mRNA_13688 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|351292
Unique Name	mRNA_13688
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|351292 vs. uniprot
Match: A0A836C8P2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8P2_9STRA)

HSP 1 Score: 872 bits (2253), Expect = 5.080e-316
Identity = 477/477 (100.00%), Postives = 477/477 (100.00%), Query Frame = 1

Query:    1 MGRRLQGLAWKDLLLLLTCWAWADAAACGVGSVACGTCDEAGCTSNANSATWAVSCCPHIILRSGRRCDLWSKGPCIGDAEAQLQGVQSTPAGAPLAAPEQGLGQRELDGVQEGHGSGGGGGEREWGQEASXXXXXXXXXXRALNRLDVPAALWMITSNAAQVWSGNFDGTTASFTCNYDACSISDLAPFGFDANTLSSARAGKCYALEIYDTAQQASPPLFSLRAGHEVSFARKQGAPFDDKAGSLRMVRRSGVAGCASPAGDQGVGFETEGGGGSAPKWQCGDYNLMCQYSCDCGGGCTCVAPTPAVRAWVDGINAQRAARGYAPVQWSAADTMTVYAAMLDGSIGCSGAASSKAKVGGSGGGXXXXXXXXXXXXXXXXXXXXXXXGKRPHVLRQLRLDTQRQQQRRRLEVIADEGGYTLETIPDTSAAVDDPSVVDVSVAHTRCTRAVQDLGSDACKQVAVTRRPDPASPTDSS 1431
            MGRRLQGLAWKDLLLLLTCWAWADAAACGVGSVACGTCDEAGCTSNANSATWAVSCCPHIILRSGRRCDLWSKGPCIGDAEAQLQGVQSTPAGAPLAAPEQGLGQRELDGVQEGHGSGGGGGEREWGQEASXXXXXXXXXXRALNRLDVPAALWMITSNAAQVWSGNFDGTTASFTCNYDACSISDLAPFGFDANTLSSARAGKCYALEIYDTAQQASPPLFSLRAGHEVSFARKQGAPFDDKAGSLRMVRRSGVAGCASPAGDQGVGFETEGGGGSAPKWQCGDYNLMCQYSCDCGGGCTCVAPTPAVRAWVDGINAQRAARGYAPVQWSAADTMTVYAAMLDGSIGCSGAASSKAKVGGSGGGXXXXXXXXXXXXXXXXXXXXXXXGKRPHVLRQLRLDTQRQQQRRRLEVIADEGGYTLETIPDTSAAVDDPSVVDVSVAHTRCTRAVQDLGSDACKQVAVTRRPDPASPTDSS
Sbjct:    1 MGRRLQGLAWKDLLLLLTCWAWADAAACGVGSVACGTCDEAGCTSNANSATWAVSCCPHIILRSGRRCDLWSKGPCIGDAEAQLQGVQSTPAGAPLAAPEQGLGQRELDGVQEGHGSGGGGGEREWGQEASXXXXXXXXXXRALNRLDVPAALWMITSNAAQVWSGNFDGTTASFTCNYDACSISDLAPFGFDANTLSSARAGKCYALEIYDTAQQASPPLFSLRAGHEVSFARKQGAPFDDKAGSLRMVRRSGVAGCASPAGDQGVGFETEGGGGSAPKWQCGDYNLMCQYSCDCGGGCTCVAPTPAVRAWVDGINAQRAARGYAPVQWSAADTMTVYAAMLDGSIGCSGAASSKAKVGGSGGGXXXXXXXXXXXXXXXXXXXXXXXGKRPHVLRQLRLDTQRQQQRRRLEVIADEGGYTLETIPDTSAAVDDPSVVDVSVAHTRCTRAVQDLGSDACKQVAVTRRPDPASPTDSS 477

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|351292 vs. uniprot

BLAST of jgi.p|Trimin1|351292 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A836C8P2_9STRA	5.080e-316	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_86	contig	Contig_86:304415..307075 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|351292\|estExt_Genemark1.C_Ctg_860032
Hectar predicted targeting category	signal peptide
TranscriptId	351614
Track	FilteredModels1
ProteinId	351292

