mRNA_13545 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|175515
Unique NamemRNA_13545
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|175515 vs. uniprot
Match: A0A836CME5_9STRA (Rhodanese domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CME5_9STRA)

HSP 1 Score: 274 bits (701), Expect = 1.640e-93
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 1 
Query:    1 MGLVQPQGFKDITVVQAVQWMEKPGHGFNYLDIRCEEEHETMVAPKSSINVPAFTPDGDFEDENVEWIPVPTFEADVEARFGKDAKLLIGCRAGNRSTLACKRLVAAGFENLWNVESSSYMRTRQMGDDF 390
            MGLVQPQGFKDITVVQAVQWMEKPGHGFNYLDIRCEEEHETMVAPKSSINVPAFTPDGDFEDENVEWIPVPTFEADVEARFGKDAKLLIGCRAGNRSTLACKRLVAAGFENLWNVESSSYMRTRQMGDDF
Sbjct:    1 MGLVQPQGFKDITVVQAVQWMEKPGHGFNYLDIRCEEEHETMVAPKSSINVPAFTPDGDFEDENVEWIPVPTFEADVEARFGKDAKLLIGCRAGNRSTLACKRLVAAGFENLWNVESSSYMRTRQMGDDF 130
[Close]
BLAST of jgi.p|Trimin1|175515 vs. uniprot
Match: A0A523DJD0_9BACT (Rhodanese-like domain-containing protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A523DJD0_9BACT)

HSP 1 Score: 63.5 bits (153), Expect = 4.480e-10
Identity = 40/107 (37.38%), Postives = 61/107 (57.01%), Query Frame = 1 
Query:   28 KDITVVQAVQWMEKPGHGFNYLDIRCEEEHETMVAPKSSINVPAFTPDGDFEDENVEWIPVPTFEADVEARFGKDAKLLIGCRAGNRSTLACKRLVAAGFENLWNVE 348
            KD+ V +A Q ++  G G+ Y+D+R   E+E    P+ + NVP    D     +  +  P P F A ++A +  DAKLLIGC+ G RS+ A + L AAG+ +  NV+
Sbjct:    4 KDVGVQEAHQ-LQTTG-GYTYVDVRSVPEYENGH-PEGAHNVPLLHRDS----QTGQMTPNPEFLAVMQANYASDAKLLIGCQVGGRSSRAVQMLTAAGYGSAMNVK 103
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BLAST of jgi.p|Trimin1|175515 vs. uniprot
Match: A0A835E254_9POAL (Rhodanese domain-containing protein n=2 Tax=Digitaria exilis TaxID=1010633 RepID=A0A835E254_9POAL)

HSP 1 Score: 63.2 bits (152), Expect = 5.370e-10
Identity = 41/107 (38.32%), Postives = 59/107 (55.14%), Query Frame = 1 
Query:   34 ITVVQAVQWMEKPGHGFNYLDIRCEEEHETMVAPKSSINVPA--FTPDGDFEDENVEWIPVPTFEADVEARFGKDAKLLIGCRAGNRSTLACKRLVAAGFENLWNVE 348
            + V  A + +   GH   YLD+R EEE       K S+NVP   FT  G   ++N+++I        V A F K   +++GC++G RS LAC  L+ AGFEN+ N+E
Sbjct:   29 VDVAAASELVRSGGH--RYLDVRTEEEFRNGHV-KDSLNVPYVFFTSQG--REKNLKFIK------QVAAHFDKQDSIVVGCKSGVRSELACSDLMTAGFENVKNME 124
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BLAST of jgi.p|Trimin1|175515 vs. uniprot
Match: A0A1B6PJS5_SORBI (Rhodanese domain-containing protein n=4 Tax=Sorghum bicolor TaxID=4558 RepID=A0A1B6PJS5_SORBI)

HSP 1 Score: 63.5 bits (153), Expect = 9.190e-10
Identity = 42/107 (39.25%), Postives = 58/107 (54.21%), Query Frame = 1 
Query:   34 ITVVQAVQWMEKPGHGFNYLDIRCEEEHETMVAPKSSINVPA--FTPDGDFEDENVEWIPVPTFEADVEARFGKDAKLLIGCRAGNRSTLACKRLVAAGFENLWNVE 348
            + V  A   +   GH   YLD+R EEE       + S+NVP   FT  G   ++N      P F A V A F K+  +++GC++G RS LAC  L+AAGF N+ N+E
Sbjct:   78 VGVAAASDLIRSGGH--RYLDVRTEEEFRNGHV-EDSLNVPYLFFTSQG--REKN------PRFVAQVAADFDKEDNIVVGCKSGVRSELACADLMAAGFRNVKNIE 173
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BLAST of jgi.p|Trimin1|175515 vs. uniprot
Match: K3ZXT6_SETIT (Rhodanese domain-containing protein n=3 Tax=Paniceae TaxID=147428 RepID=K3ZXT6_SETIT)

HSP 1 Score: 62.4 bits (150), Expect = 1.080e-9
Identity = 42/107 (39.25%), Postives = 57/107 (53.27%), Query Frame = 1 
Query:   34 ITVVQAVQWMEKPGHGFNYLDIRCEEEHETMVAPKSSINVPA--FTPDGDFEDENVEWIPVPTFEADVEARFGKDAKLLIGCRAGNRSTLACKRLVAAGFENLWNVE 348
            + V  A   +   GH   YLD+R EEE       + S+NVP   FT  G   ++N      P F   V A F K   +++GC++G RS LAC  L+AAGFEN+ N+E
Sbjct:   30 VDVAAAGDLVRSGGH--RYLDVRTEEEFRNGHV-EDSLNVPYLFFTSQG--REKN------PKFIEQVAAHFDKQDSIVVGCKSGVRSELACFDLMAAGFENVKNIE 125
[Close]
BLAST of jgi.p|Trimin1|175515 vs. uniprot
Match: A0A1M3MV81_9DELT (Rhodanese domain-containing protein n=1 Tax=Myxococcales bacterium 68-20 TaxID=1895795 RepID=A0A1M3MV81_9DELT)

HSP 1 Score: 59.7 bits (143), Expect = 6.650e-9
Identity = 36/86 (41.86%), Postives = 48/86 (55.81%), Query Frame = 1 
Query:   79 GFNYLDIRCEEEHETMVAPKSSINVPAFTPDGDFEDENVEWIPVPTFEADVEARFGKDAKLLIGCRAGNRSTLACKRLVAAGFENL 336
            GF Y+D+R  EE      P  SINVP     GD      +++P       +EA+F KDA +L+GC+AG RS  A   L+AAGF N+
Sbjct:   20 GFTYVDVRTPEEF-AEGRPAGSINVPL----GD------DFVPA------MEAKFAKDAPILVGCKAGGRSLRAANALIAAGFTNV 88
[Close]
BLAST of jgi.p|Trimin1|175515 vs. uniprot
Match: A0A2T7ES26_9POAL (Rhodanese domain-containing protein n=4 Tax=Panicum TaxID=4539 RepID=A0A2T7ES26_9POAL)

HSP 1 Score: 60.1 bits (144), Expect = 8.780e-9
Identity = 42/107 (39.25%), Postives = 56/107 (52.34%), Query Frame = 1 
Query:   34 ITVVQAVQWMEKPGHGFNYLDIRCEEEHETMVAPKSSINVPA--FTPDGDFEDENVEWIPVPTFEADVEARFGKDAKLLIGCRAGNRSTLACKRLVAAGFENLWNVE 348
            + V  A   +   GH   YLD+R  EE       K S+NVP   FT  G   ++N      P F   V A F K   +++GC++G RS LAC  L+AAGFEN+ N+E
Sbjct:   33 VGVAAAGDLLRSGGH--RYLDVRTAEEFRNGHV-KDSLNVPYVFFTSQG--REKN------PQFIEQVVAHFDKQDNIVVGCKSGVRSELACFDLMAAGFENVNNME 128
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BLAST of jgi.p|Trimin1|175515 vs. uniprot
Match: UPI0019D6A077 (thiosulfate sulfurtransferase 16, chloroplastic-like n=1 Tax=Panicum virgatum TaxID=38727 RepID=UPI0019D6A077)

HSP 1 Score: 60.8 bits (146), Expect = 8.970e-9
Identity = 42/107 (39.25%), Postives = 57/107 (53.27%), Query Frame = 1 
Query:   34 ITVVQAVQWMEKPGHGFNYLDIRCEEEHETMVAPKSSINVPA--FTPDGDFEDENVEWIPVPTFEADVEARFGKDAKLLIGCRAGNRSTLACKRLVAAGFENLWNVE 348
            + V  A   +   GH   YLD+R EEE   +   K S+NVP   FT  G   ++N      P F   V A F K   +++GC++G RS LAC  L+AAGF N+ N+E
Sbjct:   74 VDVAAAGDLLRSGGH--RYLDVRTEEEFR-IGHVKDSLNVPYVFFTSQG--REKN------PQFIEQVAAHFDKQDNIVVGCKSGVRSELACFDLMAAGFGNVKNME 169
[Close]
BLAST of jgi.p|Trimin1|175515 vs. uniprot
Match: A0A2E0TIV0_9DELT (Rhodanese n=1 Tax=Sandaracinus sp. TaxID=2024858 RepID=A0A2E0TIV0_9DELT)

HSP 1 Score: 58.5 bits (140), Expect = 3.270e-8
Identity = 42/122 (34.43%), Postives = 65/122 (53.28%), Query Frame = 1 
Query:   34 ITVVQAVQWMEKPGHGFNYLDIRCEEEHETMVAPKSSINVPAFTPDGDFEDENVEWIPVPTFEADVEARFGKDAKLLIGCRAGNRSTLACKRLVAAGFENL------WNVESSSYMRTRQMG 381
            IT  +A++ ME    G+ Y+D+R   E E    P+ + NVP          +N +++ V      +EA FGKDAKL++GC+AG RS  A + L+AAGF ++      W     S+ +T + G
Sbjct:    6 ITPEEALERMED--EGWVYVDVRSIPEFEGGH-PEGAYNVPWKHRGAAGMSDNPDFLKV------MEAAFGKDAKLILGCQAGGRSRSAAEALLAAGFSSVVDQLAGWGGAKDSFGQTVEPG 118
[Close]
BLAST of jgi.p|Trimin1|175515 vs. uniprot
Match: A0A2E7BNM1_9BACT (Rhodanese n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2E7BNM1_9BACT)

HSP 1 Score: 58.2 bits (139), Expect = 4.940e-8
Identity = 32/90 (35.56%), Postives = 49/90 (54.44%), Query Frame = 1 
Query:   79 GFNYLDIRCEEEHETMVAPKSSINVPAFTPDGDFEDENVEWIPVPTFEADVEARFGKDAKLLIGCRAGNRSTLACKRLVAAGFENLWNVE 348
            G+ Y+D+R   E++    PK + NVP          E  +  P P F   ++A +  DAKLL+GC+ G RS+ A + L  AG+E + NV+
Sbjct:   20 GYTYVDVRSVPEYQNGH-PKGAQNVPLLL----LNSETKQMQPNPEFLVVMQANYPTDAKLLVGCQVGGRSSRAAQVLAEAGYETVVNVK 104
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|175515 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CME5_9STRA1.640e-93100.00Rhodanese domain-containing protein n=1 Tax=Tribon... [more]
A0A523DJD0_9BACT4.480e-1037.38Rhodanese-like domain-containing protein n=1 Tax=A... [more]
A0A835E254_9POAL5.370e-1038.32Rhodanese domain-containing protein n=2 Tax=Digita... [more]
A0A1B6PJS5_SORBI9.190e-1039.25Rhodanese domain-containing protein n=4 Tax=Sorghu... [more]
K3ZXT6_SETIT1.080e-939.25Rhodanese domain-containing protein n=3 Tax=Panice... [more]
A0A1M3MV81_9DELT6.650e-941.86Rhodanese domain-containing protein n=1 Tax=Myxoco... [more]
A0A2T7ES26_9POAL8.780e-939.25Rhodanese domain-containing protein n=4 Tax=Panicu... [more]
UPI0019D6A0778.970e-939.25thiosulfate sulfurtransferase 16, chloroplastic-li... [more]
A0A2E0TIV0_9DELT3.270e-834.43Rhodanese n=1 Tax=Sandaracinus sp. TaxID=2024858 R... [more]
A0A2E7BNM1_9BACT4.940e-835.56Rhodanese n=1 Tax=Acidobacteria bacterium TaxID=19... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_126contigContig_126:79511..80118 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|175515|e_gw1.126.10.1
GOsGO:0001101,GO:0003674,GO:0003824,GO:0004792,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006950,GO:0006979,GO:0007568,GO:0008150,GO:0009507,GO:0009536,GO:0009611,GO:0009719,GO:0009725,GO:0009753,GO:0010033,GO:0016740,GO:0016782,GO:0016783,GO:0032502,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:1901700
Descriptionthiosulfate sulfurtransferase activity
COG categoryP
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0607@1|root,KOG1530@2759|Eukaryota
Evalue7.1e-12
Seed ortholog55529.EKX51964
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRhodanese-like domain
Ec32 orthologEc-22_003290.1
TranscriptId175837
TrackFilteredModels1
ProteinId175515
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|175515gene_13545Tribonema minus UTEX_B_3156 geneContig_126 79511..80118 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|175515Trimin1|175515|e_gw1.126.10.1Tribonema minus UTEX_B_3156 polypeptideContig_126 79511..80118 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13545_2exon_13545_2Tribonema minus UTEX_B_3156 exonContig_126 79511..79720 -
exon_13545_1exon_13545_1Tribonema minus UTEX_B_3156 exonContig_126 79936..80118 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13545CDS_13545Tribonema minus UTEX_B_3156 CDSContig_126 79936..80118 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13545 ID=mRNA_13545|Name=jgi.p|Trimin1|175515|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=393bp|location=Sequence derived from alignment at Contig_126:79511..80118- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTCTAGTACAACCGCAGGGGTTCAAGGACATAACTGTGGTGCAGGC
GGTGCAGTGGATGGAGAAGCCAGGGCATGGGTTCAACTACTTGGACATAA
GATGCGAGGAGGAGCACGAGACAATGGTAGCGCCAAAATCGAGCATCAAT
GTCCCCGCGTTCACCCCGGATGGGGACTTTGAGGACGAGAACGTCGAATG
GATCCCGGTTCCCACTTTTGAGGCAGATGTGGAGGCCCGTTTTGGCAAAG
ACGCCAAGCTTCTGATTGGATGTAGAGCGGGCAACAGGTCCACCTTGGCG
TGCAAGCGGCTGGTGGCTGCGGGGTTCGAGAACCTCTGGAACGTCGAGAG
CAGTTCGTACATGCGCACGCGGCAAATGGGGGACGACTTCTGA
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protein sequence of jgi.p|Trimin1|175515

>Trimin1|175515|e_gw1.126.10.1 ID=Trimin1|175515|e_gw1.126.10.1|Name=jgi.p|Trimin1|175515|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=131bp
MGLVQPQGFKDITVVQAVQWMEKPGHGFNYLDIRCEEEHETMVAPKSSIN
VPAFTPDGDFEDENVEWIPVPTFEADVEARFGKDAKLLIGCRAGNRSTLA
CKRLVAAGFENLWNVESSSYMRTRQMGDDF*
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mRNA from alignment at Contig_126:79511..80118-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13545 ID=mRNA_13545|Name=jgi.p|Trimin1|175515|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=608bp|location=Sequence derived from alignment at Contig_126:79511..80118- (Tribonema minus UTEX_B_3156 )
ATGGGTCTAGTACAACCGCAGGGGTTCAAGGACATAACTGTGGTGCAGGC
GGTGCAGTGGATGGAGAAGCCAGGGCATGGGTTCAACTACTTGGACATAA
GATGCGAGGAGGAGCACGAGACAATGGTAGCGCCAAAATCGAGCATCAAT
GTCCCCGCGTTCACCCCGGATGGGGACTTTGAGGTAAGCAGCACAACGCT
TGTCAACTGCAGTTGCAGGCTCCTCCAGTGACATGTCGATCTCAACTTCA
GAATTACATGTCATGTTTGCACGCATGCAGCAGCAGTGGACTTGCTTCAA
CTCCTTTCCCCAGTGCACACGAGAAATTGAAGCGGATTGCTCTGCACATC
AAACCACTTTCAATAGTGACTTAGCACGTGAGCTTTGCTCCGTCGCAGGA
CGAGAACGTCGAATGGATCCCGGTTCCCACTTTTGAGGCAGATGTGGAGG
CCCGTTTTGGCAAAGACGCCAAGCTTCTGATTGGATGTAGAGCGGGCAAC
AGGTCCACCTTGGCGTGCAAGCGGCTGGTGGCTGCGGGGTTCGAGAACCT
CTGGAACGTCGAGAGCAGTTCGTACATGCGCACGCGGCAAATGGGGGACG
ACTTCTGA
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Coding sequence (CDS) from alignment at Contig_126:79511..80118-

>mRNA_13545 ID=mRNA_13545|Name=jgi.p|Trimin1|175515|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=393bp|location=Sequence derived from alignment at Contig_126:79511..80118- (Tribonema minus UTEX_B_3156 )
ATGGGTCTAGTACAACCGCAGGGGTTCAAGGACATAACTGTGGTGCAGGC
GGTGCAGTGGATGGAGAAGCCAGGGCATGGGTTCAACTACTTGGACATAA
GATGCGAGGAGGAGCACGAGACAATGGTAGCGCCAAAATCGAGCATCAAT
GTCCCCGCGTTCACCCCGGATGGGGACTTTGAGGACGAGAACGTCGAATG
GATCCCGGTTCCCACTTTTGAGGCAGATGTGGAGGCCCGTTTTGGCAAAG
ACGCCAAGCTTCTGATTGGATGTAGAGCGGGCAACAGGTCCACCTTGGCG
TGCAAGCGGCTGGTGGCTGCGGGGTTCGAGAACCTCTGGAACGTCGAGAG
CAGTTCGTACATGCGCACGCGGCAAATGGGGGACGACTTCTGA
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