mRNA_13556 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|175477
Unique NamemRNA_13556
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|175477 vs. uniprot
Match: A0A835ZHE6_9STRA (Ankyrin repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHE6_9STRA)

HSP 1 Score: 157 bits (398), Expect = 2.400e-48
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1 
Query:    1 MELDDGADVDARDAAGNTLLLLAARQGHKRAVKLLLRRGATLNAQNRDXXXXXXXXXXXXXAELAAYLRSKGADDALLNAQGLTCYEGLTMHELERL 291
            MELDDGADVDARDAAGNTLLLLAARQGHKRAVKLLLRRGATLNAQNRDXXXXXXXXXXXXXAELAAYLRSKGADDALLNAQGLTCYEGLTMHELERL
Sbjct:    1 MELDDGADVDARDAAGNTLLLLAARQGHKRAVKLLLRRGATLNAQNRDXXXXXXXXXXXXXAELAAYLRSKGADDALLNAQGLTCYEGLTMHELERL 97
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BLAST of jgi.p|Trimin1|175477 vs. uniprot
Match: A0A812X336_SYMMI (HOS4 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812X336_SYMMI)

HSP 1 Score: 83.6 bits (205), Expect = 6.310e-19
Identity = 43/88 (48.86%), Postives = 57/88 (64.77%), Query Frame = 1 
Query:    7 LDDGADVDARDAAGNTLLLLAARQGHKRAVKLLLRRGATLNAQNRDXXXXXXXXXXXXXAELAAYLRSKGADDALLNAQGLTCYEGLT 270
            L++   +D  D  GNTLL+LAA+QG +R  K LLRRGA +N Q+                ELA YL+S+GADD++LN +GLTCYEGL+
Sbjct:    5 LEEDISIDTSDQFGNTLLILAAQQGSRRMCKYLLRRGANINIQSLAGHTALRYCYAYSHFELADYLKSRGADDSILNGEGLTCYEGLS 92
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BLAST of jgi.p|Trimin1|175477 vs. uniprot
Match: F0XVE9_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XVE9_AURAN)

HSP 1 Score: 82.0 bits (201), Expect = 2.420e-18
Identity = 41/89 (46.07%), Postives = 55/89 (61.80%), Query Frame = 1 
Query:   25 VDARDAAGNTLLLLAARQGHKRAVKLLLRRGATLNAQNRDXXXXXXXXXXXXXAELAAYLRSKGADDALLNAQGLTCYEGLTMHELERL 291
            +D +D  GNTLL +A + G+KR  KL LRRGA +N  N +              ++A YL+SKGADD   N+ GLTCYEGL+M E+E +
Sbjct:   10 IDYQDELGNTLLSVAVQNGNKRIAKLTLRRGANINLPNNNGQTVLHYAYAYGFEDIAEYLKSKGADDRPKNSDGLTCYEGLSMQEIEAI 98
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BLAST of jgi.p|Trimin1|175477 vs. uniprot
Match: A0A2R5GM67_9STRA (Ankyrin repeat protein, putative n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GM67_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 9.880e-18
Identity = 42/89 (47.19%), Postives = 58/89 (65.17%), Query Frame = 1 
Query:   25 VDARDAAGNTLLLLAARQGHKRAVKLLLRRGATLNAQNRDXXXXXXXXXXXXXAELAAYLRSKGADDALLNAQGLTCYEGLTMHELERL 291
            +DA+D+ GNTLL +AA+ G+KR  K+ LRRGA +N QN +               LA Y   KGADD+L+NA GLTCYEGL++ +++ L
Sbjct: 1196 IDAKDSLGNTLLSIAAQNGNKRIAKMCLRRGADINTQNLNGQTVLHYCMAYGFEPLAEYFMGKGADDSLVNADGLTCYEGLSLEDVQNL 1284
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BLAST of jgi.p|Trimin1|175477 vs. uniprot
Match: A0A7S0Y9L9_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0Y9L9_HEMAN)

HSP 1 Score: 83.2 bits (204), Expect = 1.640e-17
Identity = 44/87 (50.57%), Postives = 52/87 (59.77%), Query Frame = 1 
Query:    7 LDDGADVDARDAAGNTLLLLAARQGHKRAVKLLLRRGATLNAQNRDXXXXXXXXXXXXXAELAAYLRSKGADDALLNAQGLTCYEGL 267
            LD G  VD +D AGNTLL +AA+ GHK  +K+LLRRG  LN QN                +L  YL +KGADD + N  GLTCYEGL
Sbjct:  137 LDAGCPVDLKDPAGNTLLNVAAQNGHKSIIKMLLRRGGALNTQNHKGQTPLHFCFTYGFTDLGNYLVTKGADDTVQNFAGLTCYEGL 223
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BLAST of jgi.p|Trimin1|175477 vs. uniprot
Match: A0A8J2WIX1_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WIX1_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 8.800e-17
Identity = 43/89 (48.31%), Postives = 55/89 (61.80%), Query Frame = 1 
Query:   25 VDARDAAGNTLLLLAARQGHKRAVKLLLRRGATLNAQNRDXXXXXXXXXXXXXAELAAYLRSKGADDALLNAQGLTCYEGLTMHELERL 291
            +D +D  GNTLL +A + G+KR  KL LRRGA +N  N                +LA YL+SKGADD   NA GLTCYEGL+M E+E++
Sbjct: 1607 IDYQDELGNTLLSIAVQNGNKRIAKLCLRRGANVNLPNNTGQTVLHYAYAYGFEDLAEYLKSKGADDRPKNADGLTCYEGLSMEEIEQI 1695
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BLAST of jgi.p|Trimin1|175477 vs. uniprot
Match: L1JVV8_GUITC (Uncharacterized protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JVV8_GUITC)

HSP 1 Score: 75.9 bits (185), Expect = 4.820e-16
Identity = 40/84 (47.62%), Postives = 47/84 (55.95%), Query Frame = 1 
Query:   16 GADVDARDAAGNTLLLLAARQGHKRAVKLLLRRGATLNAQNRDXXXXXXXXXXXXXAELAAYLRSKGADDALLNAQGLTCYEGL 267
            G  VD +D  GNTLL +AA+ GHK  +K LLRRGA +N QN                +L  YL  KGADD + N   LTCYEGL
Sbjct:    1 GCPVDLKDDFGNTLLNIAAQNGHKNIIKALLRRGANINTQNHKGNTPLHFCFTYGFTDLGNYLVQKGADDTIENVSCLTCYEGL 84
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BLAST of jgi.p|Trimin1|175477 vs. uniprot
Match: A0A7S2KYF9_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KYF9_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 7.750e-16
Identity = 40/89 (44.94%), Postives = 56/89 (62.92%), Query Frame = 1 
Query:   25 VDARDAAGNTLLLLAARQGHKRAVKLLLRRGATLNAQNRDXXXXXXXXXXXXXAELAAYLRSKGADDALLNAQGLTCYEGLTMHELERL 291
            +D  D AGNTLL+++ + G+KR  KL LRRG T+N QN +              +L  YL SKGADD+++N  GLTCYEGL++ ++  L
Sbjct: 1393 IDYVDGAGNTLLMISCQNGNKRIAKLCLRRGGTINLQNMNGQTCLHYAFGYGFDDLGDYLISKGADDSIVNVDGLTCYEGLSLDDVAAL 1481
[Close]
BLAST of jgi.p|Trimin1|175477 vs. uniprot
Match: A0A7S4KH41_GUITH (Hypothetical protein (Fragment) n=2 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4KH41_GUITH)

HSP 1 Score: 80.9 bits (198), Expect = 8.260e-16
Identity = 42/87 (48.28%), Postives = 54/87 (62.07%), Query Frame = 1 
Query:    7 LDDGADVDARDAAGNTLLLLAARQGHKRAVKLLLRRGATLNAQNRDXXXXXXXXXXXXXAELAAYLRSKGADDALLNAQGLTCYEGL 267
            LD G D + RD  GNTL+++AA+ G K+  K+LLRRGA LNAQN                +L  YLR KGA+D +LN  GL+CY+GL
Sbjct:   66 LDGGVDTETRDEFGNTLIIVAAQTGSKKMCKILLRRGADLNAQNWRGQTALHFCFQYRYEDLGNYLREKGANDGILNHYGLSCYQGL 152
[Close]
BLAST of jgi.p|Trimin1|175477 vs. uniprot
Match: A0A2D4BMR4_PYTIN (WW domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BMR4_PYTIN)

HSP 1 Score: 80.5 bits (197), Expect = 1.450e-15
Identity = 43/89 (48.31%), Postives = 53/89 (59.55%), Query Frame = 1 
Query:   25 VDARDAAGNTLLLLAARQGHKRAVKLLLRRGATLNAQNRDXXXXXXXXXXXXXAELAAYLRSKGADDALLNAQGLTCYEGLTMHELERL 291
            +DA+DA GNTLL +A +  +KR  KL LRRGA +N QN +              +L  YL  KGA D LLNA GLTCYEGLT   ++ L
Sbjct: 1644 IDAKDATGNTLLSIACQNNNKRIAKLCLRRGADINTQNLNGQSVLHYCHEYGFHDLMEYLVEKGARDDLLNADGLTCYEGLTKEAVDSL 1732
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|175477 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZHE6_9STRA2.400e-48100.00Ankyrin repeat-containing domain protein n=1 Tax=T... [more]
A0A812X336_SYMMI6.310e-1948.86HOS4 protein n=1 Tax=Symbiodinium microadriaticum ... [more]
F0XVE9_AURAN2.420e-1846.07Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A2R5GM67_9STRA9.880e-1847.19Ankyrin repeat protein, putative n=1 Tax=Hondaea f... [more]
A0A7S0Y9L9_HEMAN1.640e-1750.57Hypothetical protein n=2 Tax=Hemiselmis andersenii... [more]
A0A8J2WIX1_9STRA8.800e-1748.31Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
L1JVV8_GUITC4.820e-1647.62Uncharacterized protein (Fragment) n=1 Tax=Guillar... [more]
A0A7S2KYF9_9STRA7.750e-1644.94Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S4KH41_GUITH8.260e-1648.28Hypothetical protein (Fragment) n=2 Tax=Guillardia... [more]
A0A2D4BMR4_PYTIN1.450e-1548.31WW domain-containing protein n=1 Tax=Pythium insid... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_126contigContig_126:183750..184043 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|175477|e_gw1.126.81.1
BRITEko00000,ko00001,ko00002,ko01000
KEGG rclassRC00002,RC00017
KEGG ReactionR01021,R01468
KEGG ModuleM00090,M00092
KEGG Pathwayko00564,ko01100,ko05231,map00564,map01100,map05231
KEGG koko:K00866,ko:K00894,ko:K14156
EC2.7.1.32,2.7.1.82
GOsGO:0000166,GO:0001505,GO:0003674,GO:0003824,GO:0004103,GO:0004104,GO:0004305,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005938,GO:0006066,GO:0006576,GO:0006580,GO:0006629,GO:0006644,GO:0006646,GO:0006650,GO:0006656,GO:0006657,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006869,GO:0007275,GO:0007517,GO:0008144,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009308,GO:0009636,GO:0009987,GO:0010033,GO:0010876,GO:0014070,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0016787,GO:0016788,GO:0017076,GO:0019637,GO:0019695,GO:0030554,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0033036,GO:0033265,GO:0034308,GO:0034641,GO:0035639,GO:0036094,GO:0042133,GO:0042165,GO:0042221,GO:0042439,GO:0042493,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043169,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0045017,GO:0046337,GO:0046470,GO:0046474,GO:0046486,GO:0046983,GO:0048513,GO:0048731,GO:0048856,GO:0050896,GO:0051179,GO:0051234,GO:0052689,GO:0061061,GO:0065007,GO:0065008,GO:0070405,GO:0071702,GO:0071704,GO:0071944,GO:0090407,GO:0097159,GO:0097164,GO:0097367,GO:0099568,GO:1901160,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1903165,GO:1904681
Preferred nameCHKA
Descriptioncholine kinase activity
COG categoryM
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0510@1|root,KOG2686@2759|Eukaryota
Evalue4.7e-19
Seed ortholog36331.EPrPI00000016253
Hectar predicted targeting categoryother localisation
TranscriptId175799
TrackFilteredModels1
ProteinId175477
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|175477gene_13556Tribonema minus UTEX_B_3156 geneContig_126 183750..184043 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13556_1exon_13556_1Tribonema minus UTEX_B_3156 exonContig_126 183750..184043 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13556CDS_13556Tribonema minus UTEX_B_3156 CDSContig_126 183750..184043 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|175477Trimin1|175477|e_gw1.126.81.1Tribonema minus UTEX_B_3156 polypeptideContig_126 183750..184043 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13556 ID=mRNA_13556|Name=jgi.p|Trimin1|175477|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=294bp|location=Sequence derived from alignment at Contig_126:183750..184043- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCTGGACGACGGCGCGGACGTCGACGCGCGCGACGCCGCCGGCAA
CACGCTGCTGCTGCTGGCGGCGCGCCAGGGGCACAAGCGCGCCGTCAAGC
TGCTGCTGCGGCGCGGCGCGACGCTCAACGCGCAGAACCGCGACGGCAAC
GCCGCGCTGCACTTCTGCCACGCGCACGGCCATGCGGAGCTCGCGGCGTA
CCTGCGCTCCAAGGGCGCCGACGACGCGCTCCTCAACGCGCAGGGGCTTA
CATGCTACGAGGGGCTCACCATGCACGAGCTGGAACGCCTCTGA
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protein sequence of jgi.p|Trimin1|175477

>Trimin1|175477|e_gw1.126.81.1 ID=Trimin1|175477|e_gw1.126.81.1|Name=jgi.p|Trimin1|175477|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=98bp
MELDDGADVDARDAAGNTLLLLAARQGHKRAVKLLLRRGATLNAQNRDGN
AALHFCHAHGHAELAAYLRSKGADDALLNAQGLTCYEGLTMHELERL*
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mRNA from alignment at Contig_126:183750..184043-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13556 ID=mRNA_13556|Name=jgi.p|Trimin1|175477|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=294bp|location=Sequence derived from alignment at Contig_126:183750..184043- (Tribonema minus UTEX_B_3156 )
ATGGAGCTGGACGACGGCGCGGACGTCGACGCGCGCGACGCCGCCGGCAA
CACGCTGCTGCTGCTGGCGGCGCGCCAGGGGCACAAGCGCGCCGTCAAGC
TGCTGCTGCGGCGCGGCGCGACGCTCAACGCGCAGAACCGCGACGGCAAC
GCCGCGCTGCACTTCTGCCACGCGCACGGCCATGCGGAGCTCGCGGCGTA
CCTGCGCTCCAAGGGCGCCGACGACGCGCTCCTCAACGCGCAGGGGCTTA
CATGCTACGAGGGGCTCACCATGCACGAGCTGGAACGCCTCTGA
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Coding sequence (CDS) from alignment at Contig_126:183750..184043-

>mRNA_13556 ID=mRNA_13556|Name=jgi.p|Trimin1|175477|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=294bp|location=Sequence derived from alignment at Contig_126:183750..184043- (Tribonema minus UTEX_B_3156 )
ATGGAGCTGGACGACGGCGCGGACGTCGACGCGCGCGACGCCGCCGGCAA
CACGCTGCTGCTGCTGGCGGCGCGCCAGGGGCACAAGCGCGCCGTCAAGC
TGCTGCTGCGGCGCGGCGCGACGCTCAACGCGCAGAACCGCGACGGCAAC
GCCGCGCTGCACTTCTGCCACGCGCACGGCCATGCGGAGCTCGCGGCGTA
CCTGCGCTCCAAGGGCGCCGACGACGCGCTCCTCAACGCGCAGGGGCTTA
CATGCTACGAGGGGCTCACCATGCACGAGCTGGAACGCCTCTGA
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