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|351292	gene_13688	Tribonema minus UTEX_B_3156	gene	Contig_86 304415..307075 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_13688_1	exon_13688_1	Tribonema minus UTEX_B_3156	exon	Contig_86 304415..304515 +
exon_13688_2	exon_13688_2	Tribonema minus UTEX_B_3156	exon	Contig_86 305164..305548 +
exon_13688_3	exon_13688_3	Tribonema minus UTEX_B_3156	exon	Contig_86 305752..307075 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_13688	CDS_13688	Tribonema minus UTEX_B_3156	CDS	Contig_86 304415..304515 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_13688	UTR3_13688	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_86 306766..307075 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|351292	Trimin1\|351292\|estExt_Genemark1.C_Ctg_860032	Tribonema minus UTEX_B_3156	polypeptide	Contig_86 304415..306765 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_86:304415..307075+
coding sequence from alignment at Contig_86:304415..307075+

spliced messenger RNA

>mRNA_13688 ID=mRNA_13688|Name=jgi.p|Trimin1|351292|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1810bp|location=Sequence derived from alignment at Contig_86:304415..307075+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAAGGAGGCTCCAGGGGCTAGCGTGGAAGGACCTGCTGCTGCTGCT
GACGTGCTGGGCGTGGGCTGACGCTGCCGCGTGCGGCGTTGGCAGCGTTG
CGTGCGGGACGTGCGACGAGGCGGGCTGCACGAGCAACGCCAACAGCGCC
ACGTGGGCCGTGTCATGCTGCCCCCACATCATCTTGAGGAGCGGCAGGCG
CTGCGACCTGTGGTCCAAGGGCCCATGCATCGGCGACGCAGAAGCACAGT
TGCAAGGGGTGCAAAGCACGCCTGCTGGAGCGCCACTGGCGGCACCGGAG
CAGGGGCTGGGGCAACGTGAACTTGATGGGGTGCAGGAGGGGCATGGCAG
TGGCGGCGGCGGGGGCGAGCGGGAATGGGGGCAGGAGGCGAGCGGGGGCG
AGAGGGAATGGGGGCAGGAGGCGAGGGCGCTGAACCGGCTGGACGTGCCG
GCAGCACTGTGGATGATCACCAGCAACGCCGCACAGGTGTGGTCGGGGAA
CTTTGACGGCACGACGGCGTCCTTCACGTGCAACTACGACGCCTGCTCCA
TCTCAGACCTCGCGCCGTTCGGCTTCGACGCGAACACGCTCTCCAGCGCG
CGCGCCGGCAAGTGCTACGCGCTCGAAATCTACGACACGGCGCAGCAGGC
GTCGCCGCCGCTGTTCTCGCTGCGCGCGGGCCACGAGGTGTCGTTCGCAA
GAAAGCAGGGCGCGCCGTTCGACGACAAAGCGGGCAGTCTGCGTATGGTG
CGGCGCAGCGGCGTCGCGGGCTGCGCGTCGCCCGCAGGCGACCAGGGCGT
GGGGTTCGAGACCGAGGGCGGCGGCGGCAGCGCTCCGAAGTGGCAGTGCG
GCGACTACAACCTCATGTGCCAGTACTCCTGCGACTGCGGCGGCGGCTGC
ACGTGCGTCGCGCCGACGCCGGCCGTGCGCGCGTGGGTCGACGGCATCAA
CGCGCAGCGCGCGGCGCGCGGCTACGCGCCCGTCCAGTGGAGCGCCGCCG
ACACCATGACGGTGTACGCGGCGATGCTGGACGGCAGCATCGGATGCTCT
GGCGCGGCGTCCTCAAAGGCCAAGGTCGGCGGCAGCGGCGGCGGCGGCGG
CAGCGGCGGCGGCGGCAAGTCGGGGGGGAAGGCGCACGGCAAAGGCAAAG
CGCAGGGCAAAGGCGGCAAGCGCCCGCACGTCCTCCGGCAGCTTAGACTA
GATACGCAGCGTCAGCAGCAGCGGCGGCGGCTGGAGGTGATCGCGGACGA
GGGCGGCTACACGCTGGAGACGATCCCCGACACGAGCGCCGCCGTCGACG
ACCCGAGCGTCGTGGACGTGTCCGTTGCGCACACGCGCTGCACGCGCGCC
GTCCAAGACCTCGGCTCCGACGCGTGCAAGCAGGTCGCCGTGACACGCCG
CCCCGACCCCGCTTCGCCGACGGACAGCAGCAGCAACGGCGGTGGCGGCA
GCGGCGGCGGCGGCGGCGGCGGTGCCGGTGCCGGTGCCGGTCCCGCATGA
GGTGCACGTGTACAGGAGGACGCCAACTCGTCGTACGGAAGCGTGAAACA
GTGCTACTACTACTAGTTCATGTTATTCAGACGGCGGCTCCTGCTTGAGC
ATCGTTCGTTCTGCTGGCTCTGCCATAGTGCTACGGCGCTTACCGACTGC
TGCGGCGCCCAACATGACGCTGCAGCGCAAGCGCGCTGGCGGGCGTGCAA
TCATATAACCCGTCGTATGCTCTCACTCACCTTATGCTGCCTCCTTCAGC
ACCAAATTATTACAGAATACAACCACACAATCACTGCACCTTTTTGTGCT
GGTGTTGCAA

