mRNA_13636 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|175870
Unique NamemRNA_13636
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|175870 vs. uniprot
Match: A0A835ZJL6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJL6_9STRA)

HSP 1 Score: 762 bits (1968), Expect = 5.470e-279
Identity = 361/361 (100.00%), Postives = 361/361 (100.00%), Query Frame = 1 
Query:    1 MIGWRWRPPWSGGNTLAAAATAAAALSSLACYHVATAQHADVDGGIIKPSAAARTLPAAATIRATSLLASAAPDPAWIEAQCPNAFKYHTPECSNGGTLYVYNGTESHKESSCAHCDCPEGWGGLSCNLCTDVGSCPPQQLSDGTFRDASACTSSQLLPTPEEAQGGGKLVSCTCGGGEDDWSALLCAQQPDTRLELTVRGFGNATHPATIDVIETAAIRRKADEAWPGQYDYWFPAVFNGSLTGCEVSVGKCLDIPGTTLAQRDCTVFACAATRTQCPPPGYDVCDGFPDCRAPPGAPGAYKTHKCDAIPQSGKAFTVTCEVAPTADGRFVCYYQQPGGFAPLSVTCAAGGCVYDGGAPI 1083
            MIGWRWRPPWSGGNTLAAAATAAAALSSLACYHVATAQHADVDGGIIKPSAAARTLPAAATIRATSLLASAAPDPAWIEAQCPNAFKYHTPECSNGGTLYVYNGTESHKESSCAHCDCPEGWGGLSCNLCTDVGSCPPQQLSDGTFRDASACTSSQLLPTPEEAQGGGKLVSCTCGGGEDDWSALLCAQQPDTRLELTVRGFGNATHPATIDVIETAAIRRKADEAWPGQYDYWFPAVFNGSLTGCEVSVGKCLDIPGTTLAQRDCTVFACAATRTQCPPPGYDVCDGFPDCRAPPGAPGAYKTHKCDAIPQSGKAFTVTCEVAPTADGRFVCYYQQPGGFAPLSVTCAAGGCVYDGGAPI
Sbjct:    1 MIGWRWRPPWSGGNTLAAAATAAAALSSLACYHVATAQHADVDGGIIKPSAAARTLPAAATIRATSLLASAAPDPAWIEAQCPNAFKYHTPECSNGGTLYVYNGTESHKESSCAHCDCPEGWGGLSCNLCTDVGSCPPQQLSDGTFRDASACTSSQLLPTPEEAQGGGKLVSCTCGGGEDDWSALLCAQQPDTRLELTVRGFGNATHPATIDVIETAAIRRKADEAWPGQYDYWFPAVFNGSLTGCEVSVGKCLDIPGTTLAQRDCTVFACAATRTQCPPPGYDVCDGFPDCRAPPGAPGAYKTHKCDAIPQSGKAFTVTCEVAPTADGRFVCYYQQPGGFAPLSVTCAAGGCVYDGGAPI 361
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BLAST of jgi.p|Trimin1|175870 vs. uniprot
Match: A0A6H5KKD9_9PHAE (ABC protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKD9_9PHAE)

HSP 1 Score: 281 bits (720), Expect = 1.130e-81
Identity = 133/281 (47.33%), Postives = 173/281 (61.57%), Query Frame = 1 
Query:  244 CPNAFKYHTPECSNGGTLYVYNGTESHKESSCAHCDCPEGWGGLSCNLCTDVGSCPPQQLSDGTFRDASACTSSQLLPTPEEAQG-GGKLVSCTCGGGEDDWSALLCAQQPDTRLELTVRGFGNATHPATIDVIETAAIRRKADEAWPGQYDYWFPAVFNGSLTGCEVSVGKCLDIPGTTLAQRDCTVFACAATRTQCPPPGYDVCDGFPDCRAPPGAPGAYKTHKCDAIPQSGKAFTVTCEVAPTADGRFVCYYQQPGGFAPLSVTCAAGGCVYDGGAPI 1083
            C NA+ Y  P C    TLY   GT +H + SCAHC C +GW G+ C  C DV  CP   + DG    A+ C+++ LL T EEA+   GK+ SC+CGGGED W+  LC QQPDT ++  V G G    PA + + E A I  + +E WPGQY Y +P +F+GS   C+V   KC  I GT + +RDC  F C  T   CPP  Y +CDGFP C +P G    Y+TH C A+P+ GK+ T+ C+     +G +VCYYQQPGGFAPLS+TC+ G C+Y GGAP+
