSLRQHFMFPGPDNIHPPTLQLIPRLRGGGS--LSGGMFADVADANGISRIAFSETAPEWRIACEGLNIEGLCSNAECAAHGQMVIHKIGMGAFALGGACACPLCVAPIVPLTCAFHRCVWMFEGVKADGGASLSTAWREAGDS-YERFNTGTEGTSSGAMVEWERFMLIAKGRKFTCARAADTEDASSNGTQLDDCAVCLEPLRTRRAPFVKTPCGHLYHKACLTAWQRCSSAGSGRCPMCRADL 837
            V  +++ I+  EG P +QQ+L ++GK L+ S +L    +  G       T+ ++  L GG S  L    FADV+ ++ + R++F   AP+WR ACEGLN+EG C N  C A  ++VI  IGM AF LG  CACP C A + P+TC F+ C WM+EG K DG   + + W  A D  Y R N        G M  W R +L+AK        A+D +D   +     +CAVCL PL        +  CGH Y+  CL  WQ  SS G+  C  CR +L
Sbjct:   58 VASLEEAIEGKEGVPVDQQKLSFAGKRLQPSHTLGDFGIGSGS------TVHMVLSLCGGRSMPLLKIPFADVSRSDAMQRLSFDPDAPDWRTACEGLNMEGYCRNRACKARNKLVISMIGMNAFTLGSQCACPECGADVTPVTCGFYACTWMYEGAKTDG-MLMRSPWHTASDDLYHRVN------EHGNMASWSRLVLVAK------PIASDAQDKDKDALP-SECAVCLMPLAAAEHTVTRA-CGHRYYATCLQRWQE-SSIGA-TCTACRTEL 311
[Close]
BLAST of jgi.p|Trimin1|166322 vs. uniprot
Match: A0A6A3IE52_9STRA (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3IE52_9STRA)

HSP 1 Score: 176 bits (446), Expect = 5.230e-49
Identity = 106/281 (37.72%), Postives = 151/281 (53.74%), Query Frame = 1 
Query:    4 ARTLVHEVKQTIQRTEGFPPEQQRLIWSGKELKDSRSLRQHFMFPGPDNIHPPTLQLIPRLRGGGSLSGGMFADVADANGISRIAFSETAPEWRIACEGLNIEGLCSNAECAAHGQMVIHKIGMGAFAL--GGACACPLCVAPIVPLTCAFHRCVWMFEGVKADGGASLSTAWR-EAGDSYERFNTGTEGTSSGAMVEWERFMLIAKGRKFTCARAADTEDASSNGTQLDD--CAVCLEPLRTRRAPFVKTPCGHLYHKACLTAWQRCSSAGSG--RCPMC 825
            A   + E+K  IQ  EG PP+QQR+I++GK+L+D R L  + +  G       TL L+ RLRGG  +    FADV+D +      FS TAPEWRI  +GLNIEG C N  C A+ ++VIH  G   F L   G   CP C + + P+TC F+ C W FEGVKA GG   S+ W+  +G+ Y+RF+       +   +EWE  +++ K  K   A AA+  +++       D  CAVC   + +       + CGHL+H  C+  W + S       +CP+C
Sbjct:  120 AANTIEEIKYDIQEQEGIPPDQQRIIFAGKQLEDGRKLSDYNIQYGS------TLHLVLRLRGG-YVEPRCFADVSDGSISVEHEFSRTAPEWRICRKGLNIEGRCMNRTCIAYHELVIHPAGFEMFNLRKDGDVTCPKCRSKVKPVTCGFYDCAWKFEGVKARGGFFTSSPWQIVSGEKYQRFDA----DETSGSIEWESLLILVKPLKE--AVAAELVESAQEARLHSDLVCAVCWTEILSGSG--AGSECGHLFHCGCIENWSKWSEGQKTLTKCPVC 385
[Close]
BLAST of jgi.p|Trimin1|166322 vs. uniprot
Match: A0A835YV99_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV99_9STRA)

HSP 1 Score: 165 bits (417), Expect = 4.930e-48
Identity = 75/116 (64.66%), Postives = 88/116 (75.86%), Query Frame = 1 
Query:  262 SETAPEWRIACEGLNIEGLCSNAECAAHGQMVIHKIGMGAFALGGACACPLCVAPIVPLTCAFHRCVWMFEGVKADGGASLSTAWREAGDSYERFNTGTEGTSSGA-MVEWERFML 606
            S+TAP WR    G+N+E LC NA+CAA+G++VIH +GMGAFALG ACACPLC  P  P+ CA + CVWMFEGVKA GGA LS AWRE GD+YERFNT  EG S G  M +WER +L
Sbjct:    1 SDTAPAWRGVARGINVECLCGNAQCAAYGEVVIHSVGMGAFALGDACACPLCHVPSAPVACAVYNCVWMFEGVKAGGGAVLSGAWRETGDAYERFNTRAEGESGGGGMADWERLVL 116
