mRNA_13638 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|152975
Unique NamemRNA_13638
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|152975 vs. uniprot
Match: A0A835ZF88_9STRA (FYVE-type domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF88_9STRA)

HSP 1 Score: 160 bits (404), Expect = 3.290e-50
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 1
Query:    1 SPKLYWMPDKICRVCYECGAPFTMFRRRHHCRVCGQVFCQNCSGYSVDGKDFGIAGSIRTCRMCYDQ 201
            SPKLYWMPDKICRVCYECGAPFTMFRRRHHCRVCGQVFCQNCSGYSVDGKDFGIAGSIRTCRMCYDQ
Sbjct:    1 SPKLYWMPDKICRVCYECGAPFTMFRRRHHCRVCGQVFCQNCSGYSVDGKDFGIAGSIRTCRMCYDQ 67          
BLAST of jgi.p|Trimin1|152975 vs. uniprot
Match: A0A7S2GIE7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GIE7_9STRA)

HSP 1 Score: 112 bits (281), Expect = 5.120e-30
Identity = 41/63 (65.08%), Postives = 52/63 (82.54%), Query Frame = 1
Query:   13 YWMPDKICRVCYECGAPFTMFRRRHHCRVCGQVFCQNCSGYSVDGKDFGIAGSIRTCRMCYDQ 201
            YWMPD++C+VCY+C  PF M RRRHHCR+CGQVFC +CS Y V+GK  GI G++R C+MC+DQ
Sbjct:   31 YWMPDRLCKVCYDCELPFNMLRRRHHCRMCGQVFCHSCSSYFVEGKAAGIPGTVRACKMCHDQ 93          
BLAST of jgi.p|Trimin1|152975 vs. uniprot
Match: A0A6H5K2Y0_9PHAE (FYVE-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2Y0_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 5.130e-28
Identity = 41/67 (61.19%), Postives = 51/67 (76.12%), Query Frame = 1
Query:    1 SPKLYWMPDKICRVCYECGAPFTMFRRRHHCRVCGQVFCQNCSGYSVDGKDFGIAGSIRTCRMCYDQ 201
            +PK++WMPD++CRVCY C +PFTMFRRRHHCRVCGQ+FC  CS   VD +  GI  S+R C  C +Q
Sbjct:   92 NPKMHWMPDRMCRVCYGCNSPFTMFRRRHHCRVCGQIFCHTCSSNHVDARALGINASVRMCNPCAEQ 158          
BLAST of jgi.p|Trimin1|152975 vs. uniprot
Match: A0A7S4DP41_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DP41_9EUKA)

HSP 1 Score: 108 bits (270), Expect = 9.470e-28
Identity = 39/65 (60.00%), Postives = 51/65 (78.46%), Query Frame = 1
Query:    7 KLYWMPDKICRVCYECGAPFTMFRRRHHCRVCGQVFCQNCSGYSVDGKDFGIAGSIRTCRMCYDQ 201
            K +WMPD+ C+VCY+C  PFT+FRRRHHCR+CGQVFC +CS + VDG  + I G++R C  C+DQ
Sbjct:  135 KKHWMPDRTCKVCYDCEMPFTLFRRRHHCRICGQVFCNSCSSHMVDGALYNIPGNVRVCNYCFDQ 199          
BLAST of jgi.p|Trimin1|152975 vs. uniprot
Match: A0A1E7FV97_9STRA (FYVE/PHD zinc finger protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FV97_9STRA)

HSP 1 Score: 102 bits (254), Expect = 2.220e-27
Identity = 39/62 (62.90%), Postives = 47/62 (75.81%), Query Frame = 1
Query:   16 WMPDKICRVCYECGAPFTMFRRRHHCRVCGQVFCQNCSGYSVDGKDFGIAGSIRTCRMCYDQ 201
            WMPD++C+ CY C APFT+FRRRHHCR+CGQVFC  CSGY V      I   +RTC+MC+DQ
Sbjct:    1 WMPDRLCKTCYSCDAPFTVFRRRHHCRICGQVFCNTCSGYFVPASSNNII--LRTCKMCFDQ 60          
BLAST of jgi.p|Trimin1|152975 vs. uniprot
Match: A0A482SVF7_9ARCH (FYVE-type domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SVF7_9ARCH)

