mRNA_13644 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|175915
Unique Name	mRNA_13644
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

[Close]

BLAST of jgi.p|Trimin1|175915 vs. uniprot
Match: A0A836CNV3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNV3_9STRA)

HSP 1 Score: 218 bits (554), Expect = 1.190e-65
Identity = 313/313 (100.00%), Postives = 313/313 (100.00%), Query Frame = 1

Query:    1 MGSRDEALEAEAGALLRRLGVQLPLANPSRVDLSQKGITAREAVTLCRALRAATSLQVLKLCYNELGDGGTQALAAAVDRHVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDALQSCAALGGGLEXXXXXXXXXXXXXXXXXXXXXQVNKSLTRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAHVAAVLPSLSLEHLDLGFNQIGTVGVKALMKALLQCVSLTR 939
            MGSRDEALEAEAGALLRRLGVQLPLANPSRVDLSQKGITAREAVTLCRALRAATSLQVLKLCYNELGDGGTQALAAAVDRHVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDALQSCAALGGGLEXXXXXXXXXXXXXXXXXXXXXQVNKSLTRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAHVAAVLPSLSLEHLDLGFNQIGTVGVKALMKALLQCVSLTR
Sbjct:    1 MGSRDEALEAEAGALLRRLGVQLPLANPSRVDLSQKGITAREAVTLCRALRAATSLQVLKLCYNELGDGGTQALAAAVDRHVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDALQSCAALGGGLEXXXXXXXXXXXXXXXXXXXXXQVNKSLTRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAHVAAVLPSLSLEHLDLGFNQIGTVGVKALMKALLQCVSLTR 313

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|175915 vs. uniprot

BLAST of jgi.p|Trimin1|175915 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A836CNV3_9STRA	1.190e-65	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_131	contig	Contig_131:376407..378282 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|175915\|e_gw1.131.60.1
BRITE	ko00000,ko00001,ko04131
KEGG Pathway	ko04621,map04621
KEGG ko	ko:K20523,ko:K20865
Description	interleukin-8 biosynthetic process
COG category	S
Max annot lvl	2759\|Eukaryota
EggNOG OGs	KOG4308@1\|root,KOG4308@2759\|Eukaryota
Evalue	2.3e-06
Seed ortholog	2880.D7FK51
Hectar predicted targeting category	other localisation
TranscriptId	176237
Track	FilteredModels1
ProteinId	175915

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|175915	gene_13644	Tribonema minus UTEX_B_3156	gene	Contig_131 376407..378282 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_13644_1	exon_13644_1	Tribonema minus UTEX_B_3156	exon	Contig_131 376407..377078 +
exon_13644_2	exon_13644_2	Tribonema minus UTEX_B_3156	exon	Contig_131 378013..378282 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_13644	CDS_13644	Tribonema minus UTEX_B_3156	CDS	Contig_131 376407..377078 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|175915	Trimin1\|175915\|e_gw1.131.60.1	Tribonema minus UTEX_B_3156	polypeptide	Contig_131 376407..378282 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_131:376407..378282+
coding sequence from alignment at Contig_131:376407..378282+

spliced messenger RNA

>mRNA_13644 ID=mRNA_13644|Name=jgi.p|Trimin1|175915|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=942bp|location=Sequence derived from alignment at Contig_131:376407..378282+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCAGCAGGGACGAGGCACTGGAGGCTGAGGCGGGGGCCCTCCTCAG
GCGCCTTGGAGTGCAGCTGCCCCTCGCCAATCCCTCCCGCGTGGACCTGT
CTCAGAAGGGCATCACGGCCAGGGAGGCAGTCACACTCTGCAGGGCTCTG
AGGGCGGCGACCTCGCTGCAGGTGCTGAAGCTCTGCTACAACGAGCTGGG
CGACGGGGGAACCCAAGCTCTGGCGGCAGCGGTGGATCGCCATGTCTCGC
TGCAGACGCTGGACCTCGGCTTCAATTGCATTGGAGACGATGGAGCGGCG
TGCCTGGCGCGGTCCCTTTGCAGCAACCGCACCTTGCGCACCTTGTATCT
AAGTGGCAACAGCATAGGAGAGGCGGGAGCCCGAGCACTTGCGGATGCCC
TCCAGAGCTGCGCGGCGCTAGGCGGCGGCCTGGAAACCCTGCACCTTACG
GGTAACCGCATAGGCCCGGGTGGGGCTTGCGCGTTAGCTACCGCCTTGCA
AGTAAACAAGTCTTTGACCCGATTATATCTGGGCGGCGGCGGGATCGAGG
TGCAGGGTGCCTGCGCGGTGGCGGCGGCGCTCGCCGTCAACAATACGCTG
CGGTATCTTTACCTCAGCGCAAATAGGATTGGCGACCAGGGACTATTCTC
CATCGCTCAAAGCTTACAGCAGAACCGCTGCGTGCGGCTGCTGGAGCTCG
GCTTCAACCGCATCGGCCCCGCGGGCGTGGAGTCGCTCGCCAACAGCCTG
TGGGGCTACGCGGAGCTGCGGTCGCTGCACCTGGACAACAACGTGGTGGG
CGACCGCGGCGCGGCGCACGTCGCGGCGGTGCTGCCGTCGCTGAGCTTGG
AGCACCTCGACCTCGGCTTCAACCAGATCGGCACGGTGGGCGTCAAGGCG
CTCATGAAGGCGCTGCTGCAGTGCGTCTCGCTGACCAGGTGA