protein sequence of jgi.p|Trimin1|351292

>Trimin1|351292|estExt_Genemark1.C_Ctg_860032 ID=Trimin1|351292|estExt_Genemark1.C_Ctg_860032|Name=jgi.p|Trimin1|351292|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=500bp
MGRRLQGLAWKDLLLLLTCWAWADAAACGVGSVACGTCDEAGCTSNANSA
TWAVSCCPHIILRSGRRCDLWSKGPCIGDAEAQLQGVQSTPAGAPLAAPE
QGLGQRELDGVQEGHGSGGGGGEREWGQEASGGEREWGQEARALNRLDVP
AALWMITSNAAQVWSGNFDGTTASFTCNYDACSISDLAPFGFDANTLSSA
RAGKCYALEIYDTAQQASPPLFSLRAGHEVSFARKQGAPFDDKAGSLRMV
RRSGVAGCASPAGDQGVGFETEGGGGSAPKWQCGDYNLMCQYSCDCGGGC
TCVAPTPAVRAWVDGINAQRAARGYAPVQWSAADTMTVYAAMLDGSIGCS
GAASSKAKVGGSGGGGGSGGGGKSGGKAHGKGKAQGKGGKRPHVLRQLRL
DTQRQQQRRRLEVIADEGGYTLETIPDTSAAVDDPSVVDVSVAHTRCTRA
VQDLGSDACKQVAVTRRPDPASPTDSSSNGGGGSGGGGGGGAGAGAGPA*