Sbjct:   42 CTNAYDYGDPTCFGNSTLYW--GTGNHTDLSCAHCVCEDGWAGVDCGRCLDVSVCPSSTV-DGQVAAATNCSANTLLLTEEEARSEAGKIFSCSCGGGEDGWTDFLCDQQPDTWIQWAVTGGGTEEDPAFVVLEEFAGIHARTEEKWPGQYKYHYPKIFDGSAGPCKVYRDKCFPIGGTDVGERDCVNFECGDTEGLCPPEEYPMCDGFPHCVSPNGE--KYETHPCTAVPEGGKSITIACQ-EEKVNGSYVCYYQQPGGFAPLSMTCSVGSCLYQGGAPV 316
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BLAST of jgi.p|Trimin1|175870 vs. uniprot
Match: A0A6H5KT00_9PHAE (ABC protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT00_9PHAE)

HSP 1 Score: 199 bits (506), Expect = 3.860e-53
Identity = 90/210 (42.86%), Postives = 132/210 (62.86%), Query Frame = 1 
Query:  445 ASACTSSQLLPTPEEAQG-GGKLVSCTCGGGEDDWSALLCAQQPDTRLELTVRGFGNATHPATIDVIETAAIRRKADEAWPGQYDYWFPAVFNGSLTGCEVSVGKCLDIPGTTLAQRDCTVFACAATRTQCPPPGYDVCDGFPDCRAPPGAPGAYKTHKCDAIPQSGKAFTVTCEVAPTADGRFVCYYQQPGGFAPLSVTCAAGGCVYDG 1071
            A+ C+SS L+PT EE+Q   GK+ SC+CGGG D ++  LC  QP+T +E T++G G A   A +   E A       EAWPG++D+++P ++ G+ T C V+ G CL +  T + +++C  + C  T+  CPP GY VCDGFP+C +  G    Y+ H C   P S KA T+ C+     +G ++C+YQQPG FAPLS+TC+ G C+Y+G
Sbjct:   28 ATNCSSSSLIPTDEESQQENGKVFSCSCGGGGDAFTDALCGLQPETWVEFTIKGSGTAESLALMTFTEFAGTETMIREAWPGEHDFYYPVIYEGAATDCTVTRGLCLPVEDTDIGEQECIRYDCGDTQGSCPPEGYPVCDGFPECVSDSG--DEYQVHTCTGAPASDKALTIACQ-DQQVNGTYICWYQQPGEFAPLSMTCSVGSCLYEG 234
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BLAST of jgi.p|Trimin1|175870 vs. uniprot
Match: D8LNV5_ECTSI (ATP-binding cassette superfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNV5_ECTSI)

HSP 1 Score: 146 bits (368), Expect = 7.680e-35
Identity = 63/144 (43.75%), Postives = 89/144 (61.81%), Query Frame = 1 
Query:  643 ETAAIRRKADEAWPGQYDYWFPAVFNGSLTGCEVSVGKCLDIPGTTLAQRDCTVFACAATRTQCPPPGYDVCDGFPDCRAPPGAPGAYKTHKCDAIPQSGKAFTVTCEVAPTADGRFVCYYQQPGGFAPLSVTCAAGGCVYDGG 1074
            E A       EAWPG++D+++P ++ G+ T C VS G CL +  T + ++ C  + C  T+  CPP GY VCDGFP+C +  G    Y+ H C   P S KA T+ C+     DG ++C+YQQPG FAPLS+TC+ G C+Y+GG
Sbjct:  198 EFAGTETMIREAWPGEHDFYYPVIYEGAATDCTVSGGPCLPVADTDIGEQTCIRYDCEDTQGSCPPEGYPVCDGFPECVSDSG--DEYQVHTCTGAPASDKALTIACQ-DQQVDGTYICWYQQPGEFAPLSLTCSVGSCLYEGG 338
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BLAST of jgi.p|Trimin1|175870 vs. uniprot
Match: A0A835Z7P4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7P4_9STRA)