HSP 1 Score: 107 bits (266), Expect = 1.220e-26
Identity = 42/65 (64.62%), Postives = 48/65 (73.85%), Query Frame = 1
Query:    7 KLYWMPDKICRVCYECGAPFTMFRRRHHCRVCGQVFCQNCSGYSVDGKDFGIAGSIRTCRMCYDQ 201
            K +WMPDK C+VCY C   FTMFRRRHHCR+CGQVFC NCS   ++G    + GSIR CR CYDQ
Sbjct:   28 KEFWMPDKYCKVCYGCEESFTMFRRRHHCRLCGQVFCNNCSNNFIEGSVLNMTGSIRVCRPCYDQ 92          
BLAST of jgi.p|Trimin1|152975 vs. uniprot
Match: D7G3Z3_ECTSI (1-phosphatidylinositol-3-phosphate 5-kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Z3_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 2.150e-26
Identity = 41/67 (61.19%), Postives = 51/67 (76.12%), Query Frame = 1
Query:    1 SPKLYWMPDKICRVCYECGAPFTMFRRRHHCRVCGQVFCQNCSGYSVDGKDFGIAGSIRTCRMCYDQ 201
            +PK++WMPD++CRVCY C +PFTMFRRRHHCRVCGQ+FC  CS   VD +  GI  S+R C  C +Q
Sbjct:  158 NPKMHWMPDRMCRVCYGCNSPFTMFRRRHHCRVCGQIFCHTCSSNHVDARALGINASVRMCNPCAEQ 224          
BLAST of jgi.p|Trimin1|152975 vs. uniprot
Match: A0A7S3NNB9_9STRA (1-phosphatidylinositol-3-phosphate 5-kinase n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NNB9_9STRA)

HSP 1 Score: 107 bits (268), Expect = 1.010e-25
Identity = 38/63 (60.32%), Postives = 51/63 (80.95%), Query Frame = 1
Query:   13 YWMPDKICRVCYECGAPFTMFRRRHHCRVCGQVFCQNCSGYSVDGKDFGIAGSIRTCRMCYDQ 201
            YWMPD++CR+CYEC  PF +FRR+HHCR CGQ+FC +CS Y VDG+ F + G +R CR+C++Q
Sbjct:  173 YWMPDRLCRMCYECELPFNVFRRKHHCRFCGQIFCHSCSSYFVDGRLFLLIGMVRACRLCHNQ 235          
BLAST of jgi.p|Trimin1|152975 vs. uniprot
Match: A0A2P4XC16_9STRA (FYVE-type domain-containing protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XC16_9STRA)

HSP 1 Score: 100 bits (248), Expect = 2.710e-24
Identity = 34/61 (55.74%), Postives = 45/61 (73.77%), Query Frame = 1
Query:   13 YWMPDKICRVCYECGAPFTMFRRRHHCRVCGQVFCQNCSGYSVDGKDFGIAGSIRTCRMCY 195
            YWMPD +C+VCY+C A F++FRRRHHCR+CGQ+FC  CS   +DG   G  G +R C+ C+
Sbjct:    7 YWMPDHLCKVCYDCSAAFSLFRRRHHCRLCGQIFCHECSNQFIDGTPHGFPGVVRVCKFCF 67          
BLAST of jgi.p|Trimin1|152975 vs. uniprot
Match: A0A8J2X5N4_9STRA (1-phosphatidylinositol-3-phosphate 5-kinase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X5N4_9STRA)

