mRNA_13603 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|175905
Unique NamemRNA_13603
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|175905 vs. uniprot
Match: A0A835ZBU8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBU8_9STRA)

HSP 1 Score: 701 bits (1810), Expect = 8.440e-253
Identity = 423/423 (100.00%), Postives = 423/423 (100.00%), Query Frame = 1 
Query:    1 MSRLLTQDLHRRASDETLDDRTAPRAAGGTGPSSEPVLWLDTCRVFTSCGHELVLVVQGFSSGFQIWDLTSTVAREIASSRTGDAVRCASLIGPWTAACGPGPCAGTGAAXXXXXXXXXKRARLAVTSSARVDAPPQDVRVFDLDAHRYTHVIACGAEVHGTAGGAAVLAIALAHEVRVHAAASLRELFRVRCCPQPLRGAAVLALGARWLAVQAEQAPTADAGAAASSLPHEAAADAGGXXXXXXXXXXXXXGSMTELAQGLMVGLYRLRGVGSSGLGLASEALSVSLKKAAAATGAAAAADSLGSSPFRAAATESLSSHDSAWNGSDGXXXXXXXAGMRASPEKGAGCGXXXXXXXXXXXAAGAVAVVDTCEGRAVAHFWGHREPLAALAFSTGGRLLASAPASGQTLVRVRERGCAARCV 1269
            MSRLLTQDLHRRASDETLDDRTAPRAAGGTGPSSEPVLWLDTCRVFTSCGHELVLVVQGFSSGFQIWDLTSTVAREIASSRTGDAVRCASLIGPWTAACGPGPCAGTGAAXXXXXXXXXKRARLAVTSSARVDAPPQDVRVFDLDAHRYTHVIACGAEVHGTAGGAAVLAIALAHEVRVHAAASLRELFRVRCCPQPLRGAAVLALGARWLAVQAEQAPTADAGAAASSLPHEAAADAGGXXXXXXXXXXXXXGSMTELAQGLMVGLYRLRGVGSSGLGLASEALSVSLKKAAAATGAAAAADSLGSSPFRAAATESLSSHDSAWNGSDGXXXXXXXAGMRASPEKGAGCGXXXXXXXXXXXAAGAVAVVDTCEGRAVAHFWGHREPLAALAFSTGGRLLASAPASGQTLVRVRERGCAARCV
Sbjct:    1 MSRLLTQDLHRRASDETLDDRTAPRAAGGTGPSSEPVLWLDTCRVFTSCGHELVLVVQGFSSGFQIWDLTSTVAREIASSRTGDAVRCASLIGPWTAACGPGPCAGTGAAXXXXXXXXXKRARLAVTSSARVDAPPQDVRVFDLDAHRYTHVIACGAEVHGTAGGAAVLAIALAHEVRVHAAASLRELFRVRCCPQPLRGAAVLALGARWLAVQAEQAPTADAGAAASSLPHEAAADAGGXXXXXXXXXXXXXGSMTELAQGLMVGLYRLRGVGSSGLGLASEALSVSLKKAAAATGAAAAADSLGSSPFRAAATESLSSHDSAWNGSDGXXXXXXXAGMRASPEKGAGCGXXXXXXXXXXXAAGAVAVVDTCEGRAVAHFWGHREPLAALAFSTGGRLLASAPASGQTLVRVRERGCAARCV 423
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|175905 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835ZBU8_9STRA8.440e-253100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_131contigContig_131:61538..62809 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|175905|e_gw1.131.21.1
Hectar predicted targeting categoryother localisation
TranscriptId176227
TrackFilteredModels1
ProteinId175905
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|175905gene_13603Tribonema minus UTEX_B_3156 geneContig_131 61538..62809 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13603_1exon_13603_1Tribonema minus UTEX_B_3156 exonContig_131 61538..62809 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13603CDS_13603Tribonema minus UTEX_B_3156 CDSContig_131 61538..62809 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|175905Trimin1|175905|e_gw1.131.21.1Tribonema minus UTEX_B_3156 polypeptideContig_131 61538..62809 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13603 ID=mRNA_13603|Name=jgi.p|Trimin1|175905|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1272bp|location=Sequence derived from alignment at Contig_131:61538..62809- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTCGCTTGCTGACCCAGGACCTGCACAGGAGAGCATCGGATGAGAC
GCTCGATGACAGGACCGCTCCTCGTGCTGCCGGCGGCACTGGGCCCTCGT
CGGAGCCCGTACTGTGGCTTGACACCTGCAGGGTCTTCACATCCTGCGGA
CACGAACTGGTTCTTGTCGTACAGGGCTTCTCATCCGGTTTTCAAATCTG
GGACCTGACATCGACAGTTGCGAGGGAGATCGCATCCTCCAGGACGGGCG
ACGCCGTCCGCTGCGCCTCCCTGATCGGGCCGTGGACGGCGGCATGCGGC
CCAGGACCCTGCGCTGGCACCGGCGCCGCTGGCTCTGCGGGGGCCGGCGG
CGGCGGCAAGCGCGCGCGGCTCGCGGTGACGTCCTCCGCTCGCGTGGACG
CCCCCCCCCAGGACGTGCGCGTCTTCGACCTCGACGCGCACCGCTACACG
CACGTGATCGCGTGCGGCGCCGAGGTGCACGGCACCGCGGGCGGCGCGGC
GGTGCTCGCGATCGCGCTCGCGCACGAGGTGCGCGTCCACGCCGCGGCGT
CGCTGCGCGAGCTCTTCCGCGTGCGCTGCTGCCCGCAGCCGCTGCGCGGC
GCCGCCGTGCTCGCGCTCGGCGCGCGCTGGCTCGCCGTGCAGGCGGAGCA
GGCGCCCACCGCAGACGCCGGCGCTGCCGCAAGCTCCCTGCCGCATGAAG
CCGCCGCCGATGCCGGCGGCAGCGGAGGCGGCGGCAGCAGCGGCGGCAGC
GGCGCCGGCGGCAGCATGACAGAGCTGGCGCAGGGCCTGATGGTCGGCCT
CTACCGCCTGCGCGGCGTCGGCAGCAGCGGCCTCGGGCTCGCGTCGGAGG
CGCTGTCCGTGTCGCTGAAGAAGGCGGCGGCAGCGACCGGCGCGGCGGCA
GCGGCGGACTCGCTCGGCAGCTCGCCATTCCGCGCCGCCGCCACGGAGAG
CCTCAGCTCGCACGACAGCGCGTGGAACGGGAGCGATGGCGGCGGCGGCG
GCGGCGGCAGCGCGGGCATGCGCGCGTCGCCGGAGAAGGGCGCGGGGTGC
GGCGGCAGCGGCGGCGCCGGCGGCAGCGCTCACGCGGCGGCGGGCGCGGT
GGCGGTGGTGGACACGTGCGAGGGGCGTGCGGTGGCGCACTTCTGGGGCC
ACCGCGAGCCGCTGGCGGCGCTGGCGTTCAGCACGGGGGGGCGGCTGCTG
GCGAGCGCGCCCGCGTCGGGGCAGACGCTGGTGAGAGTGCGCGAGCGCGG
CTGTGCGGCGCGCTGCGTGTGA
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protein sequence of jgi.p|Trimin1|175905

>Trimin1|175905|e_gw1.131.21.1 ID=Trimin1|175905|e_gw1.131.21.1|Name=jgi.p|Trimin1|175905|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=424bp
MSRLLTQDLHRRASDETLDDRTAPRAAGGTGPSSEPVLWLDTCRVFTSCG
HELVLVVQGFSSGFQIWDLTSTVAREIASSRTGDAVRCASLIGPWTAACG
PGPCAGTGAAGSAGAGGGGKRARLAVTSSARVDAPPQDVRVFDLDAHRYT
HVIACGAEVHGTAGGAAVLAIALAHEVRVHAAASLRELFRVRCCPQPLRG
AAVLALGARWLAVQAEQAPTADAGAAASSLPHEAAADAGGSGGGGSSGGS
GAGGSMTELAQGLMVGLYRLRGVGSSGLGLASEALSVSLKKAAAATGAAA
AADSLGSSPFRAAATESLSSHDSAWNGSDGGGGGGGSAGMRASPEKGAGC
GGSGGAGGSAHAAAGAVAVVDTCEGRAVAHFWGHREPLAALAFSTGGRLL
ASAPASGQTLVRVRERGCAARCV*
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mRNA from alignment at Contig_131:61538..62809-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13603 ID=mRNA_13603|Name=jgi.p|Trimin1|175905|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1272bp|location=Sequence derived from alignment at Contig_131:61538..62809- (Tribonema minus UTEX_B_3156 )
ATGTCTCGCTTGCTGACCCAGGACCTGCACAGGAGAGCATCGGATGAGAC
GCTCGATGACAGGACCGCTCCTCGTGCTGCCGGCGGCACTGGGCCCTCGT
CGGAGCCCGTACTGTGGCTTGACACCTGCAGGGTCTTCACATCCTGCGGA
CACGAACTGGTTCTTGTCGTACAGGGCTTCTCATCCGGTTTTCAAATCTG
GGACCTGACATCGACAGTTGCGAGGGAGATCGCATCCTCCAGGACGGGCG
ACGCCGTCCGCTGCGCCTCCCTGATCGGGCCGTGGACGGCGGCATGCGGC
CCAGGACCCTGCGCTGGCACCGGCGCCGCTGGCTCTGCGGGGGCCGGCGG
CGGCGGCAAGCGCGCGCGGCTCGCGGTGACGTCCTCCGCTCGCGTGGACG
CCCCCCCCCAGGACGTGCGCGTCTTCGACCTCGACGCGCACCGCTACACG
CACGTGATCGCGTGCGGCGCCGAGGTGCACGGCACCGCGGGCGGCGCGGC
GGTGCTCGCGATCGCGCTCGCGCACGAGGTGCGCGTCCACGCCGCGGCGT
CGCTGCGCGAGCTCTTCCGCGTGCGCTGCTGCCCGCAGCCGCTGCGCGGC
GCCGCCGTGCTCGCGCTCGGCGCGCGCTGGCTCGCCGTGCAGGCGGAGCA
GGCGCCCACCGCAGACGCCGGCGCTGCCGCAAGCTCCCTGCCGCATGAAG
CCGCCGCCGATGCCGGCGGCAGCGGAGGCGGCGGCAGCAGCGGCGGCAGC
GGCGCCGGCGGCAGCATGACAGAGCTGGCGCAGGGCCTGATGGTCGGCCT
CTACCGCCTGCGCGGCGTCGGCAGCAGCGGCCTCGGGCTCGCGTCGGAGG
CGCTGTCCGTGTCGCTGAAGAAGGCGGCGGCAGCGACCGGCGCGGCGGCA
GCGGCGGACTCGCTCGGCAGCTCGCCATTCCGCGCCGCCGCCACGGAGAG
CCTCAGCTCGCACGACAGCGCGTGGAACGGGAGCGATGGCGGCGGCGGCG
GCGGCGGCAGCGCGGGCATGCGCGCGTCGCCGGAGAAGGGCGCGGGGTGC
GGCGGCAGCGGCGGCGCCGGCGGCAGCGCTCACGCGGCGGCGGGCGCGGT
GGCGGTGGTGGACACGTGCGAGGGGCGTGCGGTGGCGCACTTCTGGGGCC
ACCGCGAGCCGCTGGCGGCGCTGGCGTTCAGCACGGGGGGGCGGCTGCTG
GCGAGCGCGCCCGCGTCGGGGCAGACGCTGGTGAGAGTGCGCGAGCGCGG
CTGTGCGGCGCGCTGCGTGTGA
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Coding sequence (CDS) from alignment at Contig_131:61538..62809-

>mRNA_13603 ID=mRNA_13603|Name=jgi.p|Trimin1|175905|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1272bp|location=Sequence derived from alignment at Contig_131:61538..62809- (Tribonema minus UTEX_B_3156 )
ATGTCTCGCTTGCTGACCCAGGACCTGCACAGGAGAGCATCGGATGAGAC
GCTCGATGACAGGACCGCTCCTCGTGCTGCCGGCGGCACTGGGCCCTCGT
CGGAGCCCGTACTGTGGCTTGACACCTGCAGGGTCTTCACATCCTGCGGA
CACGAACTGGTTCTTGTCGTACAGGGCTTCTCATCCGGTTTTCAAATCTG
GGACCTGACATCGACAGTTGCGAGGGAGATCGCATCCTCCAGGACGGGCG
ACGCCGTCCGCTGCGCCTCCCTGATCGGGCCGTGGACGGCGGCATGCGGC
CCAGGACCCTGCGCTGGCACCGGCGCCGCTGGCTCTGCGGGGGCCGGCGG
CGGCGGCAAGCGCGCGCGGCTCGCGGTGACGTCCTCCGCTCGCGTGGACG
CCCCCCCCCAGGACGTGCGCGTCTTCGACCTCGACGCGCACCGCTACACG
CACGTGATCGCGTGCGGCGCCGAGGTGCACGGCACCGCGGGCGGCGCGGC
GGTGCTCGCGATCGCGCTCGCGCACGAGGTGCGCGTCCACGCCGCGGCGT
CGCTGCGCGAGCTCTTCCGCGTGCGCTGCTGCCCGCAGCCGCTGCGCGGC
GCCGCCGTGCTCGCGCTCGGCGCGCGCTGGCTCGCCGTGCAGGCGGAGCA
GGCGCCCACCGCAGACGCCGGCGCTGCCGCAAGCTCCCTGCCGCATGAAG
CCGCCGCCGATGCCGGCGGCAGCGGAGGCGGCGGCAGCAGCGGCGGCAGC
GGCGCCGGCGGCAGCATGACAGAGCTGGCGCAGGGCCTGATGGTCGGCCT
CTACCGCCTGCGCGGCGTCGGCAGCAGCGGCCTCGGGCTCGCGTCGGAGG
CGCTGTCCGTGTCGCTGAAGAAGGCGGCGGCAGCGACCGGCGCGGCGGCA
GCGGCGGACTCGCTCGGCAGCTCGCCATTCCGCGCCGCCGCCACGGAGAG
CCTCAGCTCGCACGACAGCGCGTGGAACGGGAGCGATGGCGGCGGCGGCG
GCGGCGGCAGCGCGGGCATGCGCGCGTCGCCGGAGAAGGGCGCGGGGTGC
GGCGGCAGCGGCGGCGCCGGCGGCAGCGCTCACGCGGCGGCGGGCGCGGT
GGCGGTGGTGGACACGTGCGAGGGGCGTGCGGTGGCGCACTTCTGGGGCC
ACCGCGAGCCGCTGGCGGCGCTGGCGTTCAGCACGGGGGGGCGGCTGCTG
GCGAGCGCGCCCGCGTCGGGGCAGACGCTGGTGAGAGTGCGCGAGCGCGG
CTGTGCGGCGCGCTGCGTGTGA
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