protein sequence of jgi.p|Trimin1|175915

>Trimin1|175915|e_gw1.131.60.1 ID=Trimin1|175915|e_gw1.131.60.1|Name=jgi.p|Trimin1|175915|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=314bp
MGSRDEALEAEAGALLRRLGVQLPLANPSRVDLSQKGITAREAVTLCRAL
RAATSLQVLKLCYNELGDGGTQALAAAVDRHVSLQTLDLGFNCIGDDGAA
CLARSLCSNRTLRTLYLSGNSIGEAGARALADALQSCAALGGGLETLHLT
GNRIGPGGACALATALQVNKSLTRLYLGGGGIEVQGACAVAAALAVNNTL
RYLYLSANRIGDQGLFSIAQSLQQNRCVRLLELGFNRIGPAGVESLANSL
WGYAELRSLHLDNNVVGDRGAAHVAAVLPSLSLEHLDLGFNQIGTVGVKA
LMKALLQCVSLTR*

mRNA from alignment at Contig_131:376407..378282+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_13644 ID=mRNA_13644|Name=jgi.p|Trimin1|175915|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1876bp|location=Sequence derived from alignment at Contig_131:376407..378282+ (Tribonema minus UTEX_B_3156 )
ATGGGCAGCAGGGACGAGGCACTGGAGGCTGAGGCGGGGGCCCTCCTCAG
GCGCCTTGGAGTGCAGCTGCCCCTCGCCAATCCCTCCCGCGTGGACCTGT
CTCAGAAGGGCATCACGGCCAGGGAGGCAGTCACACTCTGCAGGGCTCTG
AGGGCGGCGACCTCGCTGCAGGTGCTGAAGCTCTGCTACAACGAGCTGGG
CGACGGGGGAACCCAAGCTCTGGCGGCAGCGGTGGATCGCCATGTCTCGC
TGCAGACGCTGGACCTCGGCTTCAATTGCATTGGAGACGATGGAGCGGCG
TGCCTGGCGCGGTCCCTTTGCAGCAACCGCACCTTGCGCACCTTGTATCT
AAGTGGCAACAGCATAGGAGAGGCGGGAGCCCGAGCACTTGCGGATGCCC
TCCAGAGCTGCGCGGCGCTAGGCGGCGGCCTGGAAACCCTGCACCTTACG
GGTAACCGCATAGGCCCGGGTGGGGCTTGCGCGTTAGCTACCGCCTTGCA
AGTAAACAAGTCTTTGACCCGATTATATCTGGGCGGCGGCGGGATCGAGG
TGCAGGGTGCCTGCGCGGTGGCGGCGGCGCTCGCCGTCAACAATACGCTG
CGGTATCTTTACCTCAGCGCAAATAGGATTGGCGACCAGGGACTATTCTC
CATCGCTCAAAGCTTACAGCAGGTGAGAGCTCCGAACAACATGAGTTGAC
GTGCTGTGCGCTGTCGGTGCACTCTTCAGTCGCTGCCACAGCGCCAACAA
CGAGGCGCTGAGTATTGTGGCACGCAATTGCGGGCGGCCTTGTGATATAA
ATGTCTCGGTCACTTCCCGCTGGTGTTGGTGGCGCTCACTGGGCACCTGA
CATGTTCTTATACGGCTGCACAGAGCAGGCAGTGCTGTCAGGCCTCGCGT
CAGCAGGCGCTCTAGCCTGCGCCTCCTTGCAGTCATCTGTTGAGAGCACT
GTGATCACGCAGCACAAAGTCGTTGCGTGCACTGCTCACGTGGCGTGGCT
CCTGCAGATGGTCGTATTTGGCAGCCAGCTGCTTGCAGTTTCCAAGGAAG
GTTGGTGACGTCGCAGGCGCGTGAGCTGGCACGTCCATTCTAGAATGACA
CCCGGCTCTTGGCCAGTTGCTCCTACTTACCTGAGCACAGTCGTATGCTT
CATCCAGCTGGTTCCATTCGGTCAAAGGATTTCGCCTGTTGAAGTTTACT
TCTATTGATGAATGAACGTTTACGGTAGGCATTACAAATATTCCCACCAA
CACAGCTTGCGACCTCTTGTACCCAGCAGACAAGGCAGTCTCACCTTTTC
AATTGAGCTCTGGTGCGGCCTGTTGGCGCAACTTCAAATGCACCTTTACA
GCTCATGGCGCAGTGCTTCCCGTCTCAGTCATCGCTGACATACAGCACTC
GAATGCCGCACAGACGCCAGACGACTGTGTCATGCGTCACTACTTTCAGC
GGTCACTGGTGGCTGGCCGCAGCTCGGCTGACGTGCTGCCGTCAAGGCGC
GCTCCCCGGTGTGCCCATCGCCATCGCTTGCATGTTGGTCAACTGCCTCA
CCCCCCCCACCAAATCTGCTGCCCCCCCACGCGCCTTGGCCCGCGCATGC
GCGCAGAACCGCTGCGTGCGGCTGCTGGAGCTCGGCTTCAACCGCATCGG
CCCCGCGGGCGTGGAGTCGCTCGCCAACAGCCTGTGGGGCTACGCGGAGC
TGCGGTCGCTGCACCTGGACAACAACGTGGTGGGCGACCGCGGCGCGGCG
CACGTCGCGGCGGTGCTGCCGTCGCTGAGCTTGGAGCACCTCGACCTCGG
CTTCAACCAGATCGGCACGGTGGGCGTCAAGGCGCTCATGAAGGCGCTGC
TGCAGTGCGTCTCGCTGACCAGGTGA