HSP 1 Score: 113 bits (282), Expect = 2.920e-27
Identity = 52/61 (85.25%), Postives = 54/61 (88.52%), Query Frame = 1 
Query:  901 AYKTHKCDAIPQSGKAFTVTCEVAPTADGRFVCYYQQPGGFAPLSVTCAAGGCVYDGGAPI 1083
            AYKTHKCDAIPQ GKAF V CE+ PTADGR VCYYQQPG FAPLS+TCAAGGCVYDGGA I
Sbjct:   16 AYKTHKCDAIPQYGKAFMVMCELEPTADGRVVCYYQQPGRFAPLSLTCAAGGCVYDGGALI 76
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|175870 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A835ZJL6_9STRA5.470e-279100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A6H5KKD9_9PHAE1.130e-8147.33ABC protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
A0A6H5KT00_9PHAE3.860e-5342.86ABC protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP... [more]
D8LNV5_ECTSI7.680e-3543.75ATP-binding cassette superfamily n=1 Tax=Ectocarpu... [more]
A0A835Z7P4_9STRA2.920e-2785.25Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_131contigContig_131:285068..286150 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|175870|e_gw1.131.80.1
KEGG TC3.A.1.204
BRITEko00000,ko00001,ko02000,ko04090,ko04147
KEGG Pathwayko01523,ko02010,ko04976,map01523,map02010,map04976
KEGG koko:K05681
DescriptionATPase activity, coupled to transmembrane movement of substances
COG categoryV
Max annot lvl2759|Eukaryota
EggNOG OGsCOG1131@1|root,KOG0061@2759|Eukaryota
Evalue1.83e-82
Seed ortholog2880.D8LNU0
Hectar predicted targeting categorysignal peptide
TranscriptId176192
TrackFilteredModels1
ProteinId175870
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|175870gene_13636Tribonema minus UTEX_B_3156 geneContig_131 285068..286150 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13636_1exon_13636_1Tribonema minus UTEX_B_3156 exonContig_131 285068..286150 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13636CDS_13636Tribonema minus UTEX_B_3156 CDSContig_131 285068..286150 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|175870Trimin1|175870|e_gw1.131.80.1Tribonema minus UTEX_B_3156 polypeptideContig_131 285068..286150 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13636 ID=mRNA_13636|Name=jgi.p|Trimin1|175870|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1083bp|location=Sequence derived from alignment at Contig_131:285068..286150- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGATCGGGTGGAGATGGCGGCCGCCGTGGAGCGGTGGCAACACATTGGC
