mRNA_13683 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|351290
Unique NamemRNA_13683
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|351290 vs. uniprot
Match: A0A835YSW3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSW3_9STRA)

HSP 1 Score: 617 bits (1592), Expect = 5.310e-217
Identity = 402/402 (100.00%), Postives = 402/402 (100.00%), Query Frame = 1 
Query:    1 MAELLHDLKDKMKGALHHGKEQATTKGAELQEKAAPAFERATEKAKALTSKKSGATTGEAGDTVTSXXXXXXXXXXXXXGLTEALAGGTVGGYAATGKTPVSPPPESRREFVGGEGGANNDARVWEPVTGEQTREIGTDTSLVRDTEAVAGERSGGISGXXXXXXDSSVGETVTLNSGAKAFVPRIFGNLQRSEQQXXXXXXXXAQQSRDIDFGAAAADAPTREYESSHGYLESSDIVSGGASASQLDRSAVGATPPQQLEPSAYAEPSSTTATSGSAHEPRPYGDYGLVSSAXXXXXXXXXXXXXXXXXDXXXXXPQXXXXXSASLFGNSNQASSFGSLRPSSPVPLGDLGRQEDRLQGSAQSYGGGSGSGAPQSESAAVREAAEQGHIAAAKADALVQAE 1206
            MAELLHDLKDKMKGALHHGKEQATTKGAELQEKAAPAFERATEKAKALTSKKSGATTGEAGDTVTSXXXXXXXXXXXXXGLTEALAGGTVGGYAATGKTPVSPPPESRREFVGGEGGANNDARVWEPVTGEQTREIGTDTSLVRDTEAVAGERSGGISGXXXXXXDSSVGETVTLNSGAKAFVPRIFGNLQRSEQQXXXXXXXXAQQSRDIDFGAAAADAPTREYESSHGYLESSDIVSGGASASQLDRSAVGATPPQQLEPSAYAEPSSTTATSGSAHEPRPYGDYGLVSSAXXXXXXXXXXXXXXXXXDXXXXXPQXXXXXSASLFGNSNQASSFGSLRPSSPVPLGDLGRQEDRLQGSAQSYGGGSGSGAPQSESAAVREAAEQGHIAAAKADALVQAE
Sbjct:    1 MAELLHDLKDKMKGALHHGKEQATTKGAELQEKAAPAFERATEKAKALTSKKSGATTGEAGDTVTSXXXXXXXXXXXXXGLTEALAGGTVGGYAATGKTPVSPPPESRREFVGGEGGANNDARVWEPVTGEQTREIGTDTSLVRDTEAVAGERSGGISGXXXXXXDSSVGETVTLNSGAKAFVPRIFGNLQRSEQQXXXXXXXXAQQSRDIDFGAAAADAPTREYESSHGYLESSDIVSGGASASQLDRSAVGATPPQQLEPSAYAEPSSTTATSGSAHEPRPYGDYGLVSSAXXXXXXXXXXXXXXXXXDXXXXXPQXXXXXSASLFGNSNQASSFGSLRPSSPVPLGDLGRQEDRLQGSAQSYGGGSGSGAPQSESAAVREAAEQGHIAAAKADALVQAE 402
[Close]
BLAST of jgi.p|Trimin1|351290 vs. uniprot
Match: A0A835YJV8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJV8_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.640e-6
Identity = 44/114 (38.60%), Postives = 62/114 (54.39%), Query Frame = 1 
Query:  286 TGKTPVSPPPESRREFVGGEG--GANNDARVWEPVTGEQTREIGTDTSLVRDTEAVAGERSGGISGXXXXXX-----------------DSSVGETVTLNSGAKAFVPRIFGNL 570
            T + PVSPP ES R+F+  +   G+++DARVW+PV+ EQ+R + TDTS  RD + +    S  ISG  XXXX                  SS  +  T +  AK F+P + GN+
Sbjct:  172 TAERPVSPPHESSRDFLNTDAAAGSSSDARVWDPVSTEQSRSVNTDTSFGRDHDVLTRGSSSNISGSGXXXXXXFGVYGGEGAQQQDTGSSSEQQHGTSSGAAKRFIPDVIGNM 285
