mRNA_13638 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|152975 vs. uniprot
Match: A0A835ZF88_9STRA (FYVE-type domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF88_9STRA) HSP 1 Score: 160 bits (404), Expect = 3.290e-50 Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 1
Query: 1 SPKLYWMPDKICRVCYECGAPFTMFRRRHHCRVCGQVFCQNCSGYSVDGKDFGIAGSIRTCRMCYDQ 201
SPKLYWMPDKICRVCYECGAPFTMFRRRHHCRVCGQVFCQNCSGYSVDGKDFGIAGSIRTCRMCYDQ
Sbjct: 1 SPKLYWMPDKICRVCYECGAPFTMFRRRHHCRVCGQVFCQNCSGYSVDGKDFGIAGSIRTCRMCYDQ 67
BLAST of jgi.p|Trimin1|152975 vs. uniprot
Match: A0A7S2GIE7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GIE7_9STRA) HSP 1 Score: 112 bits (281), Expect = 5.120e-30 Identity = 41/63 (65.08%), Postives = 52/63 (82.54%), Query Frame = 1
Query: 13 YWMPDKICRVCYECGAPFTMFRRRHHCRVCGQVFCQNCSGYSVDGKDFGIAGSIRTCRMCYDQ 201
YWMPD++C+VCY+C PF M RRRHHCR+CGQVFC +CS Y V+GK GI G++R C+MC+DQ
Sbjct: 31 YWMPDRLCKVCYDCELPFNMLRRRHHCRMCGQVFCHSCSSYFVEGKAAGIPGTVRACKMCHDQ 93
BLAST of jgi.p|Trimin1|152975 vs. uniprot
Match: A0A6H5K2Y0_9PHAE (FYVE-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2Y0_9PHAE) HSP 1 Score: 109 bits (273), Expect = 5.130e-28 Identity = 41/67 (61.19%), Postives = 51/67 (76.12%), Query Frame = 1
Query: 1 SPKLYWMPDKICRVCYECGAPFTMFRRRHHCRVCGQVFCQNCSGYSVDGKDFGIAGSIRTCRMCYDQ 201
+PK++WMPD++CRVCY C +PFTMFRRRHHCRVCGQ+FC CS VD + GI S+R C C +Q
Sbjct: 92 NPKMHWMPDRMCRVCYGCNSPFTMFRRRHHCRVCGQIFCHTCSSNHVDARALGINASVRMCNPCAEQ 158
BLAST of jgi.p|Trimin1|152975 vs. uniprot
Match: A0A7S4DP41_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DP41_9EUKA) HSP 1 Score: 108 bits (270), Expect = 9.470e-28 Identity = 39/65 (60.00%), Postives = 51/65 (78.46%), Query Frame = 1
Query: 7 KLYWMPDKICRVCYECGAPFTMFRRRHHCRVCGQVFCQNCSGYSVDGKDFGIAGSIRTCRMCYDQ 201
K +WMPD+ C+VCY+C PFT+FRRRHHCR+CGQVFC +CS + VDG + I G++R C C+DQ
Sbjct: 135 KKHWMPDRTCKVCYDCEMPFTLFRRRHHCRICGQVFCNSCSSHMVDGALYNIPGNVRVCNYCFDQ 199
BLAST of jgi.p|Trimin1|152975 vs. uniprot
Match: A0A1E7FV97_9STRA (FYVE/PHD zinc finger protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FV97_9STRA) HSP 1 Score: 102 bits (254), Expect = 2.220e-27 Identity = 39/62 (62.90%), Postives = 47/62 (75.81%), Query Frame = 1
Query: 16 WMPDKICRVCYECGAPFTMFRRRHHCRVCGQVFCQNCSGYSVDGKDFGIAGSIRTCRMCYDQ 201
WMPD++C+ CY C APFT+FRRRHHCR+CGQVFC CSGY V I +RTC+MC+DQ
Sbjct: 1 WMPDRLCKTCYSCDAPFTVFRRRHHCRICGQVFCNTCSGYFVPASSNNII--LRTCKMCFDQ 60
BLAST of jgi.p|Trimin1|152975 vs. uniprot
Match: A0A482SVF7_9ARCH (FYVE-type domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SVF7_9ARCH) HSP 1 Score: 107 bits (266), Expect = 1.220e-26 Identity = 42/65 (64.62%), Postives = 48/65 (73.85%), Query Frame = 1
Query: 7 KLYWMPDKICRVCYECGAPFTMFRRRHHCRVCGQVFCQNCSGYSVDGKDFGIAGSIRTCRMCYDQ 201
K +WMPDK C+VCY C FTMFRRRHHCR+CGQVFC NCS ++G + GSIR CR CYDQ
Sbjct: 28 KEFWMPDKYCKVCYGCEESFTMFRRRHHCRLCGQVFCNNCSNNFIEGSVLNMTGSIRVCRPCYDQ 92
BLAST of jgi.p|Trimin1|152975 vs. uniprot
Match: D7G3Z3_ECTSI (1-phosphatidylinositol-3-phosphate 5-kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Z3_ECTSI) HSP 1 Score: 109 bits (273), Expect = 2.150e-26 Identity = 41/67 (61.19%), Postives = 51/67 (76.12%), Query Frame = 1
