mRNA_13550 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|14202
Unique NamemRNA_13550
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|14202 vs. uniprot
Match: A0A835ZCM9_9STRA (Ribosomal protein S5, C-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCM9_9STRA)

HSP 1 Score: 525 bits (1353), Expect = 4.840e-186
Identity = 281/281 (100.00%), Postives = 281/281 (100.00%), Query Frame = 1 
Query:  235 MGLALDPAAEARFAAWEARVRELGDDLAEPGLPDDLAEAWDVPPLAPXXXXXXXXXXXXXXXXXRAGRYQLLSDEDESDHGSDFDANAADVDAEMVGEDGEDLVDYGTGDWVEHLVMQDRTQKITKSGQIMSYRTLVTVGNANGTGGFGMGKGAEPQQSVVRAFRDARRSLIYVERYKMSGLLYPLYGEHNNLKVYIYPTRPGSGLRAGDIIEGILEGFGIADATAKAYGKRHPYSVVRATFNALLGHEGLHDVAMRRGARILSVHKTLLGRHHRDDPRYY 1077
            MGLALDPAAEARFAAWEARVRELGDDLAEPGLPDDLAEAWDVPPLAPXXXXXXXXXXXXXXXXXRAGRYQLLSDEDESDHGSDFDANAADVDAEMVGEDGEDLVDYGTGDWVEHLVMQDRTQKITKSGQIMSYRTLVTVGNANGTGGFGMGKGAEPQQSVVRAFRDARRSLIYVERYKMSGLLYPLYGEHNNLKVYIYPTRPGSGLRAGDIIEGILEGFGIADATAKAYGKRHPYSVVRATFNALLGHEGLHDVAMRRGARILSVHKTLLGRHHRDDPRYY
Sbjct:    1 MGLALDPAAEARFAAWEARVRELGDDLAEPGLPDDLAEAWDVPPLAPXXXXXXXXXXXXXXXXXRAGRYQLLSDEDESDHGSDFDANAADVDAEMVGEDGEDLVDYGTGDWVEHLVMQDRTQKITKSGQIMSYRTLVTVGNANGTGGFGMGKGAEPQQSVVRAFRDARRSLIYVERYKMSGLLYPLYGEHNNLKVYIYPTRPGSGLRAGDIIEGILEGFGIADATAKAYGKRHPYSVVRATFNALLGHEGLHDVAMRRGARILSVHKTLLGRHHRDDPRYY 281
[Close]
BLAST of jgi.p|Trimin1|14202 vs. uniprot
Match: A0A7S2SS45_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SS45_9STRA)

HSP 1 Score: 164 bits (416), Expect = 1.860e-43
Identity = 89/193 (46.11%), Postives = 118/193 (61.14%), Query Frame = 1 
Query:  460 DESDHGSDFDANAADVDAEMV--GEDGEDLVDYGT-GDWVEHLVMQDRTQKITKSGQIMSYRTLVTVGNANGTGGFGMGKGAEPQQSVVRAFRDARRSLIYVERYKMSGLLYPLYGEHNNLKVYIYPTRPGSGLRAGDIIEGILEGFGIADATAKAYGKRHPYSVVRATFNALLGHEGLHDVAMRRGARILSV 1029
            D+  HG + D  A D DA +   G   ED V+    G W E +V  DR QK+ K G IMSYRTLV VGN +G GGFG+GK  +  +SV R  R A+++L+ V+RYK + L++ + G HNN KV +    PG G + G   + IL+  GIAD TAKAYG+R P SVV+A F AL  H+ L  ++  RG RIL +
Sbjct:  181 DDGGHGHEIDLEATDADAFLRRRGMQAEDEVEPELPGRWAETIVRADRVQKVIKGGMIMSYRTLVVVGNGHGVGGFGVGKAQDAAESVARGIRQAKKNLVVVDRYKNTALVHTVEGRHNNCKVVLRAVPPGYGFKGGRTAQAILQQMGIADCTAKAYGRRTPASVVQAIFKALARHKSLDQISRSRGRRILEM 373
[Close]
BLAST of jgi.p|Trimin1|14202 vs. uniprot
Match: A0A7S1YM29_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YM29_9STRA)

HSP 1 Score: 148 bits (374), Expect = 1.860e-37
Identity = 75/174 (43.10%), Postives = 111/174 (63.79%), Query Frame = 1 
Query:  520 VGEDGE--DLVDYGTGDWVEHLVMQDRTQKITKSGQIMSYRTLVTVGNANGTGGFGMGKGAEPQQSVVRAFRDARRSLIYVERYKMSGLLYPLYGEHNNLKVYIYPTRPGSGLRAGDIIEGILEGFGIADATAKAYGKRHPYSVVRATFNALLGHEGLHDVAMRRGARILSVHK 1035
            +G+DG   D      GDW +  V  DR QK+ + G  + YR L   GNANG GGFG GK   PQ++V +A R+A+R++ + E +  +GL   L G HN+ KV +     G GL+   +IE IL+ FGI+DAT K++G R+ ++VVRATF ALL H+ L ++A++RG R++++ K
Sbjct:  191 IGDDGNPIDPNQKAFGDWGDMTVRVDRVQKVRRGGTTVRYRALAVGGNANGCGGFGTGKAHSPQEAVTKACREAKRNIHFFEPHLGTGLTTDLVGTHNSCKVILLSVPKGYGLKGHPLIEDILKYFGISDATGKSFGNRNQFNVVRATFKALLTHQTLEEIALKRGKRLINIQK 364
[Close]
BLAST of jgi.p|Trimin1|14202 vs. uniprot
Match: A0A1Z5K7E2_FISSO (Small subunit ribosomal protein S5 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K7E2_FISSO)

HSP 1 Score: 148 bits (374), Expect = 3.410e-37
Identity = 72/161 (44.72%), Postives = 107/161 (66.46%), Query Frame = 1 
Query:  559 GDWVEHLVMQDRTQKITKSGQIMSYRTLVTVGNANGTGGFGMGKGAEPQQSVVRAFRDARRSLIYVERYKMSGLLYPLYGEHNNLKVYIYPTRPGSGLRAGDIIEGILEGFGIADATAKAYGKRHPYSVVRATFNALLGHEGLHDVAMRRGARILSVHKTL 1041
            G+W E LV  DRT K+ + G++ SYR LV  GN NG GGFG+GK  +P  +V  A R  +R++ +V+RY+ +GL   L G+ N+ KVY+  T    GLR   +I  IL+ FGI +  AK++G R+PY+V RATF AL+ HE + D+A++RG R++S+ + +
Sbjct:  238 GEWSEMLVTVDRTTKLWRGGRLESYRALVIGGNLNGCGGFGIGKSKDPINAVAVASRKCKRNIFFVDRYQGNGLTSDLAGKQNSCKVYLRST--DDGLRGNHLIREILKRFGITNCVAKSHGNRNPYNVTRATFKALMTHESIEDIALKRGKRLVSIDRAM 396
[Close]
BLAST of jgi.p|Trimin1|14202 vs. uniprot
Match: A0A7S2M397_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2M397_9STRA)

HSP 1 Score: 150 bits (380), Expect = 7.500e-37
Identity = 79/204 (38.73%), Postives = 125/204 (61.27%), Query Frame = 1 
Query:  427 RAGRYQLLSDEDESDHGSDFDANAADVDAEMVGEDGEDLVDYGTGDWVEHLVMQDRTQKITKSGQIMSYRTLVTVGNANGTGGFGMGKGAEPQQSVVRAFRDARRSLIYVERYKMSGLLYPLYGEHNNLKVYIYPTRPGSGLRAGDIIEGILEGFGIADATAKAYGKRHPYSVVRATFNALLGHEGLHDVAMRRGARILSVHKT 1038
            R   Y +L  E +++H  D +    ++  EM+ ++GED      G W E  +  DR QK+ + G  + YR LV  GN NG  GFG+GK   P +++V+A +  +R++ YV+RY  +GL Y L G+HN+ KV +   RP  GL    +I  IL+  GI DAT+K++G R+PY+VV ATF AL+ HE L ++A++RG +++++ + 
Sbjct:  381 RTKYYNIL--ERDNEHEKDREEKEDEI-LEMI-KNGEDPNQEAFGPWAECTIKVDRVQKVERGGTTVRYRALVIGGNGNGAAGFGIGKALSPNEAIVKACKHCKRNVFYVDRYLNTGLSYDLAGKHNSCKVVLRAVRPDYGLHGHPLICEILKHAGITDATSKSHGNRNPYNVVYATFKALMTHESLEEIALKRGKKLMNLQRA 580
[Close]
BLAST of jgi.p|Trimin1|14202 vs. uniprot
Match: A0A7S1U8N8_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U8N8_9STRA)

HSP 1 Score: 141 bits (356), Expect = 1.800e-36
Identity = 71/159 (44.65%), Postives = 101/159 (63.52%), Query Frame = 1 
Query:  559 GDWVEHLVMQDRTQKITKSGQIMSYRTLVTVGNANGTGGFGMGKGAEPQQSVVRAFRDARRSLIYVERYKMSGLLYPLYGEHNNLKVYIYPTRPGSGLRAGDIIEGILEGFGIADATAKAYGKRHPYSVVRATFNALLGHEGLHDVAMRRGARILSVHK 1035
            G W+E+L+M D+ QK+   G +  +R L  VGN NG  GFG+GK  + Q +  ++FR+A++++I V+RY    L + LYG+HN  +V+IY     + LRAG I   I+E  GI DAT +  G  +PYSVVRATFNAL  H  +   A  RG RILS+++
Sbjct:   52 GPWMENLIMVDQVQKVVPGGTVPRFRALTVVGNINGAVGFGVGKAEDIQDATEKSFRNAKKNIIIVDRYFGRALYHDLYGKHNGCRVWIYARPVNTELRAGRITAAIMEAAGIMDATVRIDGPMNPYSVVRATFNALSKHRSIVHHARVRGRRILSLYR 210
[Close]
BLAST of jgi.p|Trimin1|14202 vs. uniprot
Match: A0A7S4IDP2_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IDP2_9STRA)

HSP 1 Score: 142 bits (359), Expect = 1.070e-34
Identity = 67/160 (41.88%), Postives = 102/160 (63.75%), Query Frame = 1 
Query:  559 GDWVEHLVMQDRTQKITKSGQIMSYRTLVTVGNANGTGGFGMGKGAEPQQSVVRAFRDARRSLIYVERYKMSGLLYPLYGEHNNLKVYIYPTRPGSGLRAGDIIEGILEGFGIADATAKAYGKRHPYSVVRATFNALLGHEGLHDVAMRRGARILSVHKT 1038
            G W E ++  DR QK+ + G ++ YR LV  GNANG  GFG+GK   P ++   A +  R ++ +V+RY  SGL Y L G++N+ KV +   RP  GL   D++  IL+ FGI D + K +G R+ ++VVRATF ALL HE + ++A++RG R+L++ + 
Sbjct:  283 GPWSETIIRVDRVQKVQRGGTMVRYRALVVGGNANGCAGFGVGKAKSPNEATAAAVKMCRTNIFFVDRYMGSGLSYSLVGKNNSCKVLLRTVRPNFGLCGHDLVCLILKYFGITDCSNKTHGNRNQFNVVRATFKALLTHESMEEIALKRGKRLLNIERA 442
[Close]
BLAST of jgi.p|Trimin1|14202 vs. uniprot
Match: A0A7S3PAC5_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3PAC5_9STRA)

HSP 1 Score: 140 bits (352), Expect = 4.170e-34
Identity = 74/192 (38.54%), Postives = 119/192 (61.98%), Query Frame = 1 
Query:  514 EMVGEDGEDLV----------------DYGTGDWVEHLVMQDRTQKITKSGQIMSYRTLVTVGNANGTGGFGMGKGAEPQQSVVRAFRDARRSLIYVERYKMSGLLYPLYGEHNNLKVYIYPTRPGSGLRAGDIIEGILEGFGIADATAKAYGKRHPYSVVRATFNALLGHEGLHDVAMRRGARILSVHKTL 1041
            +++GEDGED                      G+W E L+  DR+ K+ + G++ SYR L+  GN NG GGFG+GK ++P ++V  A R A+R++ +V+RY+ +GL   L G+ N+ KV I  T   +GLR  ++   IL  FGI +A  KA+G RHP++VVRATF AL+ H+ + +++++RG R++S+ + +
Sbjct:  200 QLLGEDGEDXXXXXXXXXXRENRIDPNQLAHGEWSELLIGVDRSIKLWRGGRLESYRALMIGGNCNGCGGFGIGKSSDPIKAVDLAGRKAKRNIFFVDRYQNNGLTSHLSGKMNSTKVIIRAT--DNGLRGNELCMEILMRFGITNAVCKAHGNRHPWNVVRATFKALMTHQSIEEISLKRGKRLVSLDRAM 389
[Close]
BLAST of jgi.p|Trimin1|14202 vs. uniprot
Match: A0A7S2UAP2_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UAP2_9STRA)

HSP 1 Score: 140 bits (352), Expect = 4.490e-34
Identity = 64/160 (40.00%), Postives = 103/160 (64.38%), Query Frame = 1 
Query:  559 GDWVEHLVMQDRTQKITKSGQIMSYRTLVTVGNANGTGGFGMGKGAEPQQSVVRAFRDARRSLIYVERYKMSGLLYPLYGEHNNLKVYIYPTRPGSGLRAGDIIEGILEGFGIADATAKAYGKRHPYSVVRATFNALLGHEGLHDVAMRRGARILSVHKT 1038
            GDW E +V  DR QK+ + G ++ YR LV  GN +G  GFG+ K   PQ +   A R  +R++ +++RY+ SGL   L G HN+ +V +   +P  GL+   ++E IL+ FGI+D +AK +G R+ Y+VVRATF A++ HE + ++A++RG R++ + + 
Sbjct:  233 GDWSETVVRVDRVQKVQRGGTMVRYRALVVGGNCHGCAGFGIAKRDNPQDATEAAARLCKRNIFFIDRYRNSGLTSDLAGRHNSCRVILRHVQPHMGLKGHPLVEDILKYFGISDCSAKTHGNRNIYNVVRATFKAIMTHESMEEIALKRGKRLMPMDRA 392
[Close]
BLAST of jgi.p|Trimin1|14202 vs. uniprot
Match: A0A7R9WRG6_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WRG6_9STRA)

HSP 1 Score: 138 bits (347), Expect = 1.690e-33
Identity = 71/160 (44.38%), Postives = 103/160 (64.38%), Query Frame = 1 
Query:  559 GDWVEHLVMQDRTQKITKSGQIMSYRTLVTVGNANGTGGFGMGKGAEPQQSVVRAFRDARRSLIYVERYKMSGLLYPLYGEHNNLKVYIYPTRPGSGLRAGDIIEGILEGFGIADATAKAYGKRHPYSVVRATFNALLGHEGLHDVAMRRGARILSVHKT 1038
            GDW E +V  DR +K+ + G+I S+R LV  GN  G GGFG+GK  EP+ +V  A R ARR++ +V+RY+  G+   L G  NN +V +  T   +GLR   +   IL+  GI +  AKA+G R+ Y+VVRATF AL+ HE L D++M+RG R++++ K 
Sbjct:  218 GDWGEMVVRTDRVRKMWRGGRIESFRALVIGGNLTGCGGFGVGKSFEPEDAVELACRMARRNIFFVDRYRNRGITRDLVGRQNNCRVQLRST--DNGLRGNPLCCEILKLMGITNVVAKAHGPRNHYNVVRATFKALMTHESLEDISMKRGVRLVNLQKA 375
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|14202 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZCM9_9STRA4.840e-186100.00Ribosomal protein S5, C-terminal domain-containing... [more]
A0A7S2SS45_9STRA1.860e-4346.11Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S1YM29_9STRA1.860e-3743.10Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A1Z5K7E2_FISSO3.410e-3744.72Small subunit ribosomal protein S5 n=2 Tax=Fistuli... [more]
A0A7S2M397_9STRA7.500e-3738.73Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S1U8N8_9STRA1.800e-3644.65Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S4IDP2_9STRA1.070e-3441.88Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S3PAC5_9STRA4.170e-3438.54Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7S2UAP2_9STRA4.490e-3440.00Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7R9WRG6_9STRA1.690e-3344.38Hypothetical protein n=1 Tax=Craspedostauros austr... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_126contigContig_126:127551..131366 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|14202|CE14201_83
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
KEGG ModuleM00178,M00179,M00403
KEGG Pathwayko03010,ko04141,map03010,map04141
KEGG koko:K02988,ko:K14026
GOsGO:0000313,GO:0000314,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0005761,GO:0005763,GO:0005840,GO:0006412,GO:0006414,GO:0006415,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016020,GO:0016043,GO:0019538,GO:0019866,GO:0022411,GO:0031090,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032543,GO:0032984,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0070125,GO:0070126,GO:0071704,GO:0071840,GO:0098798,GO:0140053,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Preferred nameMRPS5
Descriptionstructural constituent of ribosome
COG categoryJ
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0098@1|root,KOG2646@2759|Eukaryota
Evalue3.35e-40
Seed ortholog2880.D7FTY3
Hectar predicted targeting categoryother localisation
TranscriptId14524
TrackFilteredModels1
ProteinId14202
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|14202gene_13550Tribonema minus UTEX_B_3156 geneContig_126 127551..131366 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|14202Trimin1|14202|CE14201_83Tribonema minus UTEX_B_3156 polypeptideContig_126 127649..131132 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13550_4exon_13550_4Tribonema minus UTEX_B_3156 exonContig_126 127551..127912 -
exon_13550_3exon_13550_3Tribonema minus UTEX_B_3156 exonContig_126 128470..128682 -
exon_13550_2exon_13550_2Tribonema minus UTEX_B_3156 exonContig_126 130078..130290 -
exon_13550_1exon_13550_1Tribonema minus UTEX_B_3156 exonContig_126 130977..131366 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_13550UTR3_13550Tribonema minus UTEX_B_3156 three_prime_UTRContig_126 127551..127648 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13550CDS_13550Tribonema minus UTEX_B_3156 CDSContig_126 130977..131132 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_13550UTR5_13550Tribonema minus UTEX_B_3156 five_prime_UTRContig_126 131133..131366 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13550 ID=mRNA_13550|Name=jgi.p|Trimin1|14202|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1178bp|location=Sequence derived from alignment at Contig_126:127551..131366- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GCGGTCGACGCGCTCGCGGCGTCACCGCCGCCCGCTGCCGCCGACGGCAG
GCGCCCGCGGCCGCCGCGCGTGCCGACGCTCACCTACGATGACCTCTTTG
CGCACACGGCGCGCACGCCGGGGCACGTGCTGTCGCCGTACGACGCGGCG
CCGGCCCTGCGCGGCGGCGCGGGCATCGTCGAGGCGTTCGACCGTGTGGT
CGCGGGCGAGGCGTACGACCGCGTCGTCGCGGACATGGGGCTTGCGCTCG
ACCCCGCCGCGGAGGCGCGCTTCGCGGCGTGGGAGGCGCGCGTGCGCGAG
CTCGGCGACGACCTCGCGGAGCCCGGGCTGCCGGACGACCTCGCCGAGGC
GTGGGACGTGCCGCCGCTCGCGCCGCCGCCGCCCAACCAGGTCGCCAAGG
AGCAGCGCCGCGCCGCCGCGGCCGCGCGCGCGGGCCGCTACCAGCTGCTC
TCGGATGAGGACGAGTCTGACCACGGCAGCGACTTCGACGCGAACGCCGC
TGACGTGGACGCGGAGATGGTGGGCGAGGACGGCGAGGACCTCGTGGACT
ACGGCACGGGCGACTGGGTCGAGCACCTGGTGATGCAGGACAGGACGCAG
AAGATCACCAAGTCCGGTCAGATCATGTCGTACCGCACGCTCGTGACGGT
GGGCAACGCCAACGGCACGGGCGGCTTTGGCATGGGCAAGGGCGCGGAGC
CGCAGCAGTCGGTCGTCCGCGCGTTCCGCGACGCGCGGCGCTCGCTCATC
TACGTGGAGCGGTACAAGATGAGCGGCCTGCTCTACCCGCTGTACGGCGA
GCACAACAACCTCAAGGTGTACATCTACCCCACGCGGCCCGGCTCCGGCC
TGCGCGCCGGCGACATCATCGAGGGCATCCTCGAGGGCTTCGGCATCGCG
GACGCGACCGCCAAGGCGTACGGCAAGCGCCACCCGTACAGCGTCGTGCG
CGCGACTTTCAACGCTCTGCTGGGGCACGAGGGCCTGCACGACGTCGCCA
TGCGGCGCGGCGCGCGCATCCTCAGCGTCCACAAGACGCTGCTCGGGCGC
CACCACCGCGACGACCCGCGCTACTACTGAGCGCTGCTGCTCTCGCGCGC
GCTGCGCGCGAATGCGCCCCTTACACAAAGTGGGATTTCTACCAGGGCCT
GGGCTGGGACCCCCCCCCCCCCCTCCCC
back to top

protein sequence of jgi.p|Trimin1|14202

>Trimin1|14202|CE14201_83 ID=Trimin1|14202|CE14201_83|Name=jgi.p|Trimin1|14202|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=282bp
MGLALDPAAEARFAAWEARVRELGDDLAEPGLPDDLAEAWDVPPLAPPPP
NQVAKEQRRAAAAARAGRYQLLSDEDESDHGSDFDANAADVDAEMVGEDG
EDLVDYGTGDWVEHLVMQDRTQKITKSGQIMSYRTLVTVGNANGTGGFGM
GKGAEPQQSVVRAFRDARRSLIYVERYKMSGLLYPLYGEHNNLKVYIYPT
RPGSGLRAGDIIEGILEGFGIADATAKAYGKRHPYSVVRATFNALLGHEG
LHDVAMRRGARILSVHKTLLGRHHRDDPRYY*
back to top

mRNA from alignment at Contig_126:127551..131366-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13550 ID=mRNA_13550|Name=jgi.p|Trimin1|14202|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3816bp|location=Sequence derived from alignment at Contig_126:127551..131366- (Tribonema minus UTEX_B_3156 )
GCGGTCGACGCGCTCGCGGCGTCACCGCCGCCCGCTGCCGCCGACGGCAG
GCGCCCGCGGCCGCCGCGCGTGCCGACGCTCACCTACGATGACCTCTTTG
CGCACACGGCGCGCACGCCGGGGCACGTGCTGTCGCCGTACGACGCGGCG
CCGGCCCTGCGCGGCGGCGCGGGCATCGTCGAGGCGTTCGACCGTGTGGT
CGCGGGCGAGGCGTACGACCGCGTCGTCGCGGACATGGGGCTTGCGCTCG
ACCCCGCCGCGGAGGCGCGCTTCGCGGCGTGGGAGGCGCGCGTGCGCGAG
CTCGGCGACGACCTCGCGGAGCCCGGGCTGCCGGACGACCTCGCCGAGGC
GTGGGACGTGCCGCCGCTCGCGCCGCCGCCGCCCAACCAGGTGACGCTCC
CTGCTGTCCCTCTGTCTCTCACTCGCTCCCTCGCTCGCTCTGCCGAACCA
GGCGACTCCTCCCTGCCCCTATTGCCCTGCTGTCCCTCGCTCGTTTGCTC
TGCGTGGGTGTGCGTGTGGGCGTCCGCGGCTGAGTGGCATTGCACGCTGC
GCAGAGAGGCGGCTCTGGCGCTGGCGGCGATGCTGGCTCGTGCGCGCGGG
CTGCGGGATCTGCAACCGCTCGCGTGCGGACGCAGTGCTCATCGGCGTTG
CACGCTGCAGCTGCACTTCGGCGCCAGCGCGGCGCGCTGCGGCGCGTGGC
CGCGCCGCGCACAAGGAGCGCTGCTGCTCATGCACACAGCGCTCAGCGTG
CTGCGCTCAGCGGGAGGACCTAAGTCAGCGGCTGGTTAATTCGGTCTCGG
CGTCGCTGTCGCACAGAGGTGGCACAGTGCGTGCGCACCTCCATCGCCAC
GCAAATCACTGGAATCGAACGCTGCTGCTGCAGGGGCTGCGCGCCAAGGA
CGGCCTGCTCTCGCAACCTCAAGAGCCCGTCCTCACAGTAGGCACCCCAC
CCATTCCCAGGGACCATGGCGACAACGCCGCACGAAATGCCTCCGCCGCG
CCGCTGCCGCCGCGAGCGTGCGCCGACAGCACGCCCCTGATCCCCATTGC
TCAACTCCCTCTCGCCGCCGCCGCAGGTCGCCAAGGAGCAGCGCCGCGCC
GCCGCGGCCGCGCGCGCGGGCCGCTACCAGCTGCTCTCGGATGAGGACGA
GTCTGACCACGGCAGCGACTTCGACGCGAACGCCGCTGACGTGGACGCGG
AGATGGTGGGCGAGGACGGCGAGGACCTCGTGGACTACGGCACGGGCGAC
TGGGTCGAGCACCTGGTGATGCAGGACAGGACGCAGAAGGCACGTCACTG
CGCGCATATGTGTACATGAAGTTGAGGTTTCACGTTGGTCGTGCACGCTG
ATCCGGTCAGCGCGACGCGGGGCGGGACGCGGCAGGCACGTACGTCGTCA
CGTGTGCATGTGTGTGTCGCCGTCGGCGTTGGAGAGATATGTTACTTCAA
TGTTGAAGATTGTGATACTCTTACAGATTTGGTCTGTGTGGCACGGACAG
ATGCAGAAGACACGCCGTCACACTGTCACACATGCGAACGGGTCGGCGTT
CGCGTTACATAGCTCCTTATAACTCATCAGCGTATTATATCCTCTCATCA
AATCGGTCAGTGTGGTATAGGACAGCACGGGATGCAGAAGGCACCTTGCG
TCGCCTTGCCCGCGTGCGGGTCGTAGAGAGCTCTCATGGGTGCATTACTT
CAAGTTGAAGTACATCTCACCCATGGCGACGCACACTTGTGAATTTGTGA
GAGCTCTGCCGCTGCAGCGTCTGACGCGCAGGCGCACGCGTCGCGCGCTG
TCCAGCAAGCATCGCCAAGGAAATATAAGTAGTGGATATTACTGTTTACC
TCGTGGCCAATTGCCGCAGCAGCGGCGACCACGGTCATTGGTGGAAGGCT
CTGGCGGCTAACCACACCTTGTTACCTAGAGCTCTACGGCCTTTTGATTC
GTTTCCACAAGTTGTGTACCTCTTGAAGTATATCACTTCGCTCGGTTTTT
AGCTGAGCGCCCGCCCACCCTGCGGGGCATGGCGGCGCGCTCAAATTCAC
CCAGCAAGATTCGCGCCCTCACCGCAGTGGCCGCGGCTCCTCGCTATGCT
GCACCGGAGCGGCGTCAAAAGGGCGCCGCCGTTACCGGCCGCGGCACGAC
GGAGCTCGTACATACAGGCCCCCTTCATTCATTCACCACGTGAATTCATG
CACATGATTTTCAGAAGCGTGCACGACGCACCGGCCCTTTCGCGGGCACA
GTAGCGCAGCAACGCGACGCCGCCATGAAGCCTGCATTCGCCGCCCCTGT
CGCGCGTGAAAACCTCCGCAGTGCTTCTTAATGAATTGAATGCGCCACGG
CGTCGCGCACGCTCGCCGCGCTTTGCTTGTGCGATCATGACCACGCTCGC
TTCCCGCGAGCGCGAACGACTATACCTATACATACCCATAGACGCCGTGT
CGGTCGGTCCACAGTGCTTCACCGCTGCTGGCCCGCCAAGCATCAATGCC
ATGCACCCTCAAGGCAGTCCTGCAATCACTATTTTATCAACACATCCACC
TCTGAATCCACTCTTTCAAACAGCTATGCCGGTTCAGTGCCCCACGTGCG
CACACACGCTCACTCCCCTCCCCCCCCCCTCCCCGTTCCCCGGCCTTTGT
ATGCGGGCGCTCTTACCCCCCCCCCCCCCCCCAGATCACCAAGTCCGGTC
AGATCATGTCGTACCGCACGCTCGTGACGGTGGGCAACGCCAACGGCACG
GGCGGCTTTGGCATGGGCAAGGGCGCGGAGCCGCAGCAGTCGGTCGTCCG
CGCGTTCCGCGACGCGCGGCGCTCGCTCATCTACGTGGAGCGGTACAAGA
TGAGCGGCCTGCTCTACCCGCTGTACGGCGAGCACAACAACCTCAAGGTG
ACCTATGTTGAAGTAGTCCCACCTGATGGTTAAGTGGTTTACCACGTGAT
GGTGGTATCCCTAATGTTGAAGTAAACCTCGTGTACGTGGAGCGCTGCCA
GATGAGCGGCCTCCTGTACCCGCTGTACGGCGAGCACAACAACCTCAAAG
GTGAGCGATGTTGAAGTAGTCCCAGGCTGATGTTGAAGCCTGATGTTGCA
GTATCTGCACCTGAGCTAGCGAGGGCCGTGTAGTGCGCCTACGGTGCCTG
AGTCGCCCACACTTCTGCCCTTTATGCATTGCGAAATATCCCCCCCCCCC
CCCCCCCCTCTCCGGCGGCGACGCATCATGCAAGCCAGACGGACGTCTCC
AGCTCTGTTGTCTCTCTCCACACGTAAGTTGGCCGGCGTCACTCGCGCGA
CAGCTTGCTTTGCCACCGCTTCACGGCACCAAAGCACCTGAGTGCACGTT
CACGCAAAGCAGCAACTGCCAGATGCTATCGTCGCCGCCGCCGCCGCTGC
TGCGCCCAAACGGCACCGTCGCTCACACGCTCCCCCCCCCCCTCCCCCCC
GCAGGTGTACATCTACCCCACGCGGCCCGGCTCCGGCCTGCGCGCCGGCG
ACATCATCGAGGGCATCCTCGAGGGCTTCGGCATCGCGGACGCGACCGCC
AAGGCGTACGGCAAGCGCCACCCGTACAGCGTCGTGCGCGCGACTTTCAA
CGCTCTGCTGGGGCACGAGGGCCTGCACGACGTCGCCATGCGGCGCGGCG
CGCGCATCCTCAGCGTCCACAAGACGCTGCTCGGGCGCCACCACCGCGAC
GACCCGCGCTACTACTGAGCGCTGCTGCTCTCGCGCGCGCTGCGCGCGAA
TGCGCCCCTTACACAAAGTGGGATTTCTACCAGGGCCTGGGCTGGGACCC
CCCCCCCCCCCTCCCC
back to top

Coding sequence (CDS) from alignment at Contig_126:127551..131366-

>mRNA_13550 ID=mRNA_13550|Name=jgi.p|Trimin1|14202|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=846bp|location=Sequence derived from alignment at Contig_126:127551..131366- (Tribonema minus UTEX_B_3156 )
ATGGGGCTTGCGCTCGACCCCGCCGCGGAGGCGCGCTTCGCGGCGTGGGA
GGCGCGCGTGCGCGAGCTCGGCGACGACCTCGCGGAGCCCGGGCTGCCGG
ACGACCTCGCCGAGGCGTGGGACGTGCCGCCGCTCGCGCCGCCGCCGCCC
AACCAGGTCGCCAAGGAGCAGCGCCGCGCCGCCGCGGCCGCGCGCGCGGG
CCGCTACCAGCTGCTCTCGGATGAGGACGAGTCTGACCACGGCAGCGACT
TCGACGCGAACGCCGCTGACGTGGACGCGGAGATGGTGGGCGAGGACGGC
GAGGACCTCGTGGACTACGGCACGGGCGACTGGGTCGAGCACCTGGTGAT
GCAGGACAGGACGCAGAAGATCACCAAGTCCGGTCAGATCATGTCGTACC
GCACGCTCGTGACGGTGGGCAACGCCAACGGCACGGGCGGCTTTGGCATG
GGCAAGGGCGCGGAGCCGCAGCAGTCGGTCGTCCGCGCGTTCCGCGACGC
GCGGCGCTCGCTCATCTACGTGGAGCGGTACAAGATGAGCGGCCTGCTCT
ACCCGCTGTACGGCGAGCACAACAACCTCAAGGTGTACATCTACCCCACG
CGGCCCGGCTCCGGCCTGCGCGCCGGCGACATCATCGAGGGCATCCTCGA
GGGCTTCGGCATCGCGGACGCGACCGCCAAGGCGTACGGCAAGCGCCACC
CGTACAGCGTCGTGCGCGCGACTTTCAACGCTCTGCTGGGGCACGAGGGC
CTGCACGACGTCGCCATGCGGCGCGGCGCGCGCATCCTCAGCGTCCACAA
GACGCTGCTCGGGCGCCACCACCGCGACGACCCGCGCTACTACTGA
back to top