HSP 1 Score: 102 bits (254), Expect = 7.910e-24
Identity = 37/61 (60.66%), Postives = 45/61 (73.77%), Query Frame = 1
Query:   13 YWMPDKICRVCYECGAPFTMFRRRHHCRVCGQVFCQNCSGYSVDGKDFGIAGSIRTCRMCY 195
            YWMPD++CR CYEC  PF MFRRRHHCR+CGQVFC  CS Y +DG+   + G +R C  C+
Sbjct:   74 YWMPDRLCRTCYECEMPFNMFRRRHHCRLCGQVFCHKCSSYLIDGRLVLLTGMVRVCTTCH 134          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|152975 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZF88_9STRA3.290e-50100.00FYVE-type domain-containing protein (Fragment) n=1... [more]
A0A7S2GIE7_9STRA5.120e-3065.08Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A6H5K2Y0_9PHAE5.130e-2861.19FYVE-type domain-containing protein (Fragment) n=1... [more]
A0A7S4DP41_9EUKA9.470e-2860.00Hypothetical protein (Fragment) n=1 Tax=Lotharella... [more]
A0A1E7FV97_9STRA2.220e-2762.90FYVE/PHD zinc finger protein (Fragment) n=1 Tax=Fr... [more]
A0A482SVF7_9ARCH1.220e-2664.62FYVE-type domain-containing protein n=1 Tax=archae... [more]
D7G3Z3_ECTSI2.150e-2661.191-phosphatidylinositol-3-phosphate 5-kinase n=1 Ta... [more]
A0A7S3NNB9_9STRA1.010e-2560.321-phosphatidylinositol-3-phosphate 5-kinase n=1 Ta... [more]
A0A2P4XC16_9STRA2.710e-2455.74FYVE-type domain-containing protein (Fragment) n=1... [more]
A0A8J2X5N4_9STRA7.910e-2460.661-phosphatidylinositol-3-phosphate 5-kinase n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_131contigContig_131:307026..307539 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|152975|gw1.131.92.1
BRITEko00000,ko00001,ko01000,ko04131
KEGG rclassRC00002,RC00078
KEGG ReactionR05802,R10951
KEGG Pathwayko00562,ko04070,ko04145,ko04810,map00562,map04070,map04145,map04810
KEGG koko:K00921
EC2.7.1.150
Description1-phosphatidylinositol-3-phosphate 5-kinase activity
COG categoryT
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5253@1|root,KOG0230@2759|Eukaryota
Evalue3.52e-27
Seed ortholog2880.D7G3Z3
Hectar predicted targeting categoryother localisation
TranscriptId153297
TrackFilteredModels1
ProteinId152975
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|152975gene_13638Tribonema minus UTEX_B_3156 geneContig_131 307026..307539 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13638_1exon_13638_1Tribonema minus UTEX_B_3156 exonContig_131 307026..307175 +
exon_13638_2exon_13638_2Tribonema minus UTEX_B_3156 exonContig_131 307489..307539 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13638CDS_13638Tribonema minus UTEX_B_3156 CDSContig_131 307026..307175 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|152975Trimin1|152975|gw1.131.92.1Tribonema minus UTEX_B_3156 polypeptideContig_131 307026..307539 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13638 ID=mRNA_13638|Name=jgi.p|Trimin1|152975|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=201bp|location=Sequence derived from alignment at Contig_131:307026..307539+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TCGCCCAAGCTGTACTGGATGCCCGACAAGATCTGCAGGGTGTGCTACGA
GTGCGGCGCGCCGTTTACGATGTTCCGGCGGCGCCACCACTGCCGCGTGT
GCGGCCAGGTGTTCTGCCAGAACTGCAGCGGCTACAGCGTCGACGGCAAG
GACTTCGGCATCGCCGGCTCCATACGCACGTGCCGCATGTGCTACGACCA
G
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protein sequence of jgi.p|Trimin1|152975

>Trimin1|152975|gw1.131.92.1 ID=Trimin1|152975|gw1.131.92.1|Name=jgi.p|Trimin1|152975|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=67bp
SPKLYWMPDKICRVCYECGAPFTMFRRRHHCRVCGQVFCQNCSGYSVDGK
DFGIAGSIRTCRMCYDQ
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mRNA from alignment at Contig_131:307026..307539+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13638 ID=mRNA_13638|Name=jgi.p|Trimin1|152975|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=514bp|location=Sequence derived from alignment at Contig_131:307026..307539+ (Tribonema minus UTEX_B_3156 )
TCGCCCAAGCTGTACTGGATGCCCGACAAGATCTGCAGGGTGTGCTACGA GTGCGGCGCGCCGTTTACGATGTTCCGGCGGCGCCACCACTGCCGCGTGT GCGGCCAGGTGTTCTGCCAGAACTGCAGCGGCTACAGCGTCGACGGCAAG GTGAGGGGGGGTGGGGACTGCGAACGTGTGAGTTCTGCGTCGCGCGTGCT TGGGCTTTGTGTTACAGCTGCAGCATTGACTTCGGCGCTGCGTAGTCTGT GCGTCTGGGCAGCCTTTGTGTTCGAATCTGAGTGCGCACAAATTTAGTTG CGTGTGCCGTGCATTGAAAATGCTGTGTGCTCGAATGTGTACACTTTTAA TTGCGTGCGCGGCGCATTGAAAATGCTGTTGTTGCTGTGCTGCCACAACC CCAATTATTCCCATGAGTCACGCAGTACGCTGCATGCCACCCTCGCCCCG TGCCTCGCCGCAGGACTTCGGCATCGCCGGCTCCATACGCACGTGCCGCA TGTGCTACGACCAG
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Coding sequence (CDS) from alignment at Contig_131:307026..307539+

>mRNA_13638 ID=mRNA_13638|Name=jgi.p|Trimin1|152975|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=201bp|location=Sequence derived from alignment at Contig_131:307026..307539+ (Tribonema minus UTEX_B_3156 )
TCGCCCAAGCTGTACTGGATGCCCGACAAGATCTGCAGGGTGTGCTACGA
GTGCGGCGCGCCGTTTACGATGTTCCGGCGGCGCCACCACTGCCGCGTGT
GCGGCCAGGTGTTCTGCCAGAACTGCAGCGGCTACAGCGTCGACGGCAAG
GACTTCGGCATCGCCGGCTCCATACGCACGTGCCGCATGTGCTACGACCA
G
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