TGCTGCAGCAACTGCTGCTGCTGCTCTCTCCAGTCTGGCCTGTTACCACG
TTGCGACAGCGCAACATGCAGACGTTGACGGAGGAATCATCAAGCCGAGC
GCTGCAGCACGGACATTGCCTGCAGCAGCAACTATCAGAGCTACCTCACT
GCTTGCATCGGCAGCACCAGATCCAGCCTGGATCGAAGCTCAATGCCCGA
ATGCCTTCAAGTATCACACACCCGAGTGCTCCAACGGAGGCACGCTGTAC
GTGTACAACGGCACGGAGTCTCACAAGGAGAGCAGTTGTGCGCACTGCGA
CTGCCCCGAGGGCTGGGGCGGCCTGAGCTGCAATCTCTGCACCGACGTCG
GCTCCTGCCCGCCGCAGCAGCTGAGCGACGGCACGTTCAGGGATGCCTCC
GCATGCACCAGCTCCCAGCTGCTGCCGACGCCGGAGGAGGCGCAGGGGGG
GGGCAAGCTCGTGTCGTGCACGTGCGGGGGCGGCGAGGACGACTGGTCCG
CGTTGCTGTGCGCGCAGCAGCCGGACACGCGCCTGGAGCTGACGGTGCGC
GGCTTCGGCAACGCCACGCACCCCGCCACCATCGATGTCATCGAGACCGC
GGCGATTCGGCGCAAGGCGGACGAGGCGTGGCCCGGCCAGTACGACTACT
GGTTTCCCGCCGTGTTCAACGGGTCGCTGACGGGCTGCGAGGTGAGCGTC
GGCAAGTGCCTCGACATCCCCGGCACGACGCTCGCGCAGCGCGACTGCAC
CGTCTTCGCGTGCGCCGCGACGCGCACGCAGTGCCCGCCGCCCGGCTACG
ATGTCTGCGACGGCTTCCCGGACTGCCGTGCGCCGCCGGGCGCGCCGGGC
GCGTACAAGACCCACAAGTGCGACGCGATCCCGCAGTCCGGCAAGGCCTT
CACGGTGACGTGCGAAGTCGCGCCGACCGCCGACGGCCGCTTCGTCTGCT
ACTACCAGCAGCCGGGCGGGTTCGCGCCGCTCTCTGTGACGTGCGCAGCC
GGCGGCTGTGTGTACGACGGCGGCGCGCCGATA
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protein sequence of jgi.p|Trimin1|175870

>Trimin1|175870|e_gw1.131.80.1 ID=Trimin1|175870|e_gw1.131.80.1|Name=jgi.p|Trimin1|175870|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=361bp
MIGWRWRPPWSGGNTLAAAATAAAALSSLACYHVATAQHADVDGGIIKPS
AAARTLPAAATIRATSLLASAAPDPAWIEAQCPNAFKYHTPECSNGGTLY
VYNGTESHKESSCAHCDCPEGWGGLSCNLCTDVGSCPPQQLSDGTFRDAS
ACTSSQLLPTPEEAQGGGKLVSCTCGGGEDDWSALLCAQQPDTRLELTVR
GFGNATHPATIDVIETAAIRRKADEAWPGQYDYWFPAVFNGSLTGCEVSV
GKCLDIPGTTLAQRDCTVFACAATRTQCPPPGYDVCDGFPDCRAPPGAPG
AYKTHKCDAIPQSGKAFTVTCEVAPTADGRFVCYYQQPGGFAPLSVTCAA
GGCVYDGGAPI
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mRNA from alignment at Contig_131:285068..286150-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13636 ID=mRNA_13636|Name=jgi.p|Trimin1|175870|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1083bp|location=Sequence derived from alignment at Contig_131:285068..286150- (Tribonema minus UTEX_B_3156 )
ATGATCGGGTGGAGATGGCGGCCGCCGTGGAGCGGTGGCAACACATTGGC
TGCTGCAGCAACTGCTGCTGCTGCTCTCTCCAGTCTGGCCTGTTACCACG
TTGCGACAGCGCAACATGCAGACGTTGACGGAGGAATCATCAAGCCGAGC
GCTGCAGCACGGACATTGCCTGCAGCAGCAACTATCAGAGCTACCTCACT
GCTTGCATCGGCAGCACCAGATCCAGCCTGGATCGAAGCTCAATGCCCGA
