mRNA_13643 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|16982
Unique NamemRNA_13643
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|16982 vs. uniprot
Match: A0A836CKS1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKS1_9STRA)

HSP 1 Score: 300 bits (767), Expect = 1.990e-97
Identity = 308/308 (100.00%), Postives = 308/308 (100.00%), Query Frame = 3 
Query:   60 MASAFRVCRPLSFAVDVAADGAGARDWFFEDLRERQDRTWADTRVAKGAELARSGQHAAAIKYYDQALGMCAGHVDAVXXXXXXXXXXXXXXXXXXXXXXXXXLDPTCANARAYLSATLTRLGHMSPQRRRSPTPPTDGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSKEKLYVKPPPQAGGGDYSFVNSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLRRSPKTTILCSRIQYLGGPSTVCGDFKCVVA 983
            MASAFRVCRPLSFAVDVAADGAGARDWFFEDLRERQDRTWADTRVAKGAELARSGQHAAAIKYYDQALGMCAGHVDAVXXXXXXXXXXXXXXXXXXXXXXXXXLDPTCANARAYLSATLTRLGHMSPQRRRSPTPPTDGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSKEKLYVKPPPQAGGGDYSFVNSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLRRSPKTTILCSRIQYLGGPSTVCGDFKCVVA
Sbjct:    1 MASAFRVCRPLSFAVDVAADGAGARDWFFEDLRERQDRTWADTRVAKGAELARSGQHAAAIKYYDQALGMCAGHVDAVXXXXXXXXXXXXXXXXXXXXXXXXXLDPTCANARAYLSATLTRLGHMSPQRRRSPTPPTDGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSKEKLYVKPPPQAGGGDYSFVNSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLRRSPKTTILCSRIQYLGGPSTVCGDFKCVVA 308
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BLAST of jgi.p|Trimin1|16982 vs. uniprot
Match: D7FK49_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FK49_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 3.470e-23
Identity = 67/173 (38.73%), Postives = 84/173 (48.55%), Query Frame = 3 
Query:    3 YNDVLLADKSFYNPFATEAMASAFRVCRPLSFAVDVAAD-----------GAGAR---------------------DWFFEDLRERQDRTWADTRVAKGAELARSGQHAAAIKYYDQALGMCAGHVDAVXXXXXXXXXXXXXXXXXXXXXXXXXLDPTCANARAYLSATLTRL 425
            YN+ LLADKSF+NP A+E MA AF + RP SF +DV  D            AGA+                     +WF++ +R+RQ+R WADTRV KG ELAR GQH AAI  Y QALGMC  H D +                         ++P   NA +YL  T  R+
Sbjct:  191 YNETLLADKSFHNPHASETMADAFGILRPASFVLDVGEDDRPWGGAAGVAAAGAKGATAEGGEADVTTGHGGSEDQNWFYDTVRDRQNRLWADTRVRKGVELARKGQHQAAIDTYTQALGMCPDHDDGLVARGAAFATTGRLRQAVQDLSRALSVNPQNGNASSYLKETRRRM 363
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|16982 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A836CKS1_9STRA1.990e-97100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FK49_ECTSI3.470e-2338.73Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_131contigContig_131:373547..375715 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|16982|CE16981_744
KEGG TC9.A.15.1
BRITEko00000,ko00001,ko02000,ko03029,ko04131
KEGG Pathwayko04136,ko04138,ko04140,map04136,map04138,map04140
KEGG koko:K17908
Preferred nameTTC14
DescriptionTPR repeat
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGs28H66@1|root,2QPJ1@2759|Eukaryota
Evalue7.49e-15
Seed ortholog2880.D7FK49
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-04_005830.1
TranscriptId17304
TrackFilteredModels1
ProteinId16982
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|16982gene_13643Tribonema minus UTEX_B_3156 geneContig_131 373547..375715 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|16982Trimin1|16982|CE16981_744Tribonema minus UTEX_B_3156 polypeptideContig_131 373606..375673 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13643_1exon_13643_1Tribonema minus UTEX_B_3156 exonContig_131 373547..373749 +
exon_13643_2exon_13643_2Tribonema minus UTEX_B_3156 exonContig_131 374129..374182 +
exon_13643_3exon_13643_3Tribonema minus UTEX_B_3156 exonContig_131 374410..374546 +
exon_13643_4exon_13643_4Tribonema minus UTEX_B_3156 exonContig_131 375015..375436 +
exon_13643_5exon_13643_5Tribonema minus UTEX_B_3156 exonContig_131 375504..375715 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_13643UTR5_13643Tribonema minus UTEX_B_3156 five_prime_UTRContig_131 373547..373605 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13643CDS_13643Tribonema minus UTEX_B_3156 CDSContig_131 373606..373749 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_13643UTR3_13643Tribonema minus UTEX_B_3156 three_prime_UTRContig_131 375674..375715 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13643 ID=mRNA_13643|Name=jgi.p|Trimin1|16982|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1028bp|location=Sequence derived from alignment at Contig_131:373547..375715+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GCTACAACGACGTGCTGCTCGCAGACAAGTCCTTCTACAACCCCTTTGCC
ACAGAGGCCATGGCGTCAGCATTCCGCGTGTGTCGGCCGCTGTCATTTGC
CGTGGACGTGGCAGCTGACGGAGCGGGCGCACGGGACTGGTTCTTTGAGG
ACTTGCGCGAGCGGCAGGACCGAACGTGGGCGGACACACGTGTGGCCAAG
GGGGCGGAGCTGGCGAGATCAGGCCAGCATGCGGCGGCCATCAAGTACTA
TGACCAGGCCCTCGGCATGTGCGCGGGACACGTGGACGCAGTGGTGGCCA
GAGGCGCGGCGCTGGCGAGCCTGGGGCAGCTGCGGCAGGCGGTGGAGGCG
TTCCAGAGCGCGCTGAGGCTGGACCCGACTTGCGCGAACGCCAGGGCATA
TCTCAGCGCGACGCTGACACGCCTGGGCCACATGTCTCCGCAACGGCGGC
GATCTCCCACCCCCCCTACTGACGGCCGGACACCTCAGCCAGCGAGCGCA
AGCAGATCCACAGCAGCCGGCAGCGGCGCAGCGCTACCCGCAGCGGCCAG
CACGGTCGTGCTGCCCGTCTCCAAGGAGAAGCTGTACGTCAAGCCGCCGC
CGCAGGCGGGGGGCGGCGATTACAGCTTCGTCAACTCGGAGGACAGCGAG
GGGGGCTCGCAGGGAACGGGCGGGGGGAAGCGCGAGAAGCGGCGCGACAG
GCGGAAACACACCAAACACGAGAAGAAGAAGAAGCGGAAAAAGGAAAAGC
ACGCCAGCAGCGGCGGCGGCAGCAGCAAGCGCAGCGGCGACAAAAAGAAA
CACAGCAGCAGGAAGCCGCGCCGCGCCGCGGCGGCGTCCCATCTGGCACG
GCAGCAGCGGCAGCAGCAGCGGCAGCAGCAGCGGCAGCTGCGGCGGAGTC
CGAAGACGACGATCTTGTGCAGCCGCATCCAATACTTGGGCGGACCAAGC
ACAGTCTGTGGGGATTTTAAATGCGTCGTCGCATAGCCTTGTAATCCACT
GACATGGTGAATGCACGTGTGTTTCGTG
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protein sequence of jgi.p|Trimin1|16982

>Trimin1|16982|CE16981_744 ID=Trimin1|16982|CE16981_744|Name=jgi.p|Trimin1|16982|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=309bp
MASAFRVCRPLSFAVDVAADGAGARDWFFEDLRERQDRTWADTRVAKGAE
LARSGQHAAAIKYYDQALGMCAGHVDAVVARGAALASLGQLRQAVEAFQS
ALRLDPTCANARAYLSATLTRLGHMSPQRRRSPTPPTDGRTPQPASASRS
TAAGSGAALPAAASTVVLPVSKEKLYVKPPPQAGGGDYSFVNSEDSEGGS
QGTGGGKREKRRDRRKHTKHEKKKKRKKEKHASSGGGSSKRSGDKKKHSS
RKPRRAAAASHLARQQRQQQRQQQRQLRRSPKTTILCSRIQYLGGPSTVC
GDFKCVVA*
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mRNA from alignment at Contig_131:373547..375715+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13643 ID=mRNA_13643|Name=jgi.p|Trimin1|16982|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2169bp|location=Sequence derived from alignment at Contig_131:373547..375715+ (Tribonema minus UTEX_B_3156 )
GCTACAACGACGTGCTGCTCGCAGACAAGTCCTTCTACAACCCCTTTGCC
ACAGAGGCCATGGCGTCAGCATTCCGCGTGTGTCGGCCGCTGTCATTTGC
CGTGGACGTGGCAGCTGACGGAGCGGGCGCACGGGACTGGTTCTTTGAGG
ACTTGCGCGAGCGGCAGGACCGAACGTGGGCGGACACACGTGTGGCCAAG
GGGGTGAGTCACACACTTGAAGTTTCTTCCACATGGTCCACCAGCAGCAG
CCCCTTGACAGTTGCTGCTGCTTCATCGGGGCTGACAGCCTTGCGTTCGT
TGTCATCGATGCTCACGTTTGTCCACAGTCGCATTTGCATTTCGCGTGTA
CGCCAGGTTGGGTTGCCGTGCTCCTCCCCAGCCATGGCTTGCATTGTCGA
GTTGGATAGCCAAGCAAGGGCGTCAAAGCTGATGTAACATTATCGTGTGG
CTTGTCACGCGATGCTGATTGTCTGTGACACTGAGCCTTTTCGAGTTAAG
GAGGCTGAGAGCAGGTGCTGCGCCGGCTCAGCCATGTACGCTGCCCTCTG
CTCTGCGATGCATGTACCTGCCCGAACGCAAGGCGGAGCTGGCGAGATCA
GGCCAGCATGCGGCGGCCATCAAGTACTATGACCAGGTGCGTCATGCTCT
GCAGCAGCCTTCTGCAGTCGTGCAACCCATTGTCCTAGTGTTGCACACTT
GCTCCTGTCGTTTACATGCACTGCATCGGCGTTTGGTCCGCGCTTGCTCT
GTCGCGCCCCCGTGCTGCGGCTGCCCTGAACGGATCTGGTGCGGACCAGC
GCGCTCACGCGATGGCGGCGGACTCTGCAGTGGTGCACGCATTTTGAATT
TGTCGCTGCGCAGGCCCTCGGCATGTGCGCGGGACACGTGGACGCAGTGG
TGGCCAGAGGCGCGGCGCTGGCGAGCCTGGGGCAGCTGCGGCAGGCGGTG
GAGGCGTTCCAGAGCGCGCTGAGGCTGGACCCGACTTGCGCGAACGCCAG
GTGCGTAAGCTGCGGTGTTGTGCAGGATGCACAGCGGAGCAGATCACCAT
TGCTCTGCTCAATGACATCAAGGATGGCATTGCATGCATAGTCCAGACCG
CCGAAACGTGCACGTTTCATCTCACACACCAGGTCCTGGTCGCTGCTTCT
GATTGTGGTGATAGTTTGCTGTTGCTGATTGTTGCGATGACGTTGTCTGC
TCACAAAGATGCGGAACCATCGAAAGCCGCCGCCGCCTAGTTCAAGAAGT
TTTGCTGGACGTCCAGGGACAATCCGTGGGCGGGATGGCTGCTCACGCCC
GCGCGACAGTTTGTCAGCTGCTGCCAAACTGCCTCTTTCAGCCTGACACT
GCGCAGCCCTAGCAGGCGTCGCACCACAAACGTCCAGTCACGCTGTCTCC
TCACAGTGCCATCATACTGTCAGATGTGGTGCTGAGCTGCTGCCAATGCC
GTCGCCTGCGATCGCCAGGGCATATCTCAGCGCGACGCTGACACGCCTGG
GCCACATGTCTCCGCAACGGCGGCGATCTCCCACCCCCCCTACTGACGGC
CGGACACCTCAGCCAGCGAGCGCAAGCAGATCCACAGCAGCCGGCAGCGG
CGCAGCGCTACCCGCAGCGGCCAGCACGGTCGTGCTGCCCGTCTCCAAGG
AGAAGCTGTACGTCAAGCCGCCGCCGCAGGCGGGGGGCGGCGATTACAGC
TTCGTCAACTCGGAGGACAGCGAGGGGGGCTCGCAGGGAACGGGCGGGGG
GAAGCGCGAGAAGCGGCGCGACAGGCGGAAACACACCAAACACGAGAAGA
AGAAGAAGCGGAAAAAGGAAAAGCACGCCAGCAGCGGCGGCGGCAGCAGC
AAGCGCAGCGGCGACAAAAAGAAACACAGCAGCAGGAAGCGCGAGCGGCG
GCGAGCTGCTGGCAGCAGCGGCAGCAGTTCGGACTCGAGTGATGCCAGCG
TCGGCAGCGCGCCGCGCCGCGGCGGCGTCCCATCTGGCACGGCAGCAGCG
GCAGCAGCAGCGGCAGCAGCAGCGGCAGCTGCGGCGGAGTCCGAAGACGA
CGATCTTGTGCAGCCGCATCCAATACTTGGGCGGACCAAGCACAGTCTGT
GGGGATTTTAAATGCGTCGTCGCATAGCCTTGTAATCCACTGACATGGTG
AATGCACGTGTGTTTCGTG
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Coding sequence (CDS) from alignment at Contig_131:373547..375715+

>mRNA_13643 ID=mRNA_13643|Name=jgi.p|Trimin1|16982|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=927bp|location=Sequence derived from alignment at Contig_131:373547..375715+ (Tribonema minus UTEX_B_3156 )
ATGGCGTCAGCATTCCGCGTGTGTCGGCCGCTGTCATTTGCCGTGGACGT
GGCAGCTGACGGAGCGGGCGCACGGGACTGGTTCTTTGAGGACTTGCGCG
AGCGGCAGGACCGAACGTGGGCGGACACACGTGTGGCCAAGGGGGCGGAG
CTGGCGAGATCAGGCCAGCATGCGGCGGCCATCAAGTACTATGACCAGGC
CCTCGGCATGTGCGCGGGACACGTGGACGCAGTGGTGGCCAGAGGCGCGG
CGCTGGCGAGCCTGGGGCAGCTGCGGCAGGCGGTGGAGGCGTTCCAGAGC
GCGCTGAGGCTGGACCCGACTTGCGCGAACGCCAGGGCATATCTCAGCGC
GACGCTGACACGCCTGGGCCACATGTCTCCGCAACGGCGGCGATCTCCCA
CCCCCCCTACTGACGGCCGGACACCTCAGCCAGCGAGCGCAAGCAGATCC
ACAGCAGCCGGCAGCGGCGCAGCGCTACCCGCAGCGGCCAGCACGGTCGT
GCTGCCCGTCTCCAAGGAGAAGCTGTACGTCAAGCCGCCGCCGCAGGCGG
GGGGCGGCGATTACAGCTTCGTCAACTCGGAGGACAGCGAGGGGGGCTCG
CAGGGAACGGGCGGGGGGAAGCGCGAGAAGCGGCGCGACAGGCGGAAACA
CACCAAACACGAGAAGAAGAAGAAGCGGAAAAAGGAAAAGCACGCCAGCA
GCGGCGGCGGCAGCAGCAAGCGCAGCGGCGACAAAAAGAAACACAGCAGC
AGGAAGCCGCGCCGCGCCGCGGCGGCGTCCCATCTGGCACGGCAGCAGCG
GCAGCAGCAGCGGCAGCAGCAGCGGCAGCTGCGGCGGAGTCCGAAGACGA
CGATCTTGTGCAGCCGCATCCAATACTTGGGCGGACCAAGCACAGTCTGT
GGGGATTTTAAATGCGTCGTCGCATAG
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