Coding sequence (CDS) from alignment at Contig_131:376407..378282+

>mRNA_13644 ID=mRNA_13644|Name=jgi.p|Trimin1|175915|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=942bp|location=Sequence derived from alignment at Contig_131:376407..378282+ (Tribonema minus UTEX_B_3156 )
ATGGGCAGCAGGGACGAGGCACTGGAGGCTGAGGCGGGGGCCCTCCTCAG
GCGCCTTGGAGTGCAGCTGCCCCTCGCCAATCCCTCCCGCGTGGACCTGT
CTCAGAAGGGCATCACGGCCAGGGAGGCAGTCACACTCTGCAGGGCTCTG
AGGGCGGCGACCTCGCTGCAGGTGCTGAAGCTCTGCTACAACGAGCTGGG
CGACGGGGGAACCCAAGCTCTGGCGGCAGCGGTGGATCGCCATGTCTCGC
TGCAGACGCTGGACCTCGGCTTCAATTGCATTGGAGACGATGGAGCGGCG
TGCCTGGCGCGGTCCCTTTGCAGCAACCGCACCTTGCGCACCTTGTATCT
AAGTGGCAACAGCATAGGAGAGGCGGGAGCCCGAGCACTTGCGGATGCCC
TCCAGAGCTGCGCGGCGCTAGGCGGCGGCCTGGAAACCCTGCACCTTACG
GGTAACCGCATAGGCCCGGGTGGGGCTTGCGCGTTAGCTACCGCCTTGCA
AGTAAACAAGTCTTTGACCCGATTATATCTGGGCGGCGGCGGGATCGAGG
TGCAGGGTGCCTGCGCGGTGGCGGCGGCGCTCGCCGTCAACAATACGCTG
CGGTATCTTTACCTCAGCGCAAATAGGATTGGCGACCAGGGACTATTCTC
CATCGCTCAAAGCTTACAGCAGAACCGCTGCGTGCGGCTGCTGGAGCTCG
GCTTCAACCGCATCGGCCCCGCGGGCGTGGAGTCGCTCGCCAACAGCCTG
TGGGGCTACGCGGAGCTGCGGTCGCTGCACCTGGACAACAACGTGGTGGG
CGACCGCGGCGCGGCGCACGTCGCGGCGGTGCTGCCGTCGCTGAGCTTGG
AGCACCTCGACCTCGGCTTCAACCAGATCGGCACGGTGGGCGTCAAGGCG
CTCATGAAGGCGCTGCTGCAGTGCGTCTCGCTGACCAGGTGA