ATGCCTTCAAGTATCACACACCCGAGTGCTCCAACGGAGGCACGCTGTAC
GTGTACAACGGCACGGAGTCTCACAAGGAGAGCAGTTGTGCGCACTGCGA
CTGCCCCGAGGGCTGGGGCGGCCTGAGCTGCAATCTCTGCACCGACGTCG
GCTCCTGCCCGCCGCAGCAGCTGAGCGACGGCACGTTCAGGGATGCCTCC
GCATGCACCAGCTCCCAGCTGCTGCCGACGCCGGAGGAGGCGCAGGGGGG
GGGCAAGCTCGTGTCGTGCACGTGCGGGGGCGGCGAGGACGACTGGTCCG
CGTTGCTGTGCGCGCAGCAGCCGGACACGCGCCTGGAGCTGACGGTGCGC
GGCTTCGGCAACGCCACGCACCCCGCCACCATCGATGTCATCGAGACCGC
GGCGATTCGGCGCAAGGCGGACGAGGCGTGGCCCGGCCAGTACGACTACT
GGTTTCCCGCCGTGTTCAACGGGTCGCTGACGGGCTGCGAGGTGAGCGTC
GGCAAGTGCCTCGACATCCCCGGCACGACGCTCGCGCAGCGCGACTGCAC
CGTCTTCGCGTGCGCCGCGACGCGCACGCAGTGCCCGCCGCCCGGCTACG
ATGTCTGCGACGGCTTCCCGGACTGCCGTGCGCCGCCGGGCGCGCCGGGC
GCGTACAAGACCCACAAGTGCGACGCGATCCCGCAGTCCGGCAAGGCCTT
CACGGTGACGTGCGAAGTCGCGCCGACCGCCGACGGCCGCTTCGTCTGCT
ACTACCAGCAGCCGGGCGGGTTCGCGCCGCTCTCTGTGACGTGCGCAGCC
GGCGGCTGTGTGTACGACGGCGGCGCGCCGATA
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Coding sequence (CDS) from alignment at Contig_131:285068..286150-

>mRNA_13636 ID=mRNA_13636|Name=jgi.p|Trimin1|175870|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1083bp|location=Sequence derived from alignment at Contig_131:285068..286150- (Tribonema minus UTEX_B_3156 )
ATGATCGGGTGGAGATGGCGGCCGCCGTGGAGCGGTGGCAACACATTGGC
TGCTGCAGCAACTGCTGCTGCTGCTCTCTCCAGTCTGGCCTGTTACCACG
TTGCGACAGCGCAACATGCAGACGTTGACGGAGGAATCATCAAGCCGAGC
GCTGCAGCACGGACATTGCCTGCAGCAGCAACTATCAGAGCTACCTCACT
GCTTGCATCGGCAGCACCAGATCCAGCCTGGATCGAAGCTCAATGCCCGA
ATGCCTTCAAGTATCACACACCCGAGTGCTCCAACGGAGGCACGCTGTAC
GTGTACAACGGCACGGAGTCTCACAAGGAGAGCAGTTGTGCGCACTGCGA
CTGCCCCGAGGGCTGGGGCGGCCTGAGCTGCAATCTCTGCACCGACGTCG
GCTCCTGCCCGCCGCAGCAGCTGAGCGACGGCACGTTCAGGGATGCCTCC
GCATGCACCAGCTCCCAGCTGCTGCCGACGCCGGAGGAGGCGCAGGGGGG
GGGCAAGCTCGTGTCGTGCACGTGCGGGGGCGGCGAGGACGACTGGTCCG
CGTTGCTGTGCGCGCAGCAGCCGGACACGCGCCTGGAGCTGACGGTGCGC
GGCTTCGGCAACGCCACGCACCCCGCCACCATCGATGTCATCGAGACCGC
GGCGATTCGGCGCAAGGCGGACGAGGCGTGGCCCGGCCAGTACGACTACT
GGTTTCCCGCCGTGTTCAACGGGTCGCTGACGGGCTGCGAGGTGAGCGTC
GGCAAGTGCCTCGACATCCCCGGCACGACGCTCGCGCAGCGCGACTGCAC
CGTCTTCGCGTGCGCCGCGACGCGCACGCAGTGCCCGCCGCCCGGCTACG
ATGTCTGCGACGGCTTCCCGGACTGCCGTGCGCCGCCGGGCGCGCCGGGC
GCGTACAAGACCCACAAGTGCGACGCGATCCCGCAGTCCGGCAAGGCCTT
CACGGTGACGTGCGAAGTCGCGCCGACCGCCGACGGCCGCTTCGTCTGCT
ACTACCAGCAGCCGGGCGGGTTCGCGCCGCTCTCTGTGACGTGCGCAGCC
GGCGGCTGTGTGTACGACGGCGGCGCGCCGATA
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