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|166322 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YSA3_9STRA1.240e-218100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CBY2_9STRA3.130e-15776.27Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZBV8_9STRA6.400e-11058.27Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z319_9STRA6.810e-10755.97Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YTW7_9STRA5.470e-10657.30Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZEG5_9STRA3.880e-6042.29Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZBQ4_9STRA3.370e-5739.30Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836C8N2_9STRA1.130e-5038.63Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6A3IE52_9STRA5.230e-4937.72Uncharacterized protein n=5 Tax=Phytophthora TaxID... [more]
A0A835YV99_9STRA4.930e-4864.66Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_43contigContig_43:205546..206460 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|166322|e_gw1.43.77.1
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011,ko03029,ko04121,ko04131,ko04147
KEGG ModuleM00177,M00179
KEGG Pathwayko03010,ko03320,ko04139,ko04214,ko04217,ko04621,ko04668,map03010,map03320,map04139,map04214,map04217,map04621,map04668
KEGG koko:K02927,ko:K02977,ko:K08770,ko:K17065
EC3.6.5.5
DescriptionUbiquitin homologues
COG categoryJ
Max annot lvl2759|Eukaryota
EggNOG OGsCOG1552@1|root,KOG0003@2759|Eukaryota,3QJ68@4776|Peronosporales
Evalue4.39e-51
Seed ortholog67593.Physo140234
Hectar predicted targeting categoryother localisation
TranscriptId166644
TrackFilteredModels1
ProteinId166322
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|166322gene_13730Tribonema minus UTEX_B_3156 geneContig_43 205546..206460 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13730_1exon_13730_1Tribonema minus UTEX_B_3156 exonContig_43 205546..206213 +
exon_13730_2exon_13730_2Tribonema minus UTEX_B_3156 exonContig_43 206262..206460 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13730CDS_13730Tribonema minus UTEX_B_3156 CDSContig_43 205546..206213 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|166322Trimin1|166322|e_gw1.43.77.1Tribonema minus UTEX_B_3156 polypeptideContig_43 205546..206460 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13730 ID=mRNA_13730|Name=jgi.p|Trimin1|166322|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=867bp|location=Sequence derived from alignment at Contig_43:205546..206460+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCACGCACTCTCGTGCACGAGGTCAAGCAGACGATTCAGCGGACAGA
AGGCTTCCCTCCAGAGCAGCAGCGCCTGATCTGGTCCGGGAAGGAGCTCA
AGGACAGCCGCAGCCTGCGCCAGCATTTCATGTTTCCCGGCCCCGACAAC
ATACACCCGCCCACGCTGCAGCTCATACCGCGGCTGCGCGGCGGCGGCAG
CCTCTCTGGTGGCATGTTTGCTGATGTGGCCGACGCAAACGGCATATCGC
GCATTGCATTCAGCGAGACCGCGCCCGAGTGGCGCATAGCCTGCGAGGGG
CTGAACATCGAGGGACTGTGCAGCAACGCGGAGTGCGCAGCGCACGGGCA
GATGGTCATCCACAAGATCGGCATGGGCGCCTTCGCGCTCGGCGGTGCGT
GCGCATGCCCGCTGTGCGTTGCGCCGATCGTGCCGCTCACGTGCGCCTTC
CACCGCTGCGTGTGGATGTTCGAGGGCGTTAAGGCGGACGGTGGCGCATC
GCTCAGCACCGCGTGGCGCGAGGCGGGCGACTCCTACGAGCGCTTCAACA
CCGGCACGGAGGGCACCAGCAGCGGCGCCATGGTGGAGTGGGAGCGGTTT
ATGTTGATCGCCAAGGGCCGAAAGTTCACTTGTGCTCGTGCCGCCGACAC
AGAGGATGCCAGCAGCAACGGCACTCAGCTCGATGACTGTGCCGTTTGCC
TGGAGCCGCTGCGCACGCGCCGCGCACCATTCGTCAAGACGCCCTGCGGG
CACCTGTACCACAAGGCGTGCCTGACTGCGTGGCAGCGCTGCAGCAGCGC
TGGCAGCGGCAGGTGCCCCATGTGCCGCGCCGACCTGTGCGTCCTGCGTA
TCGGTGAGGCGGACTGA
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protein sequence of jgi.p|Trimin1|166322