mRNA from alignment at Contig_86:304415..307075+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_13688 ID=mRNA_13688|Name=jgi.p|Trimin1|351292|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2661bp|location=Sequence derived from alignment at Contig_86:304415..307075+ (Tribonema minus UTEX_B_3156 )
ATGGGAAGGAGGCTCCAGGGGCTAGCGTGGAAGGACCTGCTGCTGCTGCT
GACGTGCTGGGCGTGGGCTGACGCTGCCGCGTGCGGCGTTGGCAGCGTTG
CGTCGGCAGACGGCACGGTTTGCTGCGCATCTTGGTGAGATTTGGATGAC
CACGCCATGCCAGATGCCAGTGGTGTGGCAGCAGCAGAGAGCGCGGAGGT
GTTCATAGCAACAGCAGCAGTGACAATGCTGTCCGCCCATCATTGTCAGT
GCTCATTGTTGGCATGCGGGAAGGATGTCGTGTGCCATTTTTCACCAAGT
TATTGCTCTGGCTGGCCTTGTGTGCCAAGTCGTTGTCCCGCCCGCACACC
GCACACCGCATTTCAAAGATGATAAGGCCAGTGCGAGACCATCTCCATTG
ATAGAACTGAGTTGCTACACGATCGATGATTTGCACGAATCGTTTGGATT
GCTACTTGTGCCCACCCAAACACTGTGAGCACCAAACACTATGTGAGAAT
CGCACGTTGCCACAACTGGAAAGGTCGCTTTGCTTTTCGCTGACGCTGCA
ATAATGCTTCTCTTACCATGGGCCCATGTCTGCACCAGTCGGCGTCTTTC
TCATGAGCAGACCTGCTCAGTTAAGCTTGCCACGCTAATTACTAGCAGCA
GCAGCGCCGCCCCAGGCTGCACTTCAACTCCTGAAGTCTGAGCATTTGTG
AGCTCACAACTGCCGCTTCAAATGTGACTGCACGCGCGGCAACGCTCAGG
TGCGGGACGTGCGACGAGGCGGGCTGCACGAGCAACGCCAACAGCGCCAC
GTGGGCCGTGTCATGCTGCCCCCACATCATCTTGAGGAGCGGCAGGCGCT
GCGACCTGTGGTCCAAGGGCCCATGCATCGGCGACGCAGAAGCACAGTTG
CAAGGGGTGCAAAGCACGCCTGCTGGAGCGCCACTGGCGGCACCGGAGCA
GGGGCTGGGGCAACGTGAACTTGATGGGGTGCAGGAGGGGCATGGCAGTG
GCGGCGGCGGGGGCGAGCGGGAATGGGGGCAGGAGGCGAGCGGGGGCGAG
AGGGAATGGGGGCAGGAGGCGAGGGCGCTGAACCGGCTGGACGTGCCGGC
AGCACTGTGGATGATCACCAGCAACGCCGCACAGGTACGTCGACAGTCAA
GTACTTCAAAAGTAGTTTACCTGCCATGGTGGCACAATGTGTTGCAGTAG
TGTGGATGATCTATGTGTTCTCGGCCCTGTGGCATTATCTGTGGCGAAGT
TCAAGAGACGTCTGGGTGGATGCTGCGTCTGTGTGCATCAGACGCCTCGA
AGGTTTTCAACTTGCTGTACATCACTGCTCTTTTCAGGTGTGGTCGGGGA
ACTTTGACGGCACGACGGCGTCCTTCACGTGCAACTACGACGCCTGCTCC
ATCTCAGACCTCGCGCCGTTCGGCTTCGACGCGAACACGCTCTCCAGCGC
GCGCGCCGGCAAGTGCTACGCGCTCGAAATCTACGACACGGCGCAGCAGG
CGTCGCCGCCGCTGTTCTCGCTGCGCGCGGGCCACGAGGTGTCGTTCGCA
AGAAAGCAGGGCGCGCCGTTCGACGACAAAGCGGGCAGTCTGCGTATGGT
GCGGCGCAGCGGCGTCGCGGGCTGCGCGTCGCCCGCAGGCGACCAGGGCG
TGGGGTTCGAGACCGAGGGCGGCGGCGGCAGCGCTCCGAAGTGGCAGTGC
GGCGACTACAACCTCATGTGCCAGTACTCCTGCGACTGCGGCGGCGGCTG
CACGTGCGTCGCGCCGACGCCGGCCGTGCGCGCGTGGGTCGACGGCATCA
ACGCGCAGCGCGCGGCGCGCGGCTACGCGCCCGTCCAGTGGAGCGCCGCC
GACACCATGACGGTGTACGCGGCGATGCTGGACGGCAGCATCGGATGCTC
TGGCGCGGCGTCCTCAAAGGCCAAGGTCGGCGGCAGCGGCGGCGGCGGCG
GCAGCGGCGGCGGCGGCAAGTCGGGGGGGAAGGCGCACGGCAAAGGCAAA
GCGCAGGGCAAAGGCGGCAAGCGCCCGCACGTCCTCCGGCAGCTTAGACT
AGATACGCAGCGTCAGCAGCAGCGGCGGCGGCTGGAGGTGATCGCGGACG
AGGGCGGCTACACGCTGGAGACGATCCCCGACACGAGCGCCGCCGTCGAC
GACCCGAGCGTCGTGGACGTGTCCGTTGCGCACACGCGCTGCACGCGCGC
CGTCCAAGACCTCGGCTCCGACGCGTGCAAGCAGGTCGCCGTGACACGCC
GCCCCGACCCCGCTTCGCCGACGGACAGCAGCAGCAACGGCGGTGGCGGC
AGCGGCGGCGGCGGCGGCGGCGGTGCCGGTGCCGGTGCCGGTCCCGCATG
AGGTGCACGTGTACAGGAGGACGCCAACTCGTCGTACGGAAGCGTGAAAC
AGTGCTACTACTACTAGTTCATGTTATTCAGACGGCGGCTCCTGCTTGAG
CATCGTTCGTTCTGCTGGCTCTGCCATAGTGCTACGGCGCTTACCGACTG
CTGCGGCGCCCAACATGACGCTGCAGCGCAAGCGCGCTGGCGGGCGTGCA
ATCATATAACCCGTCGTATGCTCTCACTCACCTTATGCTGCCTCCTTCAG
CACCAAATTATTACAGAATACAACCACACAATCACTGCACCTTTTTGTGC
TGGTGTTGCAA