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351290 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835YSW3_9STRA5.310e-217100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YJV8_9STRA1.640e-638.60Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_86contigContig_86:244302..247453 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|351290|estExt_Genemark1.C_Ctg_860026
Hectar predicted targeting categoryother localisation
TranscriptId351612
TrackFilteredModels1
ProteinId351290
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351290gene_13683Tribonema minus UTEX_B_3156 geneContig_86 244302..247453 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13683_3exon_13683_3Tribonema minus UTEX_B_3156 exonContig_86 244302..246019 -
exon_13683_2exon_13683_2Tribonema minus UTEX_B_3156 exonContig_86 246701..246766 -
exon_13683_1exon_13683_1Tribonema minus UTEX_B_3156 exonContig_86 247421..247453 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_13683UTR3_13683Tribonema minus UTEX_B_3156 three_prime_UTRContig_86 244302..244909 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13683CDS_13683Tribonema minus UTEX_B_3156 CDSContig_86 247421..247453 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351290Trimin1|351290|estExt_Genemark1.C_Ctg_860026Tribonema minus UTEX_B_3156 polypeptideContig_86 244910..247453 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13683 ID=mRNA_13683|Name=jgi.p|Trimin1|351290|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1817bp|location=Sequence derived from alignment at Contig_86:244302..247453- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGAACTTCTACACGACCTGAAGGACAAGATGAAGGGTGCGCTCCA
CCACGGGAAGGAGCAGGCGACTACAAAGGGAGCTGAGCTGCAGGAGAAGG
CGGCACCCGCCTTCGAGCGTGCGACGGAGAAGGCCAAGGCCCTCACCTCC
AAGAAGTCCGGCGCGACCACTGGCGAAGCAGGCGACACTGTTACGTCCGG
CGAAACCGCCACTGAGGGGACGACGACCACCAGCGGTGGCCTGACGGAGG
CCCTGGCAGGGGGCACCGTAGGGGGCTACGCCGCAACAGGCAAGACCCCC
GTGTCGCCGCCGCCGGAGTCGCGCAGGGAGTTCGTGGGGGGCGAGGGTGG
CGCGAACAATGATGCGCGCGTGTGGGAGCCCGTGACCGGTGAGCAGACGC
GCGAGATCGGCACGGACACGTCCCTCGTGCGCGACACGGAGGCGGTGGCG
GGCGAGCGCAGCGGCGGCATCAGCGGCGGCGGAGGCGGCGGCGGCGACAG
CAGCGTCGGCGAGACGGTGACGCTCAACAGCGGCGCCAAGGCGTTCGTGC
CGCGCATCTTTGGCAACCTGCAGCGCTCCGAGCAGCAGCAGCAGGGCGGC
GACAGCAGCAGTGCTCAGCAGTCGCGCGACATCGACTTCGGCGCCGCCGC
CGCCGACGCCCCTACACGCGAGTATGAGTCCAGCCATGGTTATTTGGAGT
CCAGCGACATCGTCAGCGGCGGCGCGTCTGCGAGCCAGCTGGACCGCTCT