>Trimin1|166322|e_gw1.43.77.1 ID=Trimin1|166322|e_gw1.43.77.1|Name=jgi.p|Trimin1|166322|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=289bp
MARTLVHEVKQTIQRTEGFPPEQQRLIWSGKELKDSRSLRQHFMFPGPDN
IHPPTLQLIPRLRGGGSLSGGMFADVADANGISRIAFSETAPEWRIACEG
LNIEGLCSNAECAAHGQMVIHKIGMGAFALGGACACPLCVAPIVPLTCAF
HRCVWMFEGVKADGGASLSTAWREAGDSYERFNTGTEGTSSGAMVEWERF
MLIAKGRKFTCARAADTEDASSNGTQLDDCAVCLEPLRTRRAPFVKTPCG
HLYHKACLTAWQRCSSAGSGRCPMCRADLCVLRIGEAD*
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mRNA from alignment at Contig_43:205546..206460+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13730 ID=mRNA_13730|Name=jgi.p|Trimin1|166322|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=915bp|location=Sequence derived from alignment at Contig_43:205546..206460+ (Tribonema minus UTEX_B_3156 )
ATGGCACGCACTCTCGTGCACGAGGTCAAGCAGACGATTCAGCGGACAGA
AGGCTTCCCTCCAGAGCAGCAGCGCCTGATCTGGTCCGGGAAGGAGCTCA
AGGACAGCCGCAGCCTGCGCCAGCATTTCATGTTTCCCGGCCCCGACAAC
ATACACCCGCCCACGCTGCAGCTCATACCGCGGCTGCGCGGCGGCGGCAG
CCTCTCTGGTGGCATGTTTGCTGATGTGGCCGACGCAAACGGCATATCGC
GCATTGCATTCAGCGAGACCGCGCCCGAGTGGCGCATAGCCTGCGAGGGG
CTGAACATCGAGGGACTGTGCAGCAACGCGGAGTGCGCAGCGCACGGGCA
GATGGTCATCCACAAGATCGGCATGGGCGCCTTCGCGCTCGGCGGTGCGT
GCGCATGCCCGCTGTGCGTTGCGCCGATCGTGCCGCTCACGTGCGCCTTC
CACCGCTGCGTGTGGATGTTCGAGGGCGTTAAGGCGGACGGTGGCGCATC
GCTCAGCACCGCGTGGCGCGAGGCGGGCGACTCCTACGAGCGCTTCAACA
CCGGCACGGAGGGCACCAGCAGCGGCGCCATGGTGGAGTGGGAGCGGTTT
ATGTTGATCGCCAAGGGCCGAAAGTTCACTTGTGCTCGTGCCGCCGACAC
AGAGGATGCCAGCAGCAAGTCAGGTGAGCGTGCCGGTGCTACTGCTGCTG
CGCCGGCCAGCAGCAGCGGCACTCAGCTCGATGACTGTGCCGTTTGCCTG
GAGCCGCTGCGCACGCGCCGCGCACCATTCGTCAAGACGCCCTGCGGGCA
CCTGTACCACAAGGCGTGCCTGACTGCGTGGCAGCGCTGCAGCAGCGCTG
GCAGCGGCAGGTGCCCCATGTGCCGCGCCGACCTGTGCGTCCTGCGTATC
GGTGAGGCGGACTGA
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Coding sequence (CDS) from alignment at Contig_43:205546..206460+

>mRNA_13730 ID=mRNA_13730|Name=jgi.p|Trimin1|166322|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=867bp|location=Sequence derived from alignment at Contig_43:205546..206460+ (Tribonema minus UTEX_B_3156 )
ATGGCACGCACTCTCGTGCACGAGGTCAAGCAGACGATTCAGCGGACAGA
AGGCTTCCCTCCAGAGCAGCAGCGCCTGATCTGGTCCGGGAAGGAGCTCA
AGGACAGCCGCAGCCTGCGCCAGCATTTCATGTTTCCCGGCCCCGACAAC
ATACACCCGCCCACGCTGCAGCTCATACCGCGGCTGCGCGGCGGCGGCAG
CCTCTCTGGTGGCATGTTTGCTGATGTGGCCGACGCAAACGGCATATCGC
GCATTGCATTCAGCGAGACCGCGCCCGAGTGGCGCATAGCCTGCGAGGGG
CTGAACATCGAGGGACTGTGCAGCAACGCGGAGTGCGCAGCGCACGGGCA
GATGGTCATCCACAAGATCGGCATGGGCGCCTTCGCGCTCGGCGGTGCGT
GCGCATGCCCGCTGTGCGTTGCGCCGATCGTGCCGCTCACGTGCGCCTTC
CACCGCTGCGTGTGGATGTTCGAGGGCGTTAAGGCGGACGGTGGCGCATC
GCTCAGCACCGCGTGGCGCGAGGCGGGCGACTCCTACGAGCGCTTCAACA
CCGGCACGGAGGGCACCAGCAGCGGCGCCATGGTGGAGTGGGAGCGGTTT
ATGTTGATCGCCAAGGGCCGAAAGTTCACTTGTGCTCGTGCCGCCGACAC
AGAGGATGCCAGCAGCAACGGCACTCAGCTCGATGACTGTGCCGTTTGCC
TGGAGCCGCTGCGCACGCGCCGCGCACCATTCGTCAAGACGCCCTGCGGG
CACCTGTACCACAAGGCGTGCCTGACTGCGTGGCAGCGCTGCAGCAGCGC
TGGCAGCGGCAGGTGCCCCATGTGCCGCGCCGACCTGTGCGTCCTGCGTA
TCGGTGAGGCGGACTGA
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