Coding sequence (CDS) from alignment at Contig_86:304415..307075+

>mRNA_13688 ID=mRNA_13688|Name=jgi.p|Trimin1|351292|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1500bp|location=Sequence derived from alignment at Contig_86:304415..307075+ (Tribonema minus UTEX_B_3156 )
ATGGGAAGGAGGCTCCAGGGGCTAGCGTGGAAGGACCTGCTGCTGCTGCT
GACGTGCTGGGCGTGGGCTGACGCTGCCGCGTGCGGCGTTGGCAGCGTTG
CGTGCGGGACGTGCGACGAGGCGGGCTGCACGAGCAACGCCAACAGCGCC
ACGTGGGCCGTGTCATGCTGCCCCCACATCATCTTGAGGAGCGGCAGGCG
CTGCGACCTGTGGTCCAAGGGCCCATGCATCGGCGACGCAGAAGCACAGT
TGCAAGGGGTGCAAAGCACGCCTGCTGGAGCGCCACTGGCGGCACCGGAG
CAGGGGCTGGGGCAACGTGAACTTGATGGGGTGCAGGAGGGGCATGGCAG
TGGCGGCGGCGGGGGCGAGCGGGAATGGGGGCAGGAGGCGAGCGGGGGCG
AGAGGGAATGGGGGCAGGAGGCGAGGGCGCTGAACCGGCTGGACGTGCCG
GCAGCACTGTGGATGATCACCAGCAACGCCGCACAGGTGTGGTCGGGGAA
CTTTGACGGCACGACGGCGTCCTTCACGTGCAACTACGACGCCTGCTCCA
TCTCAGACCTCGCGCCGTTCGGCTTCGACGCGAACACGCTCTCCAGCGCG
CGCGCCGGCAAGTGCTACGCGCTCGAAATCTACGACACGGCGCAGCAGGC
GTCGCCGCCGCTGTTCTCGCTGCGCGCGGGCCACGAGGTGTCGTTCGCAA
GAAAGCAGGGCGCGCCGTTCGACGACAAAGCGGGCAGTCTGCGTATGGTG
CGGCGCAGCGGCGTCGCGGGCTGCGCGTCGCCCGCAGGCGACCAGGGCGT
GGGGTTCGAGACCGAGGGCGGCGGCGGCAGCGCTCCGAAGTGGCAGTGCG
GCGACTACAACCTCATGTGCCAGTACTCCTGCGACTGCGGCGGCGGCTGC
ACGTGCGTCGCGCCGACGCCGGCCGTGCGCGCGTGGGTCGACGGCATCAA
CGCGCAGCGCGCGGCGCGCGGCTACGCGCCCGTCCAGTGGAGCGCCGCCG
ACACCATGACGGTGTACGCGGCGATGCTGGACGGCAGCATCGGATGCTCT
GGCGCGGCGTCCTCAAAGGCCAAGGTCGGCGGCAGCGGCGGCGGCGGCGG
CAGCGGCGGCGGCGGCAAGTCGGGGGGGAAGGCGCACGGCAAAGGCAAAG
CGCAGGGCAAAGGCGGCAAGCGCCCGCACGTCCTCCGGCAGCTTAGACTA
GATACGCAGCGTCAGCAGCAGCGGCGGCGGCTGGAGGTGATCGCGGACGA
GGGCGGCTACACGCTGGAGACGATCCCCGACACGAGCGCCGCCGTCGACG
ACCCGAGCGTCGTGGACGTGTCCGTTGCGCACACGCGCTGCACGCGCGCC
GTCCAAGACCTCGGCTCCGACGCGTGCAAGCAGGTCGCCGTGACACGCCG
CCCCGACCCCGCTTCGCCGACGGACAGCAGCAGCAACGGCGGTGGCGGCA
GCGGCGGCGGCGGCGGCGGCGGTGCCGGTGCCGGTGCCGGTCCCGCATGA