GCCGTGGGCGCCACGCCGCCGCAGCAGCTCGAGCCGAGCGCGTACGCGGA
GCCGTCCTCCACGACCGCGACGTCGGGCAGCGCGCACGAGCCGCGCCCCT
ACGGCGACTACGGCCTGGTGAGCTCCGCAGGCGGCGGCGGCGGCGGCGGC
GGCGGCGCAGGCGGTTTCTTTGCTTCCCCAGACGCGTCATCTTCTACGCC
ACAGGGCGGCGCCGGCGGCAGCGCTTCGCTGTTCGGCAATAGCAACCAGG
CGAGCTCCTTCGGGTCGCTGCGGCCGTCGTCGCCCGTGCCGCTCGGGGAC
CTGGGCCGGCAGGAGGACCGCCTGCAGGGCAGCGCTCAGTCATATGGCGG
CGGCAGCGGCAGCGGCGCGCCGCAGAGCGAGAGCGCGGCGGTGCGGGAGG
CTGCGGAGCAGGGGCACATCGCTGCCGCGAAGGCGGACGCGCTGGTGCAG
GCAGAGTAGTGAGGTCGGTGTAGAGGGGGAAGTCAATTGCCGTTGGCAGG
TACAAGGGGAAGGAGGGGGCGGCGGTGGTTGGGTGAGGGCATGTTGCGGC
GATGAGCAGCAGGGCATGATCTTTGCTAGCAGTGCAGGCAGCAGCAAACA
TGCGGATCAATTGCTGTAGCGGCCGTCACCGCGTCGACACAAACAACAAA
CTGCACATAGAGTAGCAAGCTGTACAAGAGATCAGTGAGCGATAGTGCAT
ACATGGCAGACAAGTCGAGGCAGGGCGTTAGGCTCCTTCTGCCCCTCGAT
GTCATACTTCCACCCAAATTCCCGCGGGGTATGAGCACTGTGTAAAGCGC
CGGTGTGTATGCGTGTGCTGCTAACTGGTGCGGTTCAGTACGACGCCATG
CACTGCTATCCCTGGTATTGTATCACTACCCCCCCTCTGCAAGCGCAGTT
GCTCAGGGGATACATCTGACATTCGCCACCCTGACTTCTGTATGTGATGA
TGCACCGAGTGCACAAATGCACGTGCATGCGGCAATGACAAATTAGATGT
ACGCACAATTTTGGACTCGTTGAATGTGTTCTGCTGCAATATTGCTCGCT
CCCCCACCAGTAGAAAC
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protein sequence of jgi.p|Trimin1|351290

>Trimin1|351290|estExt_Genemark1.C_Ctg_860026 ID=Trimin1|351290|estExt_Genemark1.C_Ctg_860026|Name=jgi.p|Trimin1|351290|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=403bp
MAELLHDLKDKMKGALHHGKEQATTKGAELQEKAAPAFERATEKAKALTS
KKSGATTGEAGDTVTSGETATEGTTTTSGGLTEALAGGTVGGYAATGKTP
VSPPPESRREFVGGEGGANNDARVWEPVTGEQTREIGTDTSLVRDTEAVA
GERSGGISGGGGGGGDSSVGETVTLNSGAKAFVPRIFGNLQRSEQQQQGG
DSSSAQQSRDIDFGAAAADAPTREYESSHGYLESSDIVSGGASASQLDRS
AVGATPPQQLEPSAYAEPSSTTATSGSAHEPRPYGDYGLVSSAGGGGGGG
GGAGGFFASPDASSSTPQGGAGGSASLFGNSNQASSFGSLRPSSPVPLGD
LGRQEDRLQGSAQSYGGGSGSGAPQSESAAVREAAEQGHIAAAKADALVQ
AE*
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mRNA from alignment at Contig_86:244302..247453-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13683 ID=mRNA_13683|Name=jgi.p|Trimin1|351290|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3152bp|location=Sequence derived from alignment at Contig_86:244302..247453- (Tribonema minus UTEX_B_3156 )
ATGGCTGAACTTCTACACGACCTGAAGGACAAGGTGGGTGCTCGGTCATT
TGCGCCATGCAAGCGCCAGCAGCACACGGCATTCACATTTCGTGCCAACC
TTCCTTGATAAGAAGGAGGTGAGTGTGTTGTATGTGTTGTATACTGCACT
CGCGAGCACAGAAGCTGTGCAGTGCAGGGCAGCTTTCAAGACACGGTTCT
TGCGCTGTCGTACTGTAGTGGCACAGGGTACAACGACGTGCTCGTCACCC
CTGGTTGTGAGTTGCGAGCACAGTATTTTTTGTCTTACTGCGTTGCAGAA
GCCTTCACGCACAATCACACTTCTGGTCACATCAAGATTGCTTGCTGTAA
AATTCATACTTCTTGAAGTATCATTTTTATTTGTCGGTTTGCAGTCATTT
TTATTTGTCGGTTTGGTGTGTGACAGATGCTTCACAACCAGATTTATCGT
CAGTTGTAACTTGCCTCATGCATGCTGGATCATGATTTGTGTCTCAGGAC
AAGATGTCCGCTATGGTCATGCGCAACAATGTGCCATGATTGGGCGCTTC
GTGCAATGTCAAGCAGGCCCTGTCATACAAACGTGATGACTGCAGTACGC
AAATTACGACATCGATTCTTGCCAAGATATGAATTCGAAGTTGTTGGCAC
TCATCGTTTGCCTCTGCTTGACCTGCTGACCTACCAGATGAAGGGTGCGC
TCCACCACGGGAAGGAGCAGGCGACTACAAAGGGAGCTGAGCTGCAGGAG
AAGGTGAGCCTTCTTTGTGAATAGCATTCACGGCTTCTTCAGTAGCGAAA
CAACGCGTAGTATTTGAAGGTCAAACAGCTCACAGTATGTGATTAGCTTG
ACATGTGTTGCAGCTGTATTCATCAATGGTTGGATTTCAATCATTGATAT
TTCGACCGCAAAGGGAGCCAAGCTACAGGAGCAGGTGAGCCTTCTATGTG
AACGGCGTCCACTGCTCCTTGTGTGCAACAAAGCGCAGTATGGGATTAGC
TTAGCATGTTGTGCTGATGTATTTATCAATGATTGGTTTTCAATCAATTG
ATTATTCGATCACAAATAGATCTGAGCTACAGAAGCAGGTGAGCCTTTTT
ATGTGAACGGCGACTACCACTCCATGCGTGAAACATCGCGCAGTTTGGGA
TTAGCTCAATTGACACGTCTCGCAGCAGATGTATCAATCGATAATTGGTT
TTCAAATTTTGATTCTTATGGCTGTGGTACAGACCGCAGGAATTATTGCA
CACTTCACCAAAAATGACTCAAACCTTTTGTTAAGTTTGTAGCAATGGCC
TGCGGCAGTTGCTTTACACGCGCATGACAGCTGCTTCATTTTCACATCAG
GTGCACACCACTTCAGCCTCGCACATGCAATGTGGCAACTACACTAATGA
CGCTGCTGCTATCAAATTCATCACGCGACGTCAGGCGGCACCCGCCTTCG
AGCGTGCGACGGAGAAGGCCAAGGCCCTCACCTCCAAGAAGTCCGGCGCG
ACCACTGGCGAAGCAGGCGACACTGTTACGTCCGGCGAAACCGCCACTGA
GGGGACGACGACCACCAGCGGTGGCCTGACGGAGGCCCTGGCAGGGGGCA
CCGTAGGGGGCTACGCCGCAACAGGCAAGACCCCCGTGTCGCCGCCGCCG
GAGTCGCGCAGGGAGTTCGTGGGGGGCGAGGGTGGCGCGAACAATGATGC
GCGCGTGTGGGAGCCCGTGACCGGTGAGCAGACGCGCGAGATCGGCACGG
ACACGTCCCTCGTGCGCGACACGGAGGCGGTGGCGGGCGAGCGCAGCGGC
GGCATCAGCGGCGGCGGAGGCGGCGGCGGCGACAGCAGCGTCGGCGAGAC
GGTGACGCTCAACAGCGGCGCCAAGGCGTTCGTGCCGCGCATCTTTGGCA
ACCTGCAGCGCTCCGAGCAGCAGCAGCAGGGCGGCGACAGCAGCAGTGCT
CAGCAGTCGCGCGACATCGACTTCGGCGCCGCCGCCGCCGACGCCCCTAC
ACGCGAGTATGAGTCCAGCCATGGTTATTTGGAGTCCAGCGACATCGTCA
GCGGCGGCGCGTCTGCGAGCCAGCTGGACCGCTCTGCCGTGGGCGCCACG
CCGCCGCAGCAGCTCGAGCCGAGCGCGTACGCGGAGCCGTCCTCCACGAC
CGCGACGTCGGGCAGCGCGCACGAGCCGCGCCCCTACGGCGACTACGGCC
TGGTGAGCTCCGCAGGCGGCGGCGGCGGCGGCGGCGGCGGCGCAGGCGGT
TTCTTTGCTTCCCCAGACGCGTCATCTTCTACGCCACAGGGCGGCGCCGG
CGGCAGCGCTTCGCTGTTCGGCAATAGCAACCAGGCGAGCTCCTTCGGGT
CGCTGCGGCCGTCGTCGCCCGTGCCGCTCGGGGACCTGGGCCGGCAGGAG
GACCGCCTGCAGGGCAGCGCTCAGTCATATGGCGGCGGCAGCGGCAGCGG
CGCGCCGCAGAGCGAGAGCGCGGCGGTGCGGGAGGCTGCGGAGCAGGGGC
ACATCGCTGCCGCGAAGGCGGACGCGCTGGTGCAGGCAGAGTAGTGAGGT
CGGTGTAGAGGGGGAAGTCAATTGCCGTTGGCAGGTACAAGGGGAAGGAG
GGGGCGGCGGTGGTTGGGTGAGGGCATGTTGCGGCGATGAGCAGCAGGGC
ATGATCTTTGCTAGCAGTGCAGGCAGCAGCAAACATGCGGATCAATTGCT
GTAGCGGCCGTCACCGCGTCGACACAAACAACAAACTGCACATAGAGTAG
CAAGCTGTACAAGAGATCAGTGAGCGATAGTGCATACATGGCAGACAAGT
CGAGGCAGGGCGTTAGGCTCCTTCTGCCCCTCGATGTCATACTTCCACCC
AAATTCCCGCGGGGTATGAGCACTGTGTAAAGCGCCGGTGTGTATGCGTG
TGCTGCTAACTGGTGCGGTTCAGTACGACGCCATGCACTGCTATCCCTGG
TATTGTATCACTACCCCCCCTCTGCAAGCGCAGTTGCTCAGGGGATACAT
CTGACATTCGCCACCCTGACTTCTGTATGTGATGATGCACCGAGTGCACA
AATGCACGTGCATGCGGCAATGACAAATTAGATGTACGCACAATTTTGGA
CTCGTTGAATGTGTTCTGCTGCAATATTGCTCGCTCCCCCACCAGTAGAA
AC
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Coding sequence (CDS) from alignment at Contig_86:244302..247453-

>mRNA_13683 ID=mRNA_13683|Name=jgi.p|Trimin1|351290|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1209bp|location=Sequence derived from alignment at Contig_86:244302..247453- (Tribonema minus UTEX_B_3156 )
ATGGCTGAACTTCTACACGACCTGAAGGACAAGATGAAGGGTGCGCTCCA
CCACGGGAAGGAGCAGGCGACTACAAAGGGAGCTGAGCTGCAGGAGAAGG
CGGCACCCGCCTTCGAGCGTGCGACGGAGAAGGCCAAGGCCCTCACCTCC
AAGAAGTCCGGCGCGACCACTGGCGAAGCAGGCGACACTGTTACGTCCGG
CGAAACCGCCACTGAGGGGACGACGACCACCAGCGGTGGCCTGACGGAGG
CCCTGGCAGGGGGCACCGTAGGGGGCTACGCCGCAACAGGCAAGACCCCC
GTGTCGCCGCCGCCGGAGTCGCGCAGGGAGTTCGTGGGGGGCGAGGGTGG
CGCGAACAATGATGCGCGCGTGTGGGAGCCCGTGACCGGTGAGCAGACGC
GCGAGATCGGCACGGACACGTCCCTCGTGCGCGACACGGAGGCGGTGGCG
GGCGAGCGCAGCGGCGGCATCAGCGGCGGCGGAGGCGGCGGCGGCGACAG
CAGCGTCGGCGAGACGGTGACGCTCAACAGCGGCGCCAAGGCGTTCGTGC
CGCGCATCTTTGGCAACCTGCAGCGCTCCGAGCAGCAGCAGCAGGGCGGC
GACAGCAGCAGTGCTCAGCAGTCGCGCGACATCGACTTCGGCGCCGCCGC
CGCCGACGCCCCTACACGCGAGTATGAGTCCAGCCATGGTTATTTGGAGT
CCAGCGACATCGTCAGCGGCGGCGCGTCTGCGAGCCAGCTGGACCGCTCT
GCCGTGGGCGCCACGCCGCCGCAGCAGCTCGAGCCGAGCGCGTACGCGGA
GCCGTCCTCCACGACCGCGACGTCGGGCAGCGCGCACGAGCCGCGCCCCT
ACGGCGACTACGGCCTGGTGAGCTCCGCAGGCGGCGGCGGCGGCGGCGGC
GGCGGCGCAGGCGGTTTCTTTGCTTCCCCAGACGCGTCATCTTCTACGCC
ACAGGGCGGCGCCGGCGGCAGCGCTTCGCTGTTCGGCAATAGCAACCAGG
CGAGCTCCTTCGGGTCGCTGCGGCCGTCGTCGCCCGTGCCGCTCGGGGAC
CTGGGCCGGCAGGAGGACCGCCTGCAGGGCAGCGCTCAGTCATATGGCGG
CGGCAGCGGCAGCGGCGCGCCGCAGAGCGAGAGCGCGGCGGTGCGGGAGG
CTGCGGAGCAGGGGCACATCGCTGCCGCGAAGGCGGACGCGCTGGTGCAG
GCAGAGTAG
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