Query: 1 SPKLYWMPDKICRVCYECGAPFTMFRRRHHCRVCGQVFCQNCSGYSVDGKDFGIAGSIRTCRMCYDQ 201
+PK++WMPD++CRVCY C +PFTMFRRRHHCRVCGQ+FC CS VD + GI S+R C C +Q
Sbjct: 158 NPKMHWMPDRMCRVCYGCNSPFTMFRRRHHCRVCGQIFCHTCSSNHVDARALGINASVRMCNPCAEQ 224
BLAST of jgi.p|Trimin1|152975 vs. uniprot
Match: A0A7S3NNB9_9STRA (1-phosphatidylinositol-3-phosphate 5-kinase n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NNB9_9STRA) HSP 1 Score: 107 bits (268), Expect = 1.010e-25 Identity = 38/63 (60.32%), Postives = 51/63 (80.95%), Query Frame = 1
Query: 13 YWMPDKICRVCYECGAPFTMFRRRHHCRVCGQVFCQNCSGYSVDGKDFGIAGSIRTCRMCYDQ 201
YWMPD++CR+CYEC PF +FRR+HHCR CGQ+FC +CS Y VDG+ F + G +R CR+C++Q
Sbjct: 173 YWMPDRLCRMCYECELPFNVFRRKHHCRFCGQIFCHSCSSYFVDGRLFLLIGMVRACRLCHNQ 235
BLAST of jgi.p|Trimin1|152975 vs. uniprot
Match: A0A2P4XC16_9STRA (FYVE-type domain-containing protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XC16_9STRA) HSP 1 Score: 100 bits (248), Expect = 2.710e-24 Identity = 34/61 (55.74%), Postives = 45/61 (73.77%), Query Frame = 1
Query: 13 YWMPDKICRVCYECGAPFTMFRRRHHCRVCGQVFCQNCSGYSVDGKDFGIAGSIRTCRMCY 195
YWMPD +C+VCY+C A F++FRRRHHCR+CGQ+FC CS +DG G G +R C+ C+
Sbjct: 7 YWMPDHLCKVCYDCSAAFSLFRRRHHCRLCGQIFCHECSNQFIDGTPHGFPGVVRVCKFCF 67
BLAST of jgi.p|Trimin1|152975 vs. uniprot
Match: A0A8J2X5N4_9STRA (1-phosphatidylinositol-3-phosphate 5-kinase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X5N4_9STRA) HSP 1 Score: 102 bits (254), Expect = 7.910e-24 Identity = 37/61 (60.66%), Postives = 45/61 (73.77%), Query Frame = 1
Query: 13 YWMPDKICRVCYECGAPFTMFRRRHHCRVCGQVFCQNCSGYSVDGKDFGIAGSIRTCRMCY 195
YWMPD++CR CYEC PF MFRRRHHCR+CGQVFC CS Y +DG+ + G +R C C+
Sbjct: 74 YWMPDRLCRTCYECEMPFNMFRRRHHCRLCGQVFCHKCSSYLIDGRLVLLTGMVRVCTTCH 134 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|152975 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_13638 ID=mRNA_13638|Name=jgi.p|Trimin1|152975|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=201bp|location=Sequence derived from alignment at Contig_131:307026..307539+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. TCGCCCAAGCTGTACTGGATGCCCGACAAGATCTGCAGGGTGTGCTACGAback to top protein sequence of jgi.p|Trimin1|152975 >Trimin1|152975|gw1.131.92.1 ID=Trimin1|152975|gw1.131.92.1|Name=jgi.p|Trimin1|152975|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=67bp SPKLYWMPDKICRVCYECGAPFTMFRRRHHCRVCGQVFCQNCSGYSVDGKback to top mRNA from alignment at Contig_131:307026..307539+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_13638 ID=mRNA_13638|Name=jgi.p|Trimin1|152975|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=514bp|location=Sequence derived from alignment at Contig_131:307026..307539+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_131:307026..307539+ >mRNA_13638 ID=mRNA_13638|Name=jgi.p|Trimin1|152975|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=201bp|location=Sequence derived from alignment at Contig_131:307026..307539+ (Tribonema minus UTEX_